Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

M

K

F

K

K

C

L

L

P

V

A

M

L

A

S

F

T

L

A

G

C

Q

S

N

A

D

D

H

A

A

D

V

Y

Q

T

D

Q

L

N

T

K

Q

E

T

K

T

V

N

I

I

S

I

L

P

A

K

V

A

V

Secondary structure

SS confidence

Disorder

?

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?

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?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

D

N

S

Q

N

K

R

N

A

Q

A

F

G

A

L

I

G

A

V

A

G

G

V

I

G

H

N

V

G

S

G

S

N

S

G

T

T

A

G

A

V

G

G

G

A

V

G

A

A

A

G

S

M

V

N

D

K

T

L

V

Secondary structure

SS confidence

Disorder

?

?

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?

?

?

?

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?

?

?

?

?

?

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?

?

Disorder confidence

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130

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140

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150

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160

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.

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.

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.

.

170

.

.

Sequence

E

G

V

S

L

T

Y

K

E

G

T

K

V

Y

T

S

T

Q

V

G

K

E

C

Q

F

T

T

G

L

A

V

V

I

T

T

T

Y

N

E

T

R

I

Q

P

N

T

K

C

P

E

K

S

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3cp0 chain A Region: 126 - 166 Aligned: 41 Modelled: 41 Confidence: 72.4% Identity: 7% PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum Phyre2 PDB 2kvq chain G Region: 141 - 156 Aligned: 16 Modelled: 16 Confidence: 57.1% Identity: 19% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 2jvv chain A Region: 141 - 156 Aligned: 16 Modelled: 16 Confidence: 57.1% Identity: 19% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 2lll chain A Region: 121 - 172 Aligned: 52 Modelled: 52 Confidence: 54.1% Identity: 8% PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a Phyre2 PDB 1nz9 chain A Region: 141 - 156 Aligned: 16 Modelled: 16 Confidence: 48.3% Identity: 19% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2gnr chain A domain 1 Region: 126 - 153 Aligned: 28 Modelled: 27 Confidence: 47.6% Identity: 11% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: SSO2064-like Phyre2 PDB 2e6z chain A Region: 140 - 157 Aligned: 18 Modelled: 18 Confidence: 46.6% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 1npp chain A domain 2 Region: 141 - 156 Aligned: 16 Modelled: 16 Confidence: 45.5% Identity: 19% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 1h9m chain A domain 1 Region: 123 - 166 Aligned: 44 Modelled: 44 Confidence: 43.8% Identity: 14% Fold: OB-fold Superfamily: MOP-like Family: BiMOP, duplicated molybdate-binding domain Phyre2 PDB 1fdr chain A domain 1 Region: 126 - 171 Aligned: 46 Modelled: 46 Confidence: 38.9% Identity: 13% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1k25 chain A domain 1 Region: 119 - 157 Aligned: 39 Modelled: 39 Confidence: 37.8% Identity: 10% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 1q1c chain A domain 1 Region: 121 - 155 Aligned: 35 Modelled: 35 Confidence: 36.9% Identity: 20% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2dxc chain G Region: 140 - 153 Aligned: 14 Modelled: 14 Confidence: 36.7% Identity: 29% PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form Phyre2 PDB 2do3 chain A domain 1 Region: 145 - 156 Aligned: 12 Modelled: 12 Confidence: 35.7% Identity: 25% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: SPT5 KOW domain-like Phyre2 PDB 1oxx chain K domain 1 Region: 123 - 162 Aligned: 39 Modelled: 40 Confidence: 35.4% Identity: 8% Fold: OB-fold Superfamily: MOP-like Family: ABC-transporter additional domain Phyre2 PDB 1pyy chain A domain 1 Region: 119 - 157 Aligned: 39 Modelled: 39 Confidence: 35.3% Identity: 8% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 3qz9 chain D Region: 140 - 153 Aligned: 14 Modelled: 14 Confidence: 34.0% Identity: 29% PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. Phyre2 PDB 1h9m chain B Region: 121 - 164 Aligned: 44 Modelled: 44 Confidence: 33.8% Identity: 11% PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound Phyre2 PDB 1ugp chain B Region: 140 - 153 Aligned: 14 Modelled: 14 Confidence: 33.2% Identity: 21% Fold: SH3-like barrel Superfamily: Electron transport accessory proteins Family: Nitrile hydratase beta chain Phyre2 PDB 1ifr chain A Region: 121 - 172 Aligned: 52 Modelled: 52 Confidence: 33.2% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: Lamin A/C globular tail domain Family: Lamin A/C globular tail domain Phyre2 1 c3cp0A_ 2 c2kvqG_ 3 c2jvvA_ 4 c2lllA_ 5 d1nz9a_ 6 d2gnra1 7 c2e6zA_ 8 d1nppa2 9 d1h9ma1 10 d1fdra1 11 d1k25a1 12 d1q1ca1 13 c2dxcG_ 14 d2do3a1 15 d1oxxk1 16 d1pyya1 17 c3qz9D_ 18 c1h9mB_ 19 d1ugpb_ 20 d1ifra_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3cp0A_ 72.4 7 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 2 c2kvqG_ 57.1 19 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 3 c2jvvA_ 57.1 19 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 4 c2lllA_ 54.1 8 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 5 d1nz9a_ 48.3 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 6 d2gnra1 47.6 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 7 c2e6zA_ 46.6 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 8 d1nppa2 45.5 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 9 d1h9ma1 43.8 14 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 10 d1fdra1 38.9 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 11 d1k25a1 37.8 10 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 12 d1q1ca1 36.9 20 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 13 c2dxcG_ 36.7 29 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 14 d2do3a1 35.7 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 15 d1oxxk1 35.4 8 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 16 d1pyya1 35.3 8 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 17 c3qz9D_ 34.0 29 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 18 c1h9mB_ 33.8 11 PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound 19 d1ugpb_ 33.2 21 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 20 d1ifra_ 33.2 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 21 d1h9ra1 not modelled 33.0 14 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 22 d1v29b_ not modelled 31.6 14 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 23 c3e0eA_ not modelled 31.3 19 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 24 d1ivta_ not modelled 30.7 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 25 c3jt0B_ not modelled 28.1 15 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 26 d2zjrm1 not modelled 27.7 36 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 27 d2asba1 not modelled 27.2 6 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 28 d1pkla3 not modelled 27.1 37 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 29 c2fhdA_ not modelled 22.4 9 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 30 d2qdyb1 not modelled 21.8 23 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 31 d1fr3a_ not modelled 21.4 8 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 32 c2kppA_ not modelled 20.