Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	S	L	D	P	L	F	A	R	L	S	R	S	K	F	R	S	R	F	R	L	G	M	K	E	R	Q	Y	C	L	E	K	G	A	P	V	I	E	Q	H	A	A	D	F	V	A	K	R	L	A	P	A	L	P	A	N	D	G	K
Secondary structure
SS confidence
Disorder		?	?	?										?						?	?	?																														?	?	?	?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Sequence		Q	T	P	M	R	G	H	P	V	F	I	A	Q	H	A	T	A	T	C	C	R	G	C	L	A	K	W	H	N	I	P	Q	G	V	S	L	S	E	E	Q	Q	R	Y	I	V	A	V	I	Y	H	W	L	V	V	Q	M	N	Q	P
Secondary structure
SS confidence
Disorder		?																															?		?	?	?																				?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fyb chain A Region: 80 - 105 Aligned: 26 Modelled: 26 Confidence: 80.6% Identity: 50% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis Phyre2 PDB 2o35 chain A Region: 80 - 105 Aligned: 26 Modelled: 26 Confidence: 78.4% Identity: 46% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf1244; PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti Phyre2 PDB 2o35 chain A domain 1 Region: 80 - 105 Aligned: 26 Modelled: 26 Confidence: 78.4% Identity: 46% Fold: SMc04008-like Superfamily: SMc04008-like Family: SMc04008-like Phyre2 PDB 2oge chain C Region: 90 - 114 Aligned: 25 Modelled: 25 Confidence: 48.0% Identity: 20% PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form Phyre2 PDB 3uwc chain A Region: 90 - 115 Aligned: 26 Modelled: 26 Confidence: 46.8% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp Phyre2 PDB 3frk chain B Region: 90 - 111 Aligned: 22 Modelled: 22 Confidence: 44.7% Identity: 27% PDB header:transferase Chain: B: PDB Molecule:qdtb; PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine Phyre2 PDB 3htk chain C Region: 61 - 87 Aligned: 23 Modelled: 27 Confidence: 35.8% Identity: 17% PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex Phyre2 PDB 1o69 chain A Region: 90 - 113 Aligned: 24 Modelled: 24 Confidence: 34.9% Identity: 21% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 3bcx chain A Region: 90 - 114 Aligned: 25 Modelled: 25 Confidence: 34.3% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase Phyre2 PDB 1wpb chain A Region: 81 - 106 Aligned: 26 Modelled: 26 Confidence: 33.9% Identity: 27% Fold: YfbU-like Superfamily: YfbU-like Family: YfbU-like Phyre2 PDB 3nys chain A Region: 85 - 108 Aligned: 24 Modelled: 24 Confidence: 26.8% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution Phyre2 PDB 1hj3 chain A domain 1 Region: 89 - 109 Aligned: 21 Modelled: 21 Confidence: 26.5% Identity: 29% Fold: Cytochrome c Superfamily: Cytochrome c Family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase Phyre2 PDB 2po3 chain B Region: 90 - 114 Aligned: 25 Modelled: 25 Confidence: 25.9% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product Phyre2 PDB 2k6v chain A Region: 64 - 85 Aligned: 22 Modelled: 22 Confidence: 25.8% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:putative cytochrome c oxidase assembly protein; PDBTitle: solution structures of apo sco1 protein from thermus2 thermophilus Phyre2 PDB 3ju7 chain B Region: 90 - 108 Aligned: 19 Modelled: 19 Confidence: 24.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution Phyre2 PDB 2fnu chain A domain 1 Region: 90 - 113 Aligned: 24 Modelled: 24 Confidence: 22.5% Identity: 17% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 2rli chain A Region: 64 - 86 Aligned: 23 Modelled: 23 Confidence: 22.4% Identity: 30% PDB header:metal transport Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; PDBTitle: solution structure of cu(i) human sco2 Phyre2 PDB 2kvc chain A Region: 93 - 110 Aligned: 18 Modelled: 18 Confidence: 22.1% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a Phyre2 PDB 2r0t chain A Region: 90 - 108 Aligned: 19 Modelled: 19 Confidence: 20.5% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Phyre2 PDB 1jiw chain P Region: 59 - 111 Aligned: 52 Modelled: 53 Confidence: 20.5% Identity: 35% PDB header:hydrolase/hyrolase inhibitor Chain: P: PDB Molecule:alkaline metalloproteinase; PDBTitle: crystal structure of the apr-aprin complex Phyre2 1 c3fybA_ 2 c2o35A_ 3 d2o35a1 4 c2ogeC_ 5 c3uwcA_ 6 c3frkB_ 7 c3htkC_ 8 d1o69a_ 9 c3bcxA_ 10 d1wpba_ 11 c3nysA_ 12 d1hj3a1 13 c2po3B_ 14 c2k6vA_ 15 c3ju7B_ 16 d2fnua1 17 c2rliA_ 18 c2kvcA_ 19 c2r0tA_ 20 c1jiwP_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3fybA_ 80.6 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis 2 c2o35A_ 78.4 46 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf1244; PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti 3 d2o35a1 78.4 46 Fold:SMc04008-like Superfamily:SMc04008-like Family:SMc04008-like 4 c2ogeC_ 48.0 20 PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form 5 c3uwcA_ 46.8 23 PDB header:transferase Chain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp 6 c3frkB_ 44.7 27 PDB header:transferase Chain: B: PDB Molecule:qdtb; PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine 7 c3htkC_ 35.8 17 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 8 d1o69a_ 34.9 21 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 9 c3bcxA_ 34.3 16 PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase 10 d1wpba_ 33.9 27 Fold:YfbU-like Superfamily:YfbU-like Family:YfbU-like 11 c3nysA_ 26.8 17 PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution 12 d1hj3a1 26.5 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 13 c2po3B_ 25.9 12 PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product 14 c2k6vA_ 25.8 18 PDB header:electron transport Chain: A: PDB Molecule:putative cytochrome c oxidase assembly protein; PDBTitle: solution structures of apo sco1 protein from thermus2 thermophilus 15 c3ju7B_ 24.0 21 PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution 16 d2fnua1 22.5 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 17 c2rliA_ 22.4 30 PDB header:metal transport Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; PDBTitle: solution structure of cu(i) human sco2 18 c2kvcA_ 22.1 11 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 19 c2r0tA_ 20.5 11 PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine 20 c1jiwP_ 20.5 35 PDB header:hydrolase/hyrolase inhibitor Chain: P: PDB Molecule:alkaline metalloproteinase; PDBTitle: crystal structure of the apr-aprin complex 21 c3gxqB_ not modelled 18.0 25 PDB header:dna binding protein/dna Chain: B: PDB Molecule:putative regulator of transfer genes arta; PDBTitle: structure of arta and dna complex 22 d1riea_ not modelled 18.0 25 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 23 c2kreA_ not modelled 17.2 25 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; PDBTitle: solution structure of e4b/ufd2a u-box domain 24 c2nvgA_ not modelled 16.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit; PDBTitle: soluble domain of rieske iron sulfur protein. 25 c2k0mA_ not modelled 14.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43 26 d1wgma_ not modelled 14.6 24 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 27 c2b7kD_ not modelled 14.3 22 PDB header:metal binding protein Chain: D: PDB Molecule:sco1 protein; PDBTitle: crystal structure of yeast sco1 28 d2k4xa1 not modelled 14.2 61 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 29 c1vsy7_ not modelled 13.0 13 PDB header:hydrolase Chain: 7: PDB Molecule:proteasome activator blm10; PDBTitle: proteasome activator complex 30 c2lkyA_ not modelled 12.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b 31 d1khda1 not modelled 12.3 22 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 32 c2zxyA_ not modelled 12.1 15 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 33 c2f42A_ not modelled 12.0 20 PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein 34 c2juhA_ not modelled 11.7 17 PDB header:nuclear protein Chain: A: PDB Molecule:telomere binding protein tbp1; PDBTitle: solution structure of dna binding domain of ngtrf1 35 c3n92A_ not modelled 11.5 30 PDB header:transferase Chain: A: PDB Molecule:alpha-amylase, gh57 family; PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose 36 c2ecyA_ not modelled 11.4 38 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor-associated factor 3; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3 37 d1h8ba_ not modelled 11.2 23 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 38 c2i6hA_ not modelled 11.