Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	K	Y	R	L	S	E	E	Q	R	A	F	S	Y	Q	E	D	G	T	K	K	N	V	L	L	R	Q	I	I	A	I	S	D	F	N	D	V	I	A	G	T	A	G	G	W	I	D	R	E	T	V	L	A	Q	E	G	N	C	W
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?												?																					?			?		?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	Y	D	Q	N	A	I	A	F	G	G	A	V	I	S	G	N	T	R	I	T	G	T	S	V	L	W	G	E	V	Y	A	T	D	N	V	W	I	D	N	S	E	I	S	Q	G	A	Y	I	S	D	S	V	T	I	H	D	S	L	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	G	Q	C	R	I	F	G	H	A	L	I	D	Q	H	S	M	I	V	A	A	Q	G	L	T	P	D	H	Q	L	L	L	Q	I	Y	D	R	A	R	V	S	A	S	R	I	V	H	Q	A	Q	I	Y	G	D	A	V	V	R	Y	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	I	E	H	R	A	E	V	F	D	F	A	S	I	E	G	N	E	E	N	N	V	W	L	C	D	C	A	K	V	Y	G	H	A	Q	V	K	A	G	I	E	E	D	A	I	P	T	I	H	Y	S	S	Q	V	A	E	Y	A	I	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	G	N	C	V	L	K	H	H	V	L	V	G	G	N	A	V	V	R	G	G	P	I	L	L	D	E	H	V	V	I	Q	G	E	S	R	I	T	G	A	V	I	I	E	N	H	V	E	L	T	D	H	A	V	V	E	A	F	D	G
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Sequence		D	T	V	H	V	R	G	P	K	V	I	N	G	E	E	R	I	T	R	T	P	L	A	G	L	L
Secondary structure
SS confidence
Disorder		?																				?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2f9c chain A domain 1 Region: 3 - 322 Aligned: 320 Modelled: 320 Confidence: 100.0% Identity: 65% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: YdcK-like Phyre2 PDB 3pmo chain A Region: 78 - 304 Aligned: 212 Modelled: 226 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution Phyre2 PDB 2iu9 chain C Region: 29 - 316 Aligned: 256 Modelled: 259 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) Phyre2 PDB 3eh0 chain C Region: 3 - 316 Aligned: 288 Modelled: 295 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli Phyre2 PDB 3i3a chain C Region: 79 - 319 Aligned: 187 Modelled: 187 Confidence: 99.9% Identity: 15% PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa Phyre2 PDB 2jf2 chain A domain 1 Region: 80 - 319 Aligned: 191 Modelled: 192 Confidence: 99.9% Identity: 16% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 1j2z chain A Region: 101 - 319 Aligned: 188 Modelled: 201 Confidence: 99.9% Identity: 14% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 3r0s chain A Region: 102 - 316 Aligned: 175 Modelled: 180 Confidence: 99.8% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni Phyre2 PDB 3fsb chain B Region: 86 - 316 Aligned: 202 Modelled: 215 Confidence: 99.8% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose Phyre2 PDB 3c8v chain A Region: 72 - 321 Aligned: 196 Modelled: 199 Confidence: 99.8% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution Phyre2 PDB 2oi6 chain A Region: 119 - 322 Aligned: 188 Modelled: 204 Confidence: 99.6% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 Phyre2 PDB 1hm8 chain A Region: 105 - 316 Aligned: 183 Modelled: 205 Confidence: 99.6% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a Phyre2 PDB 2v0h chain A Region: 123 - 316 Aligned: 184 Modelled: 190 Confidence: 99.6% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) Phyre2 PDB 2oi6 chain A domain 1 Region: 82 - 316 Aligned: 184 Modelled: 184 Confidence: 99.6% Identity: 15% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: GlmU C-terminal domain-like Phyre2 PDB 3bsw chain A domain 1 Region: 199 - 316 Aligned: 117 Modelled: 118 Confidence: 99.6% Identity: 16% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: PglD-like Phyre2 PDB 1g97 chain A domain 1 Region: 123 - 316 Aligned: 179 Modelled: 194 Confidence: 99.6% Identity: 17% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: GlmU C-terminal domain-like Phyre2 PDB 3srt chain B Region: 201 - 320 Aligned: 119 Modelled: 120 Confidence: 99.5% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630 Phyre2 PDB 3eg4 chain A Region: 201 - 321 Aligned: 119 Modelled: 121 Confidence: 99.5% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308 Phyre2 PDB 3cj8 chain B Region: 200 - 316 Aligned: 117 Modelled: 117 Confidence: 99.5% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583 Phyre2 PDB 3mqh chain D Region: 179 - 316 Aligned: 133 Modelled: 138 Confidence: 99.5% Identity: 14% PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid Phyre2 1 d2f9ca1 2 c3pmoA_ 3 c2iu9C_ 4 c3eh0C_ 5 c3i3aC_ 6 d2jf2a1 7 d1j2za_ 8 c3r0sA_ 9 c3fsbB_ 10 c3c8vA_ 11 c2oi6A_ 12 c1hm8A_ 13 c2v0hA_ 14 d2oi6a1 15 d3bswa1 16 d1g97a1 17 c3srtB_ 18 c3eg4A_ 19 c3cj8B_ 20 c3mqhD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2f9ca1 100.0 65 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like 2 c3pmoA_ 100.0 13 PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution 3 c2iu9C_ 100.0 19 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 4 c3eh0C_ 100.0 13 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 5 c3i3aC_ 99.9 15 PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa 6 d2jf2a1 99.9 16 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 7 d1j2za_ 99.9 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 8 c3r0sA_ 99.8 18 PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni 9 c3fsbB_ 99.8 13 PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose 10 c3c8vA_ 99.8 12 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution 11 c2oi6A_ 99.6 13 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 12 c1hm8A_ 99.6 17 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a 13 c2v0hA_ 99.6 14 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) 14 d2oi6a1 99.6 15 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 15 d3bswa1 99.6 16 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:PglD-like 16 d1g97a1 99.6 17 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 17 c3srtB_ 99.5 16 PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630 18 c3eg4A_ 99.5 13 PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308 19 c3cj8B_ 99.5 19 PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583 20 c3mqhD_ 99.5 14 PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid 21 c3jqyB_ not modelled 99.5 11 PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo 22 c3fttA_ not modelled 99.5 12 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus 23 c2ic7A_ not modelled 99.5 16 PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus 24 d1ocxa_ not modelled 99.4 15 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 25 c3ectA_ not modelled 99.4 11 PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae 26 d1krra_ not modelled 99.4 17 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 27 c1t3dB_ not modelled 99.4 23 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 28 d1t3da_ not modelled 99.4 23 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 29 d1ssqa_ not modelled 99.4 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 30 d3tdta_ not modelled 99.3 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD 31 c2wlgA_ not modelled 99.3 13 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 32 d1qrea_ not modelled 99.3 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 33 c1qreA_ not modelled 99.3 11 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila 34 d1mr7a_ not modelled 99.3 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 35 c3mc4A_ not modelled 99.3 16 PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis 36 c3q1xA_ not modelled 99.3 12 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine 37 c3f1xA_ not modelled 99.2 18 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62. 38 c3ixcA_ not modelled 99.2 11 PDB header:transferase Chain: A: PDB Molecule:hexapeptide transferase family protein; PDBTitle: crystal structure of hexapeptide transferase family protein from2 anaplasma phagocytophilum 39 c3r3rA_ not modelled 99.1 13 PDB header:transferase Chain: A: PDB Molecule:ferripyochelin binding protein; PDBTitle: structure of the yrda ferripyochelin binding protein from salmonella2 enterica 40 d1xata_ not modelled 99.1 9 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 41 c2ggqA_ not modelled 99.1 10 PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii 42 c3eevC_ not modelled 99.1 8 PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor 43 d1v3wa_ not modelled 99.1 12 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 44 d1xhda_ not modelled 99.0 17 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 45 c3kwdA_ not modelled 99.0 13 PDB header:lyase, protein binding, photosynthesis Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein; PDBTitle: inactive truncation of the beta-carboxysomal gamma-carbonic anhydrase,2 ccmm, form 1 46 c3fsyC_ not modelled 98.9 22 PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis 47 c3r1wA_ not modelled 98.9 14 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of a carbonic anhydrase from a crude oil degrading2 psychrophilic library 48 c3d98A_ not modelled 98.8 15 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form 49 c2qkxA_ not modelled 98.8 14 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate 50 c1yp3C_ not modelled 98.6 10 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 51 d1yp2a1 not modelled 98.5 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 52 c2rijA_ not modelled 98.4 16 PDB header:transferase Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution 53 d1fxja1 not modelled 98.3 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 54 c1fwyA_ not modelled 98.1 16 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac 55 c3brkX_ not modelled 98.0 19 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 56 d2jnga1 not modelled 94.5 15 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:CPH domain 57 c2jufA_ not modelled 94.4 15 PDB header:gene regulation Chain: A: PDB Molecule:p53-associated parkin-like cytoplasmic protein; PDBTitle: nmr solution structure of parc cph domain. nesg target2 hr3443b/sgc-toronto 58 c2zv4O_ not modelled 42.8 21 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 59 c3anwB_ not modelled 41.3 19 PDB header:replication Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: a protein complex essential initiation of dna replication 60 c3gf5A_ not modelled 41.0 21 PDB header:structural protein Chain: A: PDB Molecule:major vault protein; PDBTitle: crystal structure of the p21 r1-r7 n-terminal domain of murine mvp 61 c1y7xA_ not modelled 40.8 29 PDB header:structural protein, protein binding Chain: A: PDB Molecule:major vault protein; PDBTitle: solution structure of a two-repeat fragment of major vault2 protein 62 c2i5kB_ not modelled 23.3 15 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p 63 c1vi7A_ not modelled 21.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein 64 d2icya1 not modelled 15.0 17 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 65 c1whsB_ not modelled 14.7 27 PDB header:serine carboxypeptidase Chain: B: PDB Molecule:serine carboxypeptidase ii; PDBTitle: structure of the complex of l-benzylsuccinate with wheat serine2 carboxypeptidase ii at 2.0 angstroms resolution 66 c2k6lA_ not modelled 13.4 17 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors 67 d1i1ja_ not modelled 10.8 13 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 68 d1yw6a1 not modelled 10.8 13 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:AstE/AspA-like 69 d1bb9a_ not modelled 10.8 17 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 70 c1bb9A_ not modelled 10.8 17 PDB header:transferase Chain: A: PDB Molecule:amphiphysin 2; PDBTitle: crystal structure of the sh3 domain from rat amphiphysin 2 71 d1loua_ not modelled 10.7 43 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 72 d2qalf1 not modelled 10.3 43 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 73 d1qjha_ not modelled 10.1 43 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 74 d2g9da1 not modelled 9.9 16 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:AstE/AspA-like 75 c2jkuA_ not modelled 9.8 38 PDB header:ligase Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase 76 d1jw3a_ not modelled 9.8 10 Fold:MTH1598-like Superfamily:MTH1598-like Family:MTH1598-like 77 d1qlya_ not modelled 9.6 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 78 c2ow7A_ not modelled 9.2 28 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride 79 c1scfA_ not modelled 8.9 33 PDB header:hormone/growth factor Chain: A: PDB Molecule:stem cell factor; PDBTitle: human recombinant stem cell factor 80 d1scfa_ not modelled 8.9 33 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 81 d1wb8a1 not modelled 8.8 38 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 82 c2qbbF_ not modelled 8.8 43 PDB header:ribosome Chain: F: PDB Molecule:30s ribosomal protein s6; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 30s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. 83 d1b06a1 not modelled 8.8 13 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 84 c1o7dA_ not modelled 8.4 33 PDB header:hydrolase Chain: A: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 85 d1edya_ not modelled 8.4 3 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Alpha-macroglobulin receptor domain Family:Alpha-macroglobulin receptor domain 86 c1ov3A_ not modelled 8.0 20 PDB header:oxidoreductase activator Chain: A: PDB Molecule:neutrophil cytosol factor 1; PDBTitle: structure of the p22phox-p47phox complex 87 c3bbnF_ not modelled 7.5 29 PDB header:ribosome Chain: F: PDB Molecule:ribosomal protein s6; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 88 d2j5aa1 not modelled 7.4 29 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 89 d1ov3a1 not modelled 7.3 19 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 90 c1gxsB_ not modelled 7.3 24 PDB header:lyase Chain: B: PDB Molecule:p-(s)-hydroxymandelonitrile lyase chain b; PDBTitle: crystal structure of hydroxynitrile lyase from sorghum2 bicolor in complex with inhibitor benzoic acid: a novel3 cyanogenic enzyme 91 d1kk8a1 not modelled 7.1 50 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 92 d2fcta1 not modelled 6.9 32 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 93 c3iuwA_ not modelled 6.8 10 PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution 94 d1scfc_ not modelled 6.7 33 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 95 c3mp2A_ not modelled 6.6 67 PDB header:hydrolase Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: crystal structure of transmissible gastroenteritis virus papain-like2 protease 1 96 c2fe8B_ not modelled 6.5 29 PDB header:hydrolase Chain: B: PDB Molecule:replicase polyprotein 1ab; PDBTitle: sars coronavirus papain-like protease: structure of a viral2 deubiquitinating enzyme 97 c2csiA_ not modelled 6.4 24 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:rim binding protein 2; PDBTitle: solution structure of the third sh3 domain of human rim-2 binding protein 2 98 c1t0jA_ not modelled 6.4 9 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 99 d1bv8a_ not modelled 6.4 9 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Alpha-macroglobulin receptor domain Family:Alpha-macroglobulin receptor domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0