Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	Y	R	L	I	S	A	F	V	L	I	P	V	V	I	A	A	L	F	L	L	P	P	V	G	F	A	I	V	T	L	V	V	C	M	L	A	A	W	E	W	G	Q	L	S	G	F	T	T	R	S	Q	R	V	W	L	A	V
Secondary structure
SS confidence
Disorder		?	?	?	?																																													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	C	G	L	L	L	A	L	M	L	F	L	L	P	E	Y	H	R	N	I	H	Q	P	L	V	E	I	S	L	W	A	S	L	G	W	W	I	V	A	L	L	L	V	L	F	Y	P	G	S	A	A	I	W	R	N	S	K	T	L	R
Secondary structure
SS confidence
Disorder																																																	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	I	F	G	V	L	T	I	V	P	F	F	W	G	M	L	A	L	R	A	W	H	Y	D	E	N	H	Y	S	G	A	I	W	L	L	Y	V	M	I	L	V	W	G	A	D	S	G	A	Y	M	F	G	K	L	F	G	K	H	K	L
Secondary structure
SS confidence
Disorder																							?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	P	K	V	S	P	G	K	T	W	Q	G	F	I	G	G	L	A	T	A	A	V	I	S	W	G	Y	G	M	W	A	N	L	D	V	A	P	V	T	L	L	I	C	S	I	V	A	A	L	A	S	V	L	G	D	L	T	E	S	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Sequence		F	K	R	E	A	G	I	K	D	S	G	H	L	I	P	G	H	G	G	I	L	D	R	I	D	S	L	T	A	A	V	P	V	F	A	C	L	L	L	L	V	F	R	T	L
Secondary structure
SS confidence
Disorder																																												?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3b9y chain A Region: 97 - 258 Aligned: 150 Modelled: 162 Confidence: 93.7% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Phyre2 PDB 1u7g chain A Region: 96 - 259 Aligned: 148 Modelled: 161 Confidence: 82.0% Identity: 17% Fold: Ammonium transporter Superfamily: Ammonium transporter Family: Ammonium transporter Phyre2 PDB 3r2u chain C Region: 231 - 258 Aligned: 27 Modelled: 28 Confidence: 53.6% Identity: 22% PDB header:hydrolase Chain: C: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col Phyre2 PDB 2p97 chain A domain 1 Region: 235 - 268 Aligned: 33 Modelled: 34 Confidence: 52.1% Identity: 24% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Ava3068-like Phyre2 PDB 2xf4 chain A Region: 233 - 258 Aligned: 26 Modelled: 26 Confidence: 50.9% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase; PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl Phyre2 PDB 2gcu chain D Region: 235 - 258 Aligned: 24 Modelled: 24 Confidence: 47.1% Identity: 21% PDB header:hydrolase Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3; PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580 Phyre2 PDB 1mqo chain A Region: 233 - 263 Aligned: 31 Modelled: 31 Confidence: 45.7% Identity: 19% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Zn metallo-beta-lactamase Phyre2 PDB 3tp9 chain B Region: 233 - 258 Aligned: 25 Modelled: 26 Confidence: 38.7% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains Phyre2 PDB 3hd6 chain A Region: 20 - 258 Aligned: 222 Modelled: 236 Confidence: 38.4% Identity: 13% PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Phyre2 PDB 1nxc chain A Region: 235 - 279 Aligned: 42 Modelled: 45 Confidence: 36.2% Identity: 19% Fold: alpha/alpha toroid Superfamily: Seven-hairpin glycosidases Family: Class I alpha-1;2-mannosidase, catalytic domain Phyre2 PDB 1xm8 chain A Region: 233 - 265 Aligned: 32 Modelled: 33 Confidence: 35.9% Identity: 16% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Glyoxalase II (hydroxyacylglutathione hydrolase) Phyre2 PDB 1qh5 chain A Region: 235 - 262 Aligned: 28 Modelled: 28 Confidence: 34.9% Identity: 7% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Glyoxalase II (hydroxyacylglutathione hydrolase) Phyre2 PDB 1znb chain A Region: 235 - 268 Aligned: 34 Modelled: 34 Confidence: 34.8% Identity: 18% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Zn metallo-beta-lactamase Phyre2 PDB 2zwr chain A Region: 235 - 258 Aligned: 23 Modelled: 24 Confidence: 34.2% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein; PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8 Phyre2 PDB 1dl2 chain A Region: 235 - 279 Aligned: 42 Modelled: 45 Confidence: 31.1% Identity: 17% Fold: alpha/alpha toroid Superfamily: Seven-hairpin glycosidases Family: Class I alpha-1;2-mannosidase, catalytic domain Phyre2 PDB 2aio chain A domain 1 Region: 233 - 263 Aligned: 29 Modelled: 31 Confidence: 30.2% Identity: 21% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Zn metallo-beta-lactamase Phyre2 PDB 1bh9 chain B Region: 232 - 257 Aligned: 26 Modelled: 26 Confidence: 28.7% Identity: 19% Fold: Histone-fold Superfamily: Histone-fold Family: TBP-associated factors, TAFs Phyre2 PDB 3hnn chain D Region: 235 - 263 Aligned: 28 Modelled: 29 Confidence: 27.1% Identity: 14% PDB header:oxidoreductase Chain: D: PDB Molecule:putative diflavin flavoprotein a 5; PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a Phyre2 PDB 2qed chain A domain 1 Region: 233 - 262 Aligned: 29 Modelled: 30 Confidence: 25.1% Identity: 14% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Glyoxalase II (hydroxyacylglutathione hydrolase) Phyre2 PDB 3bbo chain U Region: 177 - 191 Aligned: 14 Modelled: 15 Confidence: 24.8% Identity: 14% PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l22; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 1 c3b9yA_ 2 d1u7ga_ 3 c3r2uC_ 4 d2p97a1 5 c2xf4A_ 6 c2gcuD_ 7 d1mqoa_ 8 c3tp9B_ 9 c3hd6A_ 10 d1nxca_ 11 d1xm8a_ 12 d1qh5a_ 13 d1znba_ 14 c2zwrA_ 15 d1dl2a_ 16 d2aioa1 17 d1bh9b_ 18 c3hnnD_ 19 d2qeda1 20 c3bboU_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3b9yA_ 93.7 