PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2zkrr_

Fold library id	PDB Header	Molecule	Title
c2zkrr_	PDB header: ribosomal protein/rna	Chain: R: PDB Molecule: rna expansion segment es39 part i;	PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map

Links to external resources
Added to library: Tue Mar 16 12:56:27 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V R Y S L D P E N P T K S C K S R G S N L R V H F K N T R E T A Q A I K G M H I R K A T K Y L K D V T L Q K Q C V P F R R Y N G G V G R C A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T T
S
S
T T S B T S S
S S S
T T
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q A K Q W G W T Q G R W P K K S A E F L L H M L K N A E S N A E L K G L D V D S L V I E H I Q V N A P K M R R R T Y R A H G R I N P Y M S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S
S
S B
T S
T T T
T T T

. . . . . . . . . 150

Sequence C H I E M I L T E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	R	Y	S	L	D	P	E	N	P	T	K	S	C	K	S	R	G	S	N	L	R	V	H	F	K	N	T	R	E	T	A	Q	A	I	K	G	M	H	I	R	K	A	T	K	Y	L	K	D	V	T	L	Q	K	Q	C	V	P	F	R	R	Y	N	G	G	V	G	R	C	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S			S		T	T	T								S			S													T	T	S	B														T	S	S					S	S	S		T	T			B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	A	K	Q	W	G	W	T	Q	G	R	W	P	K	K	S	A	E	F	L	L	H	M	L	K	N	A	E	S	N	A	E	L	K	G	L	D	V	D	S	L	V	I	E	H	I	Q	V	N	A	P	K	M	R	R	R	T	Y	R	A	H	G	R	I	N	P	Y	M	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	S		S		S	B																										T	S		T	T	T																				T	T	T
	.	.	.	.	.	.	.	.	.	150
Sequence	C	H	I	E	M	I	L	T	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)