Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	H	C	P	L	C	Q	H	A	A	H	A	R	T	S	R	Y	I	T	D	T	T	K	E	R	Y	H	Q	C	Q	N	V	N	C	S	A	T	F	I	T	Y	E	S	V	Q	R	Y	I	V	K	P	G	E	V	H	V	V	R	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?															?																																			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.
Sequence		H	P	L	P	S	G	Q	Q	I	M	W	M
Secondary structure
SS confidence
Disorder		?	?		?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tfi chain A Region: 1 - 40 Aligned: 38 Modelled: 40 Confidence: 96.0% Identity: 18% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1twf chain I domain 2 Region: 2 - 40 Aligned: 37 Modelled: 39 Confidence: 95.7% Identity: 24% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1qyp chain A Region: 2 - 40 Aligned: 37 Modelled: 39 Confidence: 95.6% Identity: 19% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1pqv chain S Region: 1 - 42 Aligned: 40 Modelled: 42 Confidence: 94.4% Identity: 15% PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex Phyre2 PDB 1y1y chain S Region: 1 - 42 Aligned: 40 Modelled: 42 Confidence: 93.7% Identity: 15% PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex Phyre2 PDB 1i3q chain I Region: 2 - 40 Aligned: 37 Modelled: 39 Confidence: 93.4% Identity: 24% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Phyre2 PDB 3h0g chain I Region: 3 - 40 Aligned: 36 Modelled: 38 Confidence: 93.2% Identity: 22% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Phyre2 PDB 2hu9 chain B Region: 2 - 39 Aligned: 38 Modelled: 38 Confidence: 92.0% Identity: 16% PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain Phyre2 PDB 1dgs chain A domain 1 Region: 3 - 35 Aligned: 23 Modelled: 33 Confidence: 87.8% Identity: 35% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: NAD+-dependent DNA ligase, domain 3 Phyre2 PDB 4a17 chain Y Region: 3 - 39 Aligned: 27 Modelled: 37 Confidence: 79.6% Identity: 30% PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. Phyre2 PDB 1wii chain A Region: 2 - 41 Aligned: 35 Modelled: 40 Confidence: 79.0% Identity: 29% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Putative zinc binding domain Phyre2 PDB 2fiy chain A domain 1 Region: 3 - 39 Aligned: 31 Modelled: 37 Confidence: 77.6% Identity: 39% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 3cc4 chain Z Region: 3 - 39 Aligned: 27 Modelled: 37 Confidence: 75.8% Identity: 33% PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit Phyre2 PDB 1dgs chain B Region: 3 - 35 Aligned: 23 Modelled: 23 Confidence: 75.0% Identity: 35% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis Phyre2 PDB 1ysh chain D Region: 4 - 39 Aligned: 26 Modelled: 36 Confidence: 74.3% Identity: 27% PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e Phyre2 PDB 2zkr chain Z Region: 4 - 39 Aligned: 26 Modelled: 36 Confidence: 74.0% Identity: 27% PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1vqo chain Z domain 1 Region: 4 - 39 Aligned: 26 Modelled: 36 Confidence: 73.7% Identity: 35% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L37ae Phyre2 PDB 2ctd chain A domain 2 Region: 1 - 8 Aligned: 8 Modelled: 8 Confidence: 72.5% Identity: 50% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 2qa4 chain Z Region: 4 - 39 Aligned: 26 Modelled: 36 Confidence: 72.3% Identity: 35% PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit Phyre2 PDB 1jj2 chain Y Region: 4 - 39 Aligned: 26 Modelled: 36 Confidence: 71.2% Identity: 27% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L37ae Phyre2 PDB 2jr6 chain A Region: 1 - 70 Aligned: 60 Modelled: 60 Confidence: 61.0% Identity: 3% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 Phyre2 1 d1tfia_ 2 d1twfi2 3 d1qypa_ 4 c1pqvS_ 5 c1y1yS_ 6 c1i3qI_ 7 c3h0gI_ 8 c2hu9B_ 9 d1dgsa1 10 c4a17Y_ 11 d1wiia_ 12 d2fiya1 13 c3cc4Z_ 14 c1dgsB_ 15 c1yshD_ 16 c2zkrz_ 17 d1vqoz1 18 d2ctda2 19 c2qa4Z_ 20 d1jj2y_ 21 22 23 24 25 c2jr6A_ 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tfia_ 96.0 18 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 2 d1twfi2 95.7 24 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 3 d1qypa_ 95.6 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 4 c1pqvS_ 94.4 15 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 5 c1y1yS_ 93.7 15 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 6 c1i3qI_ 93.4 24 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 7 c3h0gI_ 93.2 22 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 8 c2hu9B_ 92.0 16 PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain 9 d1dgsa1 87.8 35 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 10 c4a17Y_ 79.6 30 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 11 d1wiia_ 79.0 