15 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 2 d1u7ga_ 82.0 17 Fold:Ammonium transporter Superfamily:Ammonium transporter Family:Ammonium transporter 3 c3r2uC_ 53.6 22 PDB header:hydrolase Chain: C: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col 4 d2p97a1 52.1 24 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Ava3068-like 5 c2xf4A_ 50.9 27 PDB header:hydrolase Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase; PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl 6 c2gcuD_ 47.1 21 PDB header:hydrolase Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3; PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580 7 d1mqoa_ 45.7 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 8 c3tp9B_ 38.7 20 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains 9 c3hd6A_ 38.4 13 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 10 d1nxca_ 36.2 19 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 11 d1xm8a_ 35.9 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 12 d1qh5a_ 34.9 7 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 13 d1znba_ 34.8 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 14 c2zwrA_ 34.2 35 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein; PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8 15 d1dl2a_ 31.1 17 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 16 d2aioa1 30.2 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 17 d1bh9b_ 28.7 19 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 18 c3hnnD_ 27.1 14 PDB header:oxidoreductase Chain: D: PDB Molecule:putative diflavin flavoprotein a 5; PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a 19 d2qeda1 25.1 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 20 c3bboU_ 24.8 14 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l22; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 21 c2zo4A_ not modelled 24.6 32 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: crystal structure of metallo-beta-lactamase family protein ttha14292 from thermus thermophilus hb8 22 c1ze2B_ not modelled 24.2 29 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 23 d1m2xa_ not modelled 23.6 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 24 d1bk8a_ not modelled 21.8 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 25 d2gycq1 not modelled 21.7 36 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 26 c1s1iN_ not modelled 20.6 33 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l17-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 27 d2ey4a2 not modelled 20.0 30 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 28 c3l6nA_ not modelled 19.6 21 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystal structure of metallo-beta-lactamase ind-7 29 c1krfA_ not modelled 19.4 19 PDB header:hydrolase Chain: A: PDB Molecule:mannosyl-oligosaccharide alpha-1,2-mannosidase; PDBTitle: structure of p. citrinum alpha 1,2-mannosidase reveals the basis for2 differences in specificity of the er and golgi class i enzymes 30 d2ri9a1 not modelled 19.4 19 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 31 c1vmeB_ not modelled 18.9 17 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 32 d1r3ea2 not modelled 18.4 29 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 33 d1ycga2 not modelled 18.0 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 34 d2gmna1 not modelled 17.8 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 35 c2yz3B_ not modelled 16.8 21 PDB header:hydrolase Chain: B: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor 36 d1hcua_ not modelled 16.7 21 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 37 c2b2hA_ not modelled 16.0 10 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) 38 c3pisA_ not modelled 15.8 25 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 39 c2p18A_ not modelled 15.6 8 PDB header:hydrolase Chain: A: PDB Molecule:glyoxalase ii; PDBTitle: crystal structure of the leishmania infantum glyoxalase ii 40 d1sgva2 not modelled 15.5 26 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 41 d1k8wa5 not modelled 15.5 30 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 42 d2nn6h2 not modelled 15.4 33 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:ECR1 N-terminal domain-like 43 c1g6iA_ not modelled 15.1 16 PDB header:hydrolase Chain: A: PDB Molecule:class i alpha-1,2-mannosidase; PDBTitle: crystal structure of the yeast alpha-1,2-mannosidase with bound 1-2 deoxymannojirimycin at 1.59 a resolution 44 c1k8wA_ not modelled 15.0 30 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 45 d1ko3a_ not modelled 15.0 23 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 46 c1x9dA_ not modelled 14.8 14 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1, PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue 47 d1x9da1 not modelled 14.8 14 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 48 d1jv1a_ not modelled 14.7 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 49 d2foka4 not modelled 14.6 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease FokI, C-terminal (catalytic) domain 50 d1pcfa_ not modelled 14.5 42 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Transcriptional coactivator PC4 C-terminal domain 51 d2icya2 not modelled 14.3 40 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 