Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	R	N	T	E	A	T	D	D	V	K	T	W	T	G	G	P	L	N	Y	K	E	G	F	F	T	Q	L	A	T	D	E	L	A	K	G	I	N	E	E	V	V	R	A	I	S	A	K	R	N	E	P	E	W	M	L	E	F	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?							?																			?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	N	A	Y	R	A	W	L	E	M	E	E	P	H	W	L	K	A	H	Y	D	K	L	N	Y	Q	D	Y	S	Y	Y	S	A	P	S	C	G	N	C	D	D	T	C	A	S	E	P	G	A	V	Q	Q	T	G	A	N	A	F	L	S
Secondary structure
SS confidence
Disorder															?																?		?		?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	E	V	E	A	A	F	E	Q	L	G	V	P	V	R	E	G	K	E	V	A	V	D	A	I	F	D	S	V	S	V	A	T	T	Y	R	E	K	L	A	E	Q	G	I	I	F	C	S	F	G	E	A	I	H	D	H	P	E	L	V
Secondary structure
SS confidence
Disorder																																?	?	?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	K	Y	L	G	T	V	V	P	G	N	D	N	F	F	A	A	L	N	A	A	V	A	S	D	G	T	F	I	Y	V	P	K	G	V	R	C	P	M	E	L	S	T	Y	F	R	I	N	A	E	K	T	G	Q	F	E	R	T	I	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	A	D	E	D	S	Y	V	S	Y	I	E	G	C	S	A	P	V	R	D	S	Y	Q	L	H	A	A	V	V	E	V	I	I	H	K	N	A	E	V	K	Y	S	T	V	Q	N	W	F	P	G	D	N	N	T	G	G	I	L	N	F
Secondary structure
SS confidence
Disorder																																																		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	T	K	R	A	L	C	E	G	E	N	S	K	M	S	W	T	Q	S	E	T	G	S	A	I	T	W	K	Y	P	S	C	I	L	R	G	D	N	S	I	G	E	F	Y	S	V	A	L	T	S	G	H	Q	Q	A	D	T	G	T	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		M	I	H	I	G	K	N	T	K	S	T	I	I	S	K	G	I	S	A	G	H	S	Q	N	S	Y	R	G	L	V	K	I	M	P	T	A	T	N	A	R	N	F	T	Q	C	D	S	M	L	I	G	A	N	C	G	A	H	T	F	P
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?				?								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		Y	V	E	C	R	N	N	S	A	Q	L	E	H	E	A	T	T	S	R	I	G	E	D	Q	L	F	Y	C	L	Q	R	G	I	S	E	E	D	A	I	S	M	I	V	N	G	F	C	K	D	V	F	S	E	L	P	L	E	F	A	V
Secondary structure
SS confidence
Disorder																		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Sequence		E	A	Q	K	L	L	A	I	S	L	E	H	S	V	G
Secondary structure
SS confidence
Disorder														?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vh4 chain A Region: 53 - 494 Aligned: 393 Modelled: 420 Confidence: 100.0% Identity: 20% Fold: Single-stranded right-handed beta-helix Superfamily: Stabilizer of iron transporter SufD Family: Stabilizer of iron transporter SufD Phyre2 PDB 2dag chain A Region: 435 - 464 Aligned: 30 Modelled: 30 Confidence: 73.2% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) Phyre2 PDB 1whc chain A Region: 435 - 464 Aligned: 30 Modelled: 30 Confidence: 64.7% Identity: 13% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2dai chain A Region: 439 - 464 Aligned: 26 Modelled: 26 Confidence: 63.0% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) Phyre2 PDB 1dd9 chain A Region: 438 - 460 Aligned: 23 Modelled: 23 Confidence: 57.1% Identity: 22% Fold: DNA primase core Superfamily: DNA primase core Family: DNA primase DnaG catalytic core Phyre2 PDB 1dd9 chain A Region: 438 - 460 Aligned: 23 Modelled: 23 Confidence: 57.1% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core Phyre2 PDB 2crn chain A Region: 435 - 464 Aligned: 30 Modelled: 30 Confidence: 54.3% Identity: 17% PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein Phyre2 PDB 1vek chain A Region: 439 - 464 Aligned: 26 Modelled: 26 Confidence: 50.0% Identity: 15% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2o2k chain A Region: 436 - 462 Aligned: 27 Modelled: 27 Confidence: 45.8% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n Phyre2 PDB 1p32 chain A Region: 447 - 485 Aligned: 34 Modelled: 34 Confidence: 45.2% Identity: 18% Fold: Mitochondrial glycoprotein MAM33-like Superfamily: Mitochondrial glycoprotein MAM33-like Family: Mitochondrial glycoprotein MAM33-like Phyre2 PDB 1nui chain A domain 1 Region: 447 - 461 Aligned: 15 Modelled: 15 Confidence: 45.1% Identity: 33% Fold: DNA primase core Superfamily: DNA primase core Family: Primase fragment of primase-helicase protein Phyre2 PDB 1wiv chain A Region: 438 - 464 Aligned: 27 Modelled: 27 Confidence: 43.2% Identity: 22% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1msk chain A Region: 436 - 462 Aligned: 27 Modelled: 27 Confidence: 43.1% Identity: 22% Fold: Methionine synthase activation domain-like Superfamily: Methionine synthase activation domain-like Family: Methionine synthase SAM-binding domain Phyre2 PDB 3ic3 chain C Region: 447 - 470 Aligned: 24 Modelled: 24 Confidence: 40.4% Identity: 25% PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 Phyre2 PDB 1yqf chain A domain 1 Region: 447 - 485 Aligned: 34 Modelled: 34 Confidence: 39.3% Identity: 18% Fold: Mitochondrial glycoprotein MAM33-like Superfamily: Mitochondrial glycoprotein MAM33-like Family: Mitochondrial glycoprotein MAM33-like Phyre2 PDB 1kx5 chain D Region: 462 - 495 Aligned: 34 Modelled: 34 Confidence: 36.9% Identity: 29% Fold: Histone-fold Superfamily: Histone-fold Family: Nucleosome core histones Phyre2 PDB 3qv0 chain A Region: 447 - 485 Aligned: 34 Modelled: 34 Confidence: 35.8% Identity: 29% PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 Phyre2 PDB 1eqz chain B Region: 462 - 495 Aligned: 34 Modelled: 34 Confidence: 35.5% Identity: 26% Fold: Histone-fold Superfamily: Histone-fold Family: Nucleosome core histones Phyre2 PDB 2cpw chain A domain 1 Region: 438 - 464 Aligned: 27 Modelled: 27 Confidence: 34.4% Identity: 15% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2crn chain A domain 1 Region: 441 - 464 Aligned: 24 Modelled: 24 Confidence: 34.3% Identity: 17% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 1 d1vh4a_ 2 c2dagA_ 3 d1whca_ 4 c2daiA_ 5 d1dd9a_ 6 c1dd9A_ 7 c2crnA_ 8 d1veka_ 9 c2o2kA_ 10 d1p32a_ 11 d1nuia1 12 d1wiva_ 13 d1mska_ 14 c3ic3C_ 15 d1yqfa1 16 d1kx5d_ 17 c3qv0A_ 18 d1eqzb_ 19 d2cpwa1 20 d2crna1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vh4a_ 100.0 20 Fold:Single-stranded right-handed beta-helix Superfamily:Stabilizer of iron transporter SufD Family:Stabilizer of iron transporter SufD 2 c2dagA_ 73.2 10 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 3 d1whca_ 64.7 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 4 c2daiA_ 63.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 5 d1dd9a_ 57.1 22 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 6 c1dd9A_ 57.1 22 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 7 c2crnA_ 54.3 17 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 8 d1veka_ 50.0 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 9 c2o2kA_ 45.8 26 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 10 d1p32a_ 45.2 18 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 11 d1nuia1 45.1 33 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 12 d1wiva_ 43.2 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 13 d1mska_ 43.1 22 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain 14 c3ic3C_ 40.4 25 PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 15 d1yqfa1 39.3 18 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 16 d1kx5d_ 36.9 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 17 c3qv0A_ 35.8 29 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 18 d1eqzb_ 35.5 26 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 19 d2cpwa1 34.4 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 20 d2crna1 34.3 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 21 c1q57G_ not modelled 32.8 33 PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 22 c3jv1A_ not modelled 32.8 15 PDB header:hydrolase Chain: A: PDB Molecule:p22 protein; PDBTitle: crystal structure of the trypanosoma brucei p22 protein 23 d1s32d_ not modelled 31.5 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 24 d1n9pa_ not modelled 31.0 5 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 25 c2cpwA_ not modelled 30.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 26 d1tzyb_ not modelled 29.9 26 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 27 c2dakA_ not modelled 29.6 20 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 28 c2e4fA_ not modelled 29.2 7 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 29 c3sf5D_ not modelled 24.8 5 PDB header:chaperone Chain: D: PDB Molecule:urease accessory protein ureh; PDBTitle: crystal structure of helicobacter pylori urease accessory protein2 uref/h complex 30 c2wknE_ not modelled 24.6 25 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 31 d2csba4 not modelled 22.9 42 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 32 c1xdoB_ not modelled 22.7 10 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 33 d1vega_ not modelled 22.7 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 34 d1id3d_ not modelled 21.0 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 35 d2e1za2 not modelled 20.1 7 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 36 d1g99a2 not modelled 19.8 7 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 37 c2au3A_ not modelled 18.6 25 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 38 c2o8rA_ not modelled 17.4 18 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 39 d1ifya_ not modelled 16.5 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 40 c2iw0A_ not modelled 16.5 29 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 41 c3jurA_ not modelled 14.3 21 PDB header:hydrolase Chain: A: PDB Molecule:exo-poly-alpha-d-galacturonosidase; PDBTitle: the crystal structure of a hyperthermoactive exopolygalacturonase from2 thermotoga maritima 42 c1nuiA_ not modelled 13.5 33 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 43 c1tuuA_ not modelled 13.5 7 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 44 c2vyoA_ not modelled 13.5 14 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 45 d2g3qa1 not modelled 13.0 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 46 c1x3nA_ not modelled 13.0 12 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 47 c3khyA_ not modelled 13.0 14 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 48 c1sazA_ not modelled 12.8 19 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 49 c2zc1A_ not modelled 12.7 39 PDB header:hydrolase Chain: A: PDB Molecule:phosphotriesterase; PDBTitle: organophosphorus hydrolase from deinococcus radiodurans 50 d1rfza_ not modelled 12.4 10 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 51 d1oqya1 not modelled 12.1 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 52 c3iz6M_ not modelled 11.9 21 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 53 d1pgya_ not modelled 11.9 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 54 d1v3aa_ not modelled 11.6 22 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 55 c2gm2A_ not modelled 11.