Email l.a.kelley@imperial.ac.uk Description P77147 Date Thu Jan 5 12:25:38 GMT 2012 Unique Job ID a3d03d3d8bd08349

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ygvA_ 99.2 13 PDB header:structural protein/contractile protein Chain: A: PDB Molecule:collagen i alpha 1; PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment 2 c1y0fB_ 98.8 13 PDB header:structural protein/contractile protein Chain: B: PDB Molecule:collagen i alpha 2; PDBTitle: the structure of collagen type i. single type i collagen2 molecule 3 c2qubG_ 97.7 13 PDB header:hydrolase Chain: G: PDB Molecule:extracellular lipase; PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens 4 c2zj6A_ 97.7 13 PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase 5 c1satA_ 97.0 16 PDB header:hydrolase (serine protease) Chain: A: PDB Molecule:serratia protease; PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens 6 c3bogB_ 96.6 13 PDB header:antifreeze protein Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate 7 c3bogA_ 96.6 13 PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate 8 c2pneA_ 96.5 14 PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: crystal structure of the snow flea antifreeze protein 9 c3boiB_ 96.5 14 PDB header:antifreeze protein Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein racemate 10 c3boiA_ 96.5 14 PDB header:antifreeze protein Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein racemate 11 d1kapp1 95.5 14 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 12 c1k7qA_ 95.0 11 PDB header:hydrolase Chain: A: PDB Molecule:secreted protease c; PDBTitle: prtc from erwinia chrysanthemi: e189a mutant 13 d1g9ka1 94.6 16 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 14 d1sata1 94.3 12 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 15 c2agmA_ 93.6 11 PDB header:isomerase Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: solution structure of the r-module from alge4 16 d1k7ia1 93.0 12 Fold:Single-stranded right-handed beta-helix Superfamily:beta-Roll Family:Serralysin-like metalloprotease, C-terminal domain 17 c1om8A_ 92.3 12 PDB header:hydrolase Chain: A: PDB Molecule:serralysin; PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta 18 c1nayC_ 92.1 8 PDB header:structural protein Chain: C: PDB Molecule:collagen-like peptide; PDBTitle: gpp-foldon:x-ray structure 19 c1jiwP_ 91.8 20 PDB header:hydrolase/hyrolase inhibitor Chain: P: PDB Molecule:alkaline metalloproteinase; PDBTitle: crystal structure of the apr-aprin complex 20 c3p4gD_ 62.9 14 PDB header:antifreeze protein Chain: D: PDB Molecule:antifreeze protein; PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium 21 d1ic8a2 62.9 38 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain 22 c1ezyA_ not modelled 41.5 11 PDB header:signaling protein inhibitor Chain: A: PDB Molecule:regulator of g-protein signaling 4; PDBTitle: high-resolution solution structure of free rgs4 by nmr 23 c2wauA_ not modelled 39.2 30 PDB header:membrane protein Chain: A: PDB Molecule:erythrocyte membrane protein 1 (pfemp1); PDBTitle: structure of dbl6 epsilon domain from var2csa 24 d1zroa2 not modelled 37.6 30 Fold:Duffy binding domain-like Superfamily:Duffy binding domain-like Family:Duffy binding domain 25 d1h8ba_ not modelled 36.3 16 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 26 d1a9xa1 not modelled 34.7 20 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 27 c2c6jA_ not modelled 30.8 30 PDB header:receptor Chain: A: PDB Molecule:duffy receptor, alpha form; PDBTitle: structure of p. knowlesi dbl domain capable of binding2 human duffy antigen 28 d2c6ja1 not modelled 30.8 30 Fold:Duffy binding domain-like Superfamily:Duffy binding domain-like Family:Duffy binding domain 29 c2xu0A_ not modelled 30.5 30 PDB header:membrane protein Chain: A: PDB Molecule:erythrocyte membrane protein 1; PDBTitle: crystal structure of the nts-dbl1(alpha-1) domain of the plasmodium2 falciparum membrane protein 1 (pfemp1) from the varo strain. 30 c3cpzA_ not modelled 29.8 20 PDB header:membrane protein Chain: A: PDB Molecule:erythrocyte membrane protein 1; PDBTitle: crystal structure of var2csa dbl3x domain in the presence of2 dodecasaccharide of csa 31 d1zroa1 not modelled 26.9 10 Fold:Duffy binding domain-like Superfamily:Duffy binding domain-like Family:Duffy binding domain 32 c1e17A_ not modelled 23.9 36 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 33 c1kzzA_ not modelled 19.9 24 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 34 c2rngA_ not modelled 19.8 7 PDB header:antimicrobial protein Chain: A: PDB Molecule:big defensin; PDBTitle: solution structure of big defensin 35 d3bpya1 not modelled 19.8 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 36 d1kq8a_ not modelled 19.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 37 c1kq8A_ not modelled 19.6 25 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1; PDBTitle: solution structure of winged helix protein hfh-1 38 c3g73A_ not modelled 19.1 42 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 39 d1czya1 not modelled 18.4 25 Fold:TRAF domain-like Superfamily:TRAF domain-like Family:MATH domain 40 c3chxG_ not modelled 17.4 24 PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 41 d1l0aa1 not modelled 17.1 25 Fold:TRAF domain-like Superfamily:TRAF domain-like Family:MATH domain 42 c1ca9D_ not modelled 16.5 25 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 43 d1d5va_ not modelled 16.4 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 44 d1lb6a_ not modelled 15.8 19 Fold:TRAF domain-like Superfamily:TRAF domain-like Family:MATH domain 45 d2prva1 not modelled 15.8 36 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 46 c1zroB_ not modelled 15.7 10 PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose 47 d2icga1 not modelled 14.9 27 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 48 d1n1xa_ not modelled 14.8 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 49 c3i7fA_ not modelled 14.6 20 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 50 c1fllA_ not modelled 14.6 25 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: molecular basis for cd40 signaling mediated by traf3 51 c2jrrA_ not modelled 14.2 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90 52 c3nuhB_ not modelled 13.9 31 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function 53 c3co7C_ not modelled 13.6 25 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 54 d1b6va_ not modelled 13.0 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 55 c2hkyA_ not modelled 12.9 29 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease 7; PDBTitle: nmr solution structure of human rnase 7 56 d2c6ya1 not modelled 12.