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 12 d2fiya1 77.6 39 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 13 c3cc4Z_ 75.8 33 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 14 c1dgsB_ 75.0 35 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 15 c1yshD_ 74.3 27 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 16 c2zkrz_ 74.0 27 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 17 d1vqoz1 73.7 35 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 18 d2ctda2 72.5 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 19 c2qa4Z_ 72.3 35 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 20 d1jj2y_ 71.2 27 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 21 d1ffkw_ not modelled 71.0 31 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 22 c3cngC_ not modelled 70.7 29 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 23 c3gn5B_ not modelled 64.3 25 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 24 c2kpiA_ not modelled 63.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 25 c2jr6A_ 61.0 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 26 c3ndjA_ not modelled 59.7 15 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 27 c2f9iD_ not modelled 59.5 28 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 28 c1v9pB_ not modelled 59.3 35 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 29 c2owoA_ not modelled 59.2 28 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 30 c1x31D_ not modelled 58.6 30 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 31 c2js4A_ not modelled 58.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 32 c1s1i9_ not modelled 57.9 27 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 33 c2qkdA_ not modelled 57.9 24 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 34 d2jnya1 not modelled 55.4 14 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 35 d1p91a_ not modelled 50.3 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 36 c3jyw9_ not modelled 46.7 27 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 37 c2k5cA_ not modelled 45.8 36 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 38 c3a44D_ not modelled 44.2 38 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 39 d2fu5a1 not modelled 41.0 17 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 40 c2gajA_ not modelled 40.1 27 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form 41 d1hxra_ not modelled 39.9 17 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 42 c2gb5B_ not modelled 38.8 19 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 43 d1dl6a_ not modelled 38.6 25 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 44 d2cona1 not modelled 38.5 22 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 45 c2f9yB_ not modelled 37.3 20 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 46 d2f9yb1 not modelled 37.3 20 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 47 c2kdxA_ not modelled 34.4 11 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 48 c1dvbA_ not modelled 32.7 24 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 49 c2adrA_ not modelled 31.1 25 PDB header:transcription regulation Chain: A: PDB Molecule:adr1; PDBTitle: adr1 dna-binding domain from saccharomyces cerevisiae, nmr,2 25 structures 50 d2pk7a1 not modelled 30.9 14 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 51 d2hf1a1 not modelled 29.5 31 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 52 c3k7aM_ not modelled 29.1 33 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 53 c1llmC_ not modelled 28.2 16 PDB header:transcription/dna Chain: C: PDB Molecule:chimera of zif23-gcn4; PDBTitle: crystal structure of a zif23-gcn4 chimera bound to dna 54 c2ghfA_ not modelled 28.1 14 PDB header:transcription, metal binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1; PDBTitle: solution structure of the complete zinc-finger region of2 human zinc-fingers and homeoboxes 1 (zhx1) 55 c2cotA_ not modelled 27.6 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 435; PDBTitle: solution structure of the first and second zf-c2h2 domain2 of zinc finger protein 435 56 d1wj2a_ not modelled 26.6 21 Fold:WRKY DNA-binding domain Superfamily:WRKY DNA-binding domain Family:WRKY DNA-binding domain 57 c1wjvA_ not modelled 26.3 17 PDB header:dna binding protein Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar; PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar 58 d1pfva3 not modelled 26.0 30 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 59 c2d9kA_ not modelled 25.9 21 PDB header:immune system Chain: A: PDB Molecule:fln29 gene product; PDBTitle: solution structure of the zf-traf domain of fln29 gene2 product 60 c1x5wA_ not modelled 25.2 