PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mp2A_

Fold library id	PDB Header	Molecule	Title
c3mp2A_	PDB header: hydrolase	Chain: A: PDB Molecule: non-structural protein 3;	PDBTitle: crystal structure of transmissible gastroenteritis virus papain-like2 protease 1

Links to external resources
Added to library: Sat Sep 18 08:52:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S L P P F K T T N L N G K I I L K Q G D N N C W I N A C C Y Q L Q A F D F F N N E A W E K F K K G D V M D F V N L C Y A A T T L A R G H S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T
T T
T T T
T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D A E Y L L E L M L N D Y S T A K I V L A A K C G C G E K E I V L E R A V F K L T P L K E S F N Y G V C G D C M Q V N T C R F L S V E G S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S S
B S S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V F V H D I L S K Q T P E A M F V V K P V M H A V Y T G T T Q N G H Y M V D D I E H G Y C V D G M G I K P L K K R C Y T S T L F I N A N V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G B S S
S S
T T T
T T T T T T
S

.

Sequence T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	L	P	P	F	K	T	T	N	L	N	G	K	I	I	L	K	Q	G	D	N	N	C	W	I	N	A	C	C	Y	Q	L	Q	A	F	D	F	F	N	N	E	A	W	E	K	F	K	K	G	D	V	M	D	F	V	N	L	C	Y	A	A	T	T	L	A	R	G	H	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T								T	T												T	T		T	T										T	T	T														T			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	A	E	Y	L	L	E	L	M	L	N	D	Y	S	T	A	K	I	V	L	A	A	K	C	G	C	G	E	K	E	I	V	L	E	R	A	V	F	K	L	T	P	L	K	E	S	F	N	Y	G	V	C	G	D	C	M	Q	V	N	T	C	R	F	L	S	V	E	G	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T													T	T										S				S			B	S	S								T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	F	V	H	D	I	L	S	K	Q	T	P	E	A	M	F	V	V	K	P	V	M	H	A	V	Y	T	G	T	T	Q	N	G	H	Y	M	V	D	D	I	E	H	G	Y	C	V	D	G	M	G	I	K	P	L	K	K	R	C	Y	T	S	T	L	F	I	N	A	N	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S				G	G	G	B	S	S			S							S		T	T	T								T	T	T	T					T	T								S
	.
Sequence	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)