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0120; PDBTitle: structure of protein of unknown function atu0120 from agrobacterium2 tumefaciens 39 d2i6ha1 not modelled 11.1 18 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Atu0120-like 40 c2d8tA_ not modelled 10.7 20 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 146; PDBTitle: solution structure of the ring domain of the human ring2 finger protein 146 41 c3jqoH_ not modelled 10.6 11 PDB header:transport protein Chain: H: PDB Molecule:trao protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system 42 c2ofqA_ not modelled 10.6 11 PDB header:protein transport/protein transport Chain: A: PDB Molecule:trao; PDBTitle: nmr solution structure of a complex between the virb9/virb72 interaction domains of the pkm101 type iv secretion system 43 c3ol4B_ not modelled 10.3 24 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 44 d1w0ba_ not modelled 10.2 19 Fold:Spectrin repeat-like Superfamily:Alpha-hemoglobin stabilizing protein AHSP Family:Alpha-hemoglobin stabilizing protein AHSP 45 d2e7ja1 not modelled 10.2 21 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like 46 c2cklA_ not modelled 10.1 20 PDB header:transcription Chain: A: PDB Molecule:polycomb group ring finger protein 4; PDBTitle: ring1b-bmi1 e3 catalytic domain structure 47 d1wp0a1 not modelled 10.0 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 48 d2c2vv1 not modelled 9.9 18 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 49 c3fl2A_ not modelled 9.8 30 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1 50 d1z8ua1 not modelled 9.8 19 Fold:Spectrin repeat-like Superfamily:Alpha-hemoglobin stabilizing protein AHSP Family:Alpha-hemoglobin stabilizing protein AHSP 51 c2cklB_ not modelled 9.8 17 PDB header:transcription Chain: B: PDB Molecule:ubiquitin ligase protein ring2; PDBTitle: ring1b-bmi1 e3 catalytic domain structure 52 c2ecnA_ not modelled 9.7 50 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 141; PDBTitle: solution structure of the ring domain of the human ring2 finger protein 141 53 d1rmda2 not modelled 9.5 38 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 54 d1a56a_ not modelled 9.5 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 55 d1t1ha_ not modelled 9.5 38 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 56 c3dr4B_ not modelled 9.5 22 PDB header:transferase Chain: B: PDB Molecule:putative perosamine synthetase; PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand 57 c2djbA_ not modelled 9.4 30 PDB header:gene regulation Chain: A: PDB Molecule:polycomb group ring finger protein 6; PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6 58 c2kveA_ not modelled 9.4 57 PDB header:hormone Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor; PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf) 59 c3bijC_ not modelled 9.4 38 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein gsu0716; PDBTitle: crystal structure of protein gsu0716 from geobacter2 sulfurreducens. northeast structural genomics target gsr13 60 c2ecwA_ not modelled 9.3 30 PDB header:apoptosis Chain: A: PDB Molecule:tripartite motif-containing protein 30; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain tripartite motif protein 30 61 c2eciA_ not modelled 9.2 30 PDB header:metal binding protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein 62 d2tpta1 not modelled 9.1 33 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 63 d1ur6b_ not modelled 8.8 38 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 64 d3cx5e1 not modelled 8.6 35 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 65 c2ecjA_ not modelled 8.6 18 PDB header:metal binding protein Chain: A: PDB Molecule:tripartite motif-containing protein 39; PDBTitle: solution structure of the ring domain of the human2 tripartite motif-containing protein 39 66 c2w9vA_ not modelled 8.5 63 PDB header:toxin Chain: A: PDB Molecule:short disintegrin jerdostatin; PDBTitle: solution structure of jerdostatin from trimeresurus2 jerdonii with end c-terminal residues n45g46 deleted 67 c2y43B_ not modelled 8.2 30 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18; PDBTitle: rad18 ubiquitin ligase ring domain structure 68 c4a5bA_ not modelled 8.1 19 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside-triphosphatase 2; PDBTitle: crystal structure of the c258s/c268s variant of toxoplasma gondii2 nucleoside triphosphate diphosphohydrolase 1 (ntpdase1) 69 d1jm7a_ not