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 57 d2a07f1 not modelled 12.7 45 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 58 d1srna_ not modelled 12.7 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 59 d1lq9a_ not modelled 12.4 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Actinorhodin biosynthesis monooxygenase ActVa-Orf6 60 d1gqva_ not modelled 11.2 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 61 c1ceuA_ not modelled 11.1 35 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 62 c2kz6A_ not modelled 11.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2 63 d1h8xa_ not modelled 10.8 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 64 d2hfha_ not modelled 10.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 65 c3fofD_ not modelled 10.5 27 PDB header:isomerase/dna Chain: D: PDB Molecule:dna topoisomerase 4 subunit b; PDBTitle: structural insight into the quinolone-dna cleavage complex2 of type iia topoisomerases 66 d1e7ua4 not modelled 10.4 16 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Phoshoinositide 3-kinase (PI3K), catalytic domain 67 d1id3c_ not modelled 10.3 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 68 d1agre_ not modelled 10.1 11 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 69 c1agrE_ not modelled 10.1 11 PDB header:complex (signal transduction/regulator) Chain: E: PDB Molecule:rgs4; PDBTitle: complex of alf4-activated gi-alpha-1 with rgs4 70 d1rraa_ not modelled 10.0 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 71 c2z9fC_ not modelled 9.9 12 PDB header:biosynthetic protein Chain: C: PDB Molecule:cellulose synthase operon protein d; PDBTitle: crystal structure of axcesd protein from acetobacter xylinum 72 c1iojA_ not modelled 9.9 26 PDB header:apolipoprotein Chain: A: PDB Molecule:apoc-i; PDBTitle: human apolipoprotein c-i, nmr, 18 structures 73 d1f7ca_ not modelled 9.9 13 Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain) 74 c1f7cA_ not modelled 9.9 13 PDB header:signaling protein Chain: A: PDB Molecule:rhogap protein; PDBTitle: crystal structure of the bh domain from graf, the gtpase2 regulator associated with focal adhesion kinase 75 d1tzya_ not modelled 9.7 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 76 c3hwpA_ not modelled 9.4 20 PDB header:hydrolase Chain: A: PDB Molecule:phlg; PDBTitle: crystal structure and computational analyses provide insights into the2 catalytic mechanism of 2, 4-diacetylphloroglucinol hydrolase phlg3 from pseudomonas fluorescens 77 c3fbyC_ not modelled 9.4 53 PDB header:cell adhesion Chain: C: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein. 78 c2zjtB_ not modelled 9.3 15 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: crystal structure of dna gyrase b' domain sheds lights on2 the mechanism for t-segment navigation 79 c3ifuA_ not modelled 9.2 21 PDB header:transcription Chain: A: PDB Molecule:non-structural protein; PDBTitle: the crystal structure of porcine reproductive and2 respiratory syndrome virus (prrsv) leader protease nsp1 80 d1j77a_ not modelled 9.1 16 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:Heme oxygenase HemO (PigA) 81 c3qwlA_ not modelled 9.0 32 PDB header:hydrolase activator Chain: A: PDB Molecule:tbc1 domain family member 7; PDBTitle: crystal structure of human tbc1 domain family member 7 82 d1u35c1 not modelled 9.0 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 83 c2kn6A_ not modelled 8.8 23 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card; PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card) 84 c2oq2B_ not modelled 8.7 30 PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex 85 d1dy5a_ not modelled 8.4 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 86 c3fqdA_ not modelled 8.4 23 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:5'-3' exoribonuclease 2; PDBTitle: crystal structure of the s. pombe rat1-rai1 complex 87 c3bwvB_ not modelled 8.3 27 PDB header:hydrolase Chain: B: PDB Molecule:putative 5'(3')-deoxyribonucleotidase; PDBTitle: crystal structure of deoxyribonucleotidase-like protein (np_764060.1)2 from staphylococcus epidermidis atcc 12228 at 1.55 a resolution 88 c3id6A_ not modelled 8.2 67 PDB header:transferase Chain: A: PDB Molecule:pre mrna splicing protein; PDBTitle: crystal structure of sulfolobus solfataricus nop5 (1-262) and2 fibrillarin complex 89 c2zpoA_ not modelled 8.1 57 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: crystal structure of green turtle egg white ribonuclease 90 d1pbwa_ not modelled 7.9 17 Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain) 91 d1kx3c_ not modelled 7.8 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 92 d1juqa_ not modelled 7.7 23 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 93 d1fx0b2 not modelled 7.5 40 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 94 d1ucpa_ not modelled 7.4 23 Fold:DEATH domain Superfamily:DEATH domain Family:Pyrin domain, PYD 95 d1ztda1 not modelled 7.4 46 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like 96 d1dyta_ not modelled 7.4 29 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 97 c1yo8A_ not modelled 7.3 47 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-2; PDBTitle: structure of the c-terminal domain of human thrombospondin-2 98 c1f66C_ not modelled 7.3 30 PDB header:structural protein/dna Chain: C: PDB Molecule:histone h2a.z; PDBTitle: 2.6 a crystal structure of a nucleosome core particle2 containing the variant histone h2a.z 99 d1f66c_ not modelled 7.3 30 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones