Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	V	P	E	E	T	E	K	K	A	R	D	V	N	E	K	T	A	L	L	K	K	K	S	A	T	E	L	G	E	L	A	T	S	I	N	T	I	A	R	D	A	H	M	E	A	N	L	E	M	E	I	V	P	Q	G	L	R	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																										?	?	?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	I	K	D	D	Q	N	R	N	M	F	E	R	G	S	A	K	I	M	P	F	F	K	T	L	L	V	E	L	A	P	V	F	D	S	L	D	N	K	I	I	I	T	G	H	T	D	A	M	A	Y	K	N	N	I	Y	N	N	W	N
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?		?	?		?		?	?	?																																		?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	S	G	D	R	A	L	S	A	R	R	V	L	E	E	A	G	M	P	E	D	K	V	M	Q	V	S	A	M	A	D	Q	M	L	L	D	S	K	N	P	Q	S	A	G	N	R	R	I	E	I	M	V	L	T	K	S	A	S	D	T
Secondary structure
SS confidence
Disorder																											?	?	?	?	?													?													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Sequence		L	Y	Q	Y	F	G	Q	H	G	D	K	V	V	Q	P	L	V	Q	K	L	D	K	Q	Q	V	L	S	Q	R	T	R
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2zvy chain B Region: 15 - 188 Aligned: 174 Modelled: 174 Confidence: 100.0% Identity: 35% PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) Phyre2 PDB 3khn chain B Region: 21 - 175 Aligned: 151 Modelled: 155 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. Phyre2 PDB 2l26 chain A Region: 66 - 172 Aligned: 103 Modelled: 107 Confidence: 100.0% Identity: 23% PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains Phyre2 PDB 2k1s chain A Region: 35 - 175 Aligned: 134 Modelled: 141 Confidence: 100.0% Identity: 21% PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. Phyre2 PDB 3cyq chain M Region: 67 - 177 Aligned: 110 Modelled: 111 Confidence: 100.0% Identity: 20% PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid Phyre2 PDB 2zov chain A Region: 19 - 183 Aligned: 153 Modelled: 162 Confidence: 99.9% Identity: 34% PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i) Phyre2 PDB 2kgw chain A Region: 68 - 172 Aligned: 101 Modelled: 105 Confidence: 99.9% Identity: 24% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis Phyre2 PDB 2aiz chain P domain 1 Region: 69 - 171 Aligned: 99 Modelled: 103 Confidence: 99.9% Identity: 19% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 3td4 chain D Region: 59 - 175 Aligned: 111 Modelled: 117 Confidence: 99.9% Identity: 21% PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate Phyre2 PDB 2hqs chain C domain 1 Region: 67 - 171 Aligned: 101 Modelled: 105 Confidence: 99.9% Identity: 22% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 1r1m chain A Region: 59 - 172 Aligned: 107 Modelled: 114 Confidence: 99.9% Identity: 20% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 1r1m chain A Region: 59 - 172 Aligned: 107 Modelled: 114 Confidence: 99.9% Identity: 20% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis Phyre2 PDB 3ldt chain A Region: 36 - 177 Aligned: 132 Modelled: 142 Confidence: 99.9% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila Phyre2 PDB 3oon chain A Region: 48 - 174 Aligned: 112 Modelled: 127 Confidence: 99.9% Identity: 23% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 Phyre2 PDB 2zf8 chain A Region: 69 - 150 Aligned: 71 Modelled: 82 Confidence: 99.6% Identity: 27% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 2cz4 chain A domain 1 Region: 125 - 185 Aligned: 59 Modelled: 61 Confidence: 39.0% Identity: 12% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 2axl chain A domain 1 Region: 71 - 163 Aligned: 85 Modelled: 89 Confidence: 31.5% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: RecQ helicase DNA-binding domain-like Phyre2 PDB 3l7p chain A Region: 125 - 154 Aligned: 30 Modelled: 30 Confidence: 30.8% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans Phyre2 PDB 3lat chain B Region: 69 - 141 Aligned: 73 Modelled: 73 Confidence: 29.9% Identity: 11% PDB header:hydrolase Chain: B: PDB Molecule:bifunctional autolysin; PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie Phyre2 PDB 3o8w chain A Region: 125 - 184 Aligned: 58 Modelled: 60 Confidence: 29.0% Identity: 16% PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 Phyre2 1 c2zvyB_ 2 c3khnB_ 3 c2l26A_ 4 c2k1sA_ 5 c3cyqM_ 6 c2zovA_ 7 c2kgwA_ 8 d2aizp1 9 c3td4D_ 10 d2hqsc1 11 d1r1ma_ 12 c1r1mA_ 13 c3ldtA_ 14 c3oonA_ 15 c2zf8A_ 16 d2cz4a1 17 d2axla1 18 c3l7pA_ 19 c3latB_ 20 c3o8wA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2zvyB_ 100.0 35 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 2 c3khnB_ 100.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 3 c2l26A_ 100.0 23 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 4 c2k1sA_ 100.0 21 PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. 5 c3cyqM_ 100.0 20 PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid 6 c2zovA_ 99.9 34 PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i) 7 c2kgwA_ 99.9 24 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 8 d2aizp1 99.9 19 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 9 c3td4D_ 99.9 21 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 10 d2hqsc1 99.9 22 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 11 d1r1ma_ 99.9 20 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 12 c1r1mA_ 99.9 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis 13 c3ldtA_ 99.9 16 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila 14 c3oonA_ 99.9 23 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 15 c2zf8A_ 99.6 27 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 16 d2cz4a1 39.0 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 17 d2axla1 31.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 18 c3l7pA_ 30.8 13 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 19 c3latB_ 29.9 11 PDB header:hydrolase Chain: B: PDB Molecule:bifunctional autolysin; PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie 20 c3o8wA_ 29.0 16 PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 21 d1qy7a_ not modelled 28.7 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 22 c2rd5D_ not modelled 27.9 16 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 23 c3mhyC_ not modelled 26.5 11 PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure 24 c3bzqA_ not modelled 23.5 19 PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis 25 d2piia_ not modelled 21.7 18 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 26 c2j9dG_ not modelled 21.5 17 PDB header:membrane transport Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake 27 d1hwua_ not modelled 21.5 21 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 28 d1ul3a_ not modelled 20.7 19 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 29 c3ncpD_ not modelled 20.4 