52 d1ayja_ not modelled 14.1 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 53 c3uaiA_ not modelled 13.9 33 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 54 c2fhxB_ not modelled 13.8 28 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:spm-1; PDBTitle: pseudomonas aeruginosa spm-1 metallo-beta-lactamase 55 d1f0la3 not modelled 13.4 67 Fold:Toxins' membrane translocation domains Superfamily:Diphtheria toxin, middle domain Family:Diphtheria toxin, middle domain 56 c2q9uB_ not modelled 13.3 10 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 57 c3oc9A_ not modelled 13.3 33 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica 58 d1gu2a_ not modelled 13.1 46 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 59 d1b0aa2 not modelled 12.9 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 60 d2apoa2 not modelled 12.5 38 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 61 c3pesA_ not modelled 12.4 67 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein gp49; PDBTitle: crystal structure of uncharacterized protein from pseudomonas phage2 yua 62 c3jywN_ not modelled 11.7 33 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l17(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 63 d1vm8a_ not modelled 11.4 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 64 c2e55D_ not modelled 11.1 43 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 65 c3lvzA_ not modelled 11.0 17 PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum 66 c2oefA_ not modelled 11.0 42 PDB header:transferase Chain: A: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2, PDBTitle: open and closed structures of the udp-glucose2 pyrophosphorylase from leishmania major 67 c3h0dB_ not modelled 10.8 15 PDB header:transcription/dna Chain: B: PDB Molecule:ctsr; PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex 68 d1e5da2 not modelled 10.7 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 69 c1sgvA_ not modelled 10.6 29 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 70 c2ey4A_ not modelled 10.4 33 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 71 c4a17Q_ not modelled 10.3 22 PDB header:ribosome Chain: Q: PDB Molecule:rpl17; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 72 d1jjta_ not modelled 10.2 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 73 c3gueB_ not modelled 9.9 42 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: crystal structure of udp-glucose phosphorylase from trypanosoma2 brucei, (tb10.389.0330) 74 d1vqor1 not modelled 9.8 11 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 75 c3fvyA_ not modelled 9.6 36 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl-peptidase 3; PDBTitle: crystal structure of human dipeptidyl peptidase iii 76 c2q4jB_ not modelled 9.3 33 PDB header:transferase Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase 77 d1ecia_ not modelled 9.3 50 Fold:Ectatomin subunits Superfamily:Ectatomin subunits Family:Ectatomin subunits 78 c3sd9B_ not modelled 9.3 19 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases 79 c2yqsA_ not modelled 9.1 25 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 80 c3dmpD_ not modelled 9.1 29 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 81 c3spuB_ not modelled 9.0 14 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure 82 d1i5ea_ not modelled 8.9 33 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 83 c2i5kB_ not modelled 8.9 33 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p 84 c1ychD_ not modelled 8.7 16 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 85 d1i4ja_ not modelled 8.6 33 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 86 c2ftcM_ not modelled 8.5 29 PDB header:ribosome Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 87 c2apoA_ not modelled 8.4 38 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 88 c3cskA_ not modelled 8.4 29 PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidyl-peptidase 3; PDBTitle: structure of dpp iii from saccharomyces cerevisiae 89 d1a4ia2 not modelled 8.4 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 90 c3mv2A_ not modelled 8.3 14 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 91 c2fs1A_ not modelled 8.3 33 PDB header:protein binding Chain: A: PDB Molecule:psd-1; PDBTitle: solution structure of psd-1 92 d1gjsa_ not modelled 8.3 33 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:GA module, an albumin-binding domain 93 c2zvrA_ not modelled 8.1 36 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 94 d2q0ia1 not modelled 8.0 35 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:PqsE-like 95 c2zkrr_ not modelled 8.0 22 PDB header:ribosomal protein/rna Chain: R: PDB Molecule:rna expansion segment es39 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 96 c1e5dA_ not modelled 7.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 97 d1edza2 not modelled 7.9 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 98 c3adrA_ not modelled 7.7 21 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein st1585; PDBTitle: the first crystal structure of an archaeal metallo-beta-lactamase2 superfamily protein; st1585 from sulfolobus tokodaii 99 c3iz5V_ not modelled 7.7 22 PDB header:ribosome Chain: V: PDB Molecule:60s ribosomal protein l17 (l22p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0