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 56 d1hiob_ not modelled 11.3 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 57 c2uveA_ not modelled 11.1 17 PDB header:hydrolase Chain: A: PDB Molecule:exopolygalacturonase; PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase 58 c2gu3A_ not modelled 11.1 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ypmb protein; PDBTitle: ypmb protein from bacillus subtilis 59 d1saza2 not modelled 11.1 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 60 d1ivza_ not modelled 11.1 8 Fold:Ferredoxin-like Superfamily:SEA domain Family:SEA domain 61 c2xu6B_ not modelled 11.0 12 PDB header:protein binding Chain: B: PDB Molecule:mdv1 coiled coil; PDBTitle: mdv1 coiled coil domain 62 c2k2eA_ not modelled 10.9 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bp2786; PDBTitle: solution nmr structure of bordetella pertussis protein2 bp2786, a mth938-like domain. northeast structural3 genomics consortium target ber31 63 d1p3mh_ not modelled 10.4 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 64 c3e3vA_ not modelled 10.3 9 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 65 d2iw0a1 not modelled 10.3 29 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 66 c2d9sA_ not modelled 10.2 13 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 67 c3ff5B_ not modelled 10.1 10 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 68 d1yqga1 not modelled 9.9 11 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 69 d1k8ba_ not modelled 9.3 29 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 70 c1k98A_ not modelled 9.1 22 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 71 c2iirJ_ not modelled 9.0 14 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 72 c2xznM_ not modelled 9.0 18 PDB header:ribosome Chain: M: PDB Molecule:rps18e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 73 c3flvA_ not modelled 8.7 20 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa-binding domain-containing protein 5; PDBTitle: the crystal structure of human acyl-coenzymea binding domain2 containing 5 74 c2zkqm_ not modelled 8.5 18 PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 75 c2qh9B_ not modelled 8.5 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 76 c3rhgA_ not modelled 8.4 25 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 77 c2e0tA_ not modelled 8.2 28 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 26; PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens 78 c3d5lA_ not modelled 8.2 12 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 79 c2lm4A_ not modelled 8.0 28 PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a 80 c2w85A_ not modelled 7.9 8 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 81 c3my3A_ not modelled 7.9 21 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 82 c3m66A_ not modelled 7.8 21 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 83 c2y96A_ not modelled 7.5 36 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase dupd1; PDBTitle: structure of human dual-specificity phosphatase 27 84 c3fp5A_ not modelled 7.5 16 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa binding protein; PDBTitle: crystal structure of acbp from moniliophthora perniciosa 85 c3dntB_ not modelled 7.5 12 PDB header:transferase Chain: B: PDB Molecule:protein hipa; PDBTitle: structures of mdt proteins 86 d2gcla1 not modelled 7.4 8 Fold:PH domain-like barrel Superfamily:PH domain-like Family:SSRP1-like 87 d1oqya2 not modelled 7.2 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 88 c3p04B_ not modelled 7.2 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 89 c2h9aB_ not modelled 7.2 22 PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein 90 d1bhea_ not modelled 7.0 31 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 91 d1y02a1 not modelled 7.0 31 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 92 d2ahra1 not modelled 7.0 15 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 93 c2do6A_ not modelled 6.9 6 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 94 d1kv5a_ not modelled 6.9 19 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 95 d1oiza1 not modelled 6.9 15 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 96 c3p04A_ not modelled 6.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 97 d1uw4a_ not modelled 6.9 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Smg-4/UPF3 98 c2pyhB_ not modelled 6.8 45 PDB header:isomerase Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide 99 c3p4iA_ not modelled 6.6 19 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0