21 PDB header:signaling protein Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2); PDBTitle: glnk2 from archaeoglobus fulgidus 30 d2ns1b1 not modelled 20.0 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 31 d1z2la1 not modelled 18.7 19 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 32 d1e32a3 not modelled 18.2 16 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 33 d1rbli_ not modelled 16.4 16 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 34 d1h4pa_ not modelled 16.1 9 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 35 d1svdm1 not modelled 14.9 8 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 36 d1uzhc1 not modelled 14.8 8 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 37 d1e5ma2 not modelled 13.8 9 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 38 d1ir1s_ not modelled 13.4 28 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 39 d1xhja_ not modelled 13.2 8 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 40 c2oghA_ not modelled 13.2 4 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1; PDBTitle: solution structure of yeast eif1 41 d1vfja_ not modelled 13.1 5 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 42 d1jx4a1 not modelled 13.0 16 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 43 d1k1sa1 not modelled 13.0 16 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 44 d1bxni_ not modelled 12.3 20 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 45 d2if1a_ not modelled 12.0 22 Fold:eIF1-like Superfamily:eIF1-like Family:eIF1-like 46 c2qw5B_ not modelled 11.7 8 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 47 c3icgD_ not modelled 11.5 12 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 48 d2gfva2 not modelled 11.4 17 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 49 d1bwvs_ not modelled 11.4 20 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 50 c3o0dF_ not modelled 11.3 25 PDB header:hydrolase Chain: F: PDB Molecule:triacylglycerol lipase; PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution 51 d1u5ta2 not modelled 11.3 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 52 c3r8kB_ not modelled 10.7 22 PDB header:apoptosis Chain: B: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul protein (hexagonal form) 53 d2gova1 not modelled 10.2 21 Fold:Probable bacterial effector-binding domain Superfamily:Probable bacterial effector-binding domain Family:SOUL heme-binding protein 54 d1tqya2 not modelled 10.1 12 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 55 c2q3vB_ not modelled 9.9 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein at2g34160; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g34160 56 d1d4oa_ not modelled 9.8 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 57 d1qnaa1 not modelled 9.8 14 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 58 d1saza1 not modelled 9.8 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 59 c1ir6A_ not modelled 9.8 15 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese 60 d1ir6a_ not modelled 9.8 15 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ 61 c2cfuA_ not modelled 9.7 10 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 62 d2ix4a2 not modelled 9.5 18 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 63 c1pt9B_ not modelled 9.4 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 64 c3g7nA_ not modelled 9.1 17 PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of a triacylglycerol lipase from2 penicillium expansum at 1.3 65 d1jqna_ not modelled 9.0 15 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 66 d1xdpa4 not modelled 8.5 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 67 c3ds8A_ not modelled 8.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 68 c1amuB_ not modelled 7.8 18 PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine 69 c1nauA_ not modelled 7.6 18 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon; PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles 70 c1jqoA_ not modelled 7.4 13 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 71 d1jqoa_ not modelled 7.4 13 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 72 d2o8ra4 not modelled 7.4 27 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 73 c2rodB_ not modelled 7.2 22 PDB header:apoptosis Chain: B: PDB Molecule:noxa; PDBTitle: solution structure of mcl-1 complexed with noxaa 74 c3hluA_ not modelled 7.2 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 75 d3tgla_ not modelled 7.2 26 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 76 d2j5pa1 not modelled 7.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 77 d1ox0a2 not modelled 7.0 20 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 78 c3mmpC_ not modelled 7.0 21 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 79 d1r3na1 not modelled 7.0 11 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 80 d1tkja1 not modelled 6.9 18 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 81 c1ydoC_ not modelled 6.8 8 PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. 82 d2v7fa1 not modelled 6.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rps19E-like 83 c3aysA_ not modelled 6.5 10 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose 84 d1ybha1 not modelled 6.4 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 85 c2cw6B_ not modelled 6.1 17 PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria 86 d2ve8a1 not modelled 6.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 87 c4a1dH_ not modelled 6.0 22 PDB header:ribosome Chain: H: PDB Molecule:rpl35a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 88 d1j3na2 not modelled 5.8 22 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 89 d1e5da2 not modelled 5.8 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 90 d1nh2a1 not modelled 5.8 12 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 91 d1amua_ not modelled 5.8 18 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 92 d1uc8a1 not modelled 5.7 42 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 93 c3lubE_ not modelled 5.6 13 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 94 d1fyba1 not modelled 5.5 18 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 95 c3bzjA_ not modelled 5.3 11 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 96 d1nh2a2 not modelled 5.2 15 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 97 c3eyiB_ not modelled 5.2 29 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 98 d1v8da_ not modelled 5.1 12 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Hypothetical protein TT1679

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0