modelled 8.0 38 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 70 d2elca1 not modelled 7.9 24 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 71 d2b7ka1 not modelled 7.8 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 72 c3ztgA_ not modelled 7.7 20 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rbbp6; PDBTitle: solution structure of the ring finger-like domain of2 retinoblastoma binding protein-6 (rbbp6) 73 c2y3aB_ not modelled 7.7 28 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta; PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941 74 d1uoua1 not modelled 7.6 37 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 75 c3l11A_ not modelled 7.5 25 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf168; PDBTitle: crystal structure of the ring domain of rnf168 76 d1ng7a_ not modelled 7.4 56 Fold:Soluble domain of poliovirus core protein 3a Superfamily:Soluble domain of poliovirus core protein 3a Family:Soluble domain of poliovirus core protein 3a 77 d2cwqa1 not modelled 7.3 19 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 78 c2h0dB_ not modelled 7.2 25 PDB header:metal binding protein/ligase Chain: B: PDB Molecule:ubiquitin ligase protein ring2; PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex 79 c3sqgG_ not modelled 7.2 50 PDB header:transferase Chain: G: PDB Molecule:methyl coenzyme m reductase, alpha subunit; PDBTitle: crystal structure of a methyl-coenzyme m reductase purified from black2 sea mats 80 d1k78a1 not modelled 7.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 81 c2yu4A_ not modelled 7.1 0 PDB header:apoptosis Chain: A: PDB Molecule:e3 sumo-protein ligase nse2; PDBTitle: solution structure of the sp-ring domain in non-smc element2 2 homolog (mms21, s. cerevisiae) 82 d1v8ga1 not modelled 6.9 24 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 83 c2csyA_ not modelled 6.8 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:zinc finger protein 183-like 1; PDBTitle: solution structure of the ring domain of the zinc finger2 protein 183-like 1 84 c1tr6A_ not modelled 6.7 80 PDB header:toxin Chain: A: PDB Molecule:omega-conotoxin gvia; PDBTitle: nmr solution structure of omega-conotoxin [k10]gvia, a cyclic cysteine2 knot peptide 85 c1omcA_ not modelled 6.7 80 PDB header:presynaptic neurotoxin Chain: A: PDB Molecule:omega-conotoxin gvia; PDBTitle: solution structure of omega-conotoxin gvia using 2-d nmr2 spectroscopy and relaxation matrix analysis 86 c2ccoA_ not modelled 6.7 80 PDB header:toxin Chain: A: PDB Molecule:omega-conotoxin gvia; PDBTitle: structure of the calcium channel blocker omega conotoxin2 gvia, nmr, 20 structures 87 d1omca_ not modelled 6.7 80 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Conotoxin 88 c1ttlA_ not modelled 6.7 80 PDB header:toxin Chain: A: PDB Molecule:omega-conotoxin gvia; PDBTitle: omega-conotoxin gvia, a n-type calcium channel blocker 89 c3tqcB_ not modelled 6.7 26 PDB header:transferase Chain: B: PDB Molecule:pantothenate kinase; PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii 90 d1vyxa_ not modelled 6.6 50 Fold:RING/U-box Superfamily:RING/U-box Family:Variant RING domain 91 d1st9a_ not modelled 6.6 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 92 c3knvA_ not modelled 6.5 50 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of the ring and first zinc finger domains2 of traf2 93 d1c75a_ not modelled 6.4 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 94 d2b5xa1 not modelled 6.4 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 95 c1nhgD_ not modelled 6.3 10 PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: crystal structure analysis of plasmodium falciparum enoyl-2 acyl-carrier-protein reductase with triclosan 96 c3f6oB_ not modelled 6.3 12 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 97 c2oixA_ not modelled 6.3 36 PDB header:hydrolase Chain: A: PDB Molecule:xanthomonas outer protein d; PDBTitle: xanthomonas xopd c470a mutant 98 d1gp1a_ not modelled 6.2 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 99 c3jvbA_ not modelled 6.2 83 PDB header:viral protein Chain: A: PDB Molecule:polyhedrin; PDBTitle: crystal structure of infectious baculovirus polyhedra

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0