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0431 protein; PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112 33 d1h9ra2 not modelled 20.4 9 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 34 d1v43a2 not modelled 19.5 9 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 35 c1m1gB_ not modelled 18.9 19 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 36 d1yloa1 not modelled 18.5 16 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 37 d1vhea1 not modelled 18.2 23 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 38 d1kyaa2 not modelled 17.9 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 39 c2k5hA_ not modelled 16.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 40 c1h9sA_ not modelled 16.2 14 PDB header:transcription regulator Chain: A: PDB Molecule:molybdenum transport protein mode; PDBTitle: molybdate bound complex of dimop domain of mode from e.coli 41 d2ccwa1 not modelled 15.8 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 42 d1g2914 not modelled 15.5 15 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 43 d1te7a_ not modelled 15.3 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 44 d1ah9a_ not modelled 15.2 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 45 d1qfja1 not modelled 15.0 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 46 d1h9ma2 not modelled 14.9 10 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 47 d2j01t1 not modelled 14.6 36 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 48 c1rouA_ not modelled 14.6 19 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 49 c3p8bB_ not modelled 14.1 12 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 50 d1y0ya1 not modelled 13.8 10 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 51 d2cowa1 not modelled 13.6 13 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 52 c3zv0D_ not modelled 13.1 23 PDB header:cell cycle Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1p-cbf5p complex 53 c2lbgA_ not modelled 12.9 18 PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles 54 d1hh2p1 not modelled 12.8 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 55 c3gwqB_ not modelled 12.7 7 PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution 56 d1guta_ not modelled 12.7 7 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 57 d3d31a1 not modelled 12.3 5 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 58 c2egcA_ not modelled 12.3 11 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the fifth sh3 domain from human2 kiaa0418 protein 59 c2k14A_ not modelled 12.2 12 PDB header:unknown function Chain: A: PDB Molecule:yuaf protein; PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis 60 c2xhcA_ not modelled 11.9 29 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 61 d1v10a2 not modelled 11.0 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 62 d2hqha1 not modelled 10.8 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 63 d2cp5a1 not modelled 10.5 13 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 64 d2awna1 not modelled 10.5 4 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 65 d2grea1 not modelled 10.4 13 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 66 c3dm3A_ not modelled 9.8 16 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 67 c1piwA_ not modelled 9.7 9 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical zinc-type alcohol dehydrogenase- PDBTitle: apo and holo structures of an nadp(h)-dependent cinnamyl2 alcohol dehydrogenase from saccharomyces cerevisiae 68 d2q07a1 not modelled 9.6 10 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 69 c2d6fA_ not modelled 9.4 14 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 70 d2e3ia1 not modelled 9.3 18 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 71 d2gycn1 not modelled 9.3 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 72 c1nwxN_ not modelled 9.1 36 PDB header:ribosome Chain: N: PDB Molecule:ribosomal protein l19; PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773 73 d2vv5a1 not modelled 9.1 15 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 74 d2zjrr1 not modelled 8.8 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 75 c3m9qA_ not modelled 8.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:protein male-specific lethal-3; PDBTitle: drosophila msl3 chromodomain 76 d1q7ha1 not modelled 8.7 9 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 77 d1whma_ not modelled 8.7 5 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 78 c3fp9E_ not modelled 8.6 8 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 79 d1k3ra1 not modelled 8.6 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 80 c2piaA_ not modelled 8.2 11 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 81 c1krhA_ not modelled 8.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 82 c3es4B_ not modelled 8.0 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 83 d1piwa1 not modelled 7.8 9 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 84 d2cp2a1 not modelled 7.8 13 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 85 d2cp0a1 not modelled 7.6 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 86 d2jnaa1 not modelled 7.6 20 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 87 d1tova_ not modelled 7.6 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 88 c3i4oA_ not modelled 7.5 6 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 89 c3jxoB_ not modelled 7.4 10 PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 90 d1iq8a3 not modelled 7.4 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 91 d1hfua2 not modelled 7.4 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 92 d1uufa1 not modelled 7.3 10 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 93 d1m1ha1 not modelled 7.1 15 Fold:N-utilization substance G protein NusG, insert domain Superfamily:N-utilization substance G protein NusG, insert domain Family:N-utilization substance G protein NusG, insert domain 94 c2asbA_ not modelled 7.0 6 PDB header:transcription/rna Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex 95 c3zvkG_ not modelled 7.0 18 PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter 96 c1yqxB_ not modelled 6.9 26 PDB header:oxidoreductase Chain: B: PDB Molecule:sinapyl alcohol dehydrogenase; PDBTitle: sinapyl alcohol dehydrogenase at 2.5 angstrom resolution 97 c2e4hA_ not modelled 6.8 22 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 98 c2yyzA_ not modelled 6.7 6 PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein 99 d2apoa1 not modelled 6.7 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0