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 64, isoforms 1; PDBTitle: solution structure of the c2h2 type zinc-binding domain of2 human zinc finger protein 64, isoforms 1 and 2 61 d2ct1a1 not modelled 25.0 71 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 62 d2dlqa2 not modelled 24.7 57 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 63 c2ct1A_ not modelled 24.6 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor ctcf; PDBTitle: solution structure of the zinc finger domain of2 transcriptional repressor ctcf protein 64 c2hr5B_ not modelled 24.3 25 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 65 d1pvma3 not modelled 23.3 21 Fold:Rubredoxin-like Superfamily:Hypothetical protein Ta0289 C-terminal domain Family:Hypothetical protein Ta0289 C-terminal domain 66 c2yreA_ not modelled 22.0 17 PDB header:protein binding Chain: A: PDB Molecule:f-box only protein 30; PDBTitle: solution structure of the zinc finger domains (1-87) from2 human f-box only protein 67 c1x6eA_ not modelled 21.7 13 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger protein 24; PDBTitle: solution structures of the c2h2 type zinc finger domain of2 human zinc finger protein 24 68 d1nuia2 not modelled 21.6 22 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 69 d1twfi1 not modelled 21.6 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 70 c2aydA_ not modelled 21.2 21 PDB header:transcription Chain: A: PDB Molecule:wrky transcription factor 1; PDBTitle: crystal structure of the c-terminal wrky domainof atwrky1,2 an sa-induced and partially npr1-dependent transcription3 factor 71 d1pfta_ not modelled 20.2 40 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 72 d2ey4e1 not modelled 19.9 16 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 73 c1yuzB_ not modelled 19.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 74 c3hctA_ not modelled 19.1 13 PDB header:signaling protein/ligase Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: crystal structure of traf6 in complex with ubc13 in the p12 space group 75 c2ja6L_ not modelled 18.4 30 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 76 c1wjpA_ not modelled 18.4 19 PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein 295; PDBTitle: solution structure of zf-c2h2 domains from human zinc2 finger protein 295 77 d1aaya1 not modelled 17.9 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 78 c2wbtA_ not modelled 16.4 28 PDB header:dna-binding protein Chain: A: PDB Molecule:b-129; PDBTitle: the structure of a double c2h2 zinc finger protein from a2 hyperthermophilic archaeal virus in the absence of dna 79 d2apob1 not modelled 15.5 16 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 80 d6rxna_ not modelled 15.2 33 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 81 d1a1ia1 not modelled 15.1 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 82 d2qam01 not modelled 15.0 0 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 83 c3htkC_ not modelled 15.0 22 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 84 c2yu4A_ not modelled 14.9 33 PDB header:apoptosis Chain: A: PDB Molecule:e3 sumo-protein ligase nse2; PDBTitle: solution structure of the sp-ring domain in non-smc element2 2 homolog (mms21, s. cerevisiae) 85 d1a1ha1 not modelled 14.8 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 86 c1nltA_ not modelled 14.3 15 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 87 c3lpeF_ not modelled 14.3 25 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 88 c2d9hA_ not modelled 14.1 17 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger protein 692; PDBTitle: solution structure of the forth and fifth zf-c2h2 domains2 of zinc finger protein 692 89 d1f2ig1 not modelled 14.0 27 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 90 d1lv3a_ not modelled 13.9 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 91 c3h0gL_ not modelled 13.3 33 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 92 c3iz5p_ not modelled 13.3 23 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l15 (l15e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 93 d2j0151 not modelled 12.9 33 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 94 d1nnqa2 not modelled 12.6 21 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 95 d2zjrz1 not modelled 12.5 30 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 96 d1a1ga1 not modelled 12.4 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 97 c2bx9J_ not modelled 12.2 27 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 98 d1yuza2 not modelled 12.1 38 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 99 c3alrA_ not modelled 12.1 50 PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0