Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	P	E	I	G	N	G	L	L	C	L	A	L	G	I	A	L	L	L	S	V	Y	P	L	W	G	V	A	R	G	D	A	R	M	M	A	S	S	R	L	F	A	W	L	L	F	M	S	V	A	G	A	F	L	V	L	V	N	A
Secondary structure
SS confidence
Disorder		?	?	?	?																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	V	V	N	D	F	T	V	T	Y	V	A	S	N	S	N	T	Q	L	P	V	W	Y	R	V	A	A	T	W	G	A	H	E	G	S	L	L	L	W	V	L	L	M	S	G	W	T	F	A	V	A	I	F	S	Q	R	I	P	L	D
Secondary structure
SS confidence
Disorder																																																								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	V	A	R	V	L	A	I	M	G	M	V	S	V	G	F	L	L	F	I	L	F	T	S	N	P	F	S	R	T	L	P	N	F	P	I	E	G	R	D	L	N	P	L	L	Q	D	P	G	L	I	F	H	P	P	L	L	Y	M	G
Secondary structure
SS confidence
Disorder																														?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	V	G	F	S	V	A	F	A	F	A	I	A	S	L	L	S	G	R	L	D	S	T	Y	A	R	F	T	R	P	W	T	L	A	A	W	I	F	L	T	L	G	I	V	L	G	S	A	W	A	Y	Y	E	L	G	W	G	G	W	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	W	D	P	V	E	N	A	S	F	M	P	W	L	V	G	T	A	L	M	H	S	L	A	V	T	E	Q	R	A	S	F	K	A	W	T	L	L	L	A	I	S	A	F	S	L	C	L	L	G	T	F	L	V	R	S	G	V	L	V
Secondary structure
SS confidence
Disorder																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	V	H	A	F	A	S	D	P	A	R	G	M	F	I	L	A	F	M	V	L	V	I	G	G	S	L	L	L	F	A	A	R	G	H	K	V	R	S	R	V	N	N	A	L	W	S	R	E	S	L	L	L	A	N	N	V	L	L	V
Secondary structure
SS confidence
Disorder																																		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	A	M	L	V	V	L	L	G	T	L	L	P	L	V	H	K	Q	L	G	L	G	S	I	S	I	G	E	P	F	F	N	T	M	F	T	W	L	M	V	P	F	A	L	L	L	G	V	G	P	L	V	R	W	G	R	D	R	P	R
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?	?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		K	I	R	N	L	L	I	I	A	F	I	S	T	L	V	L	S	L	L	L	P	W	L	F	E	S	K	V	V	A	M	T	V	L	G	L	A	M	A	C	W	I	A	V	L	A	I	A	E	A	A	L	R	I	S	R	G	T	K	T
Secondary structure
SS confidence
Disorder																													?																											?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		T	F	S	Y	W	G	M	V	A	A	H	L	G	L	A	V	T	I	V	G	I	A	F	S	Q	N	Y	S	V	E	R	D	V	R	M	K	S	G	D	S	V	D	I	H	E	Y	R	F	T	F	R	D	V	K	E	V	T	G	P	N
Secondary structure
SS confidence
Disorder		?																							?	?		?	?		?	?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		W	R	G	G	V	A	T	I	G	V	T	R	D	G	K	P	E	T	V	L	Y	A	E	K	R	Y	Y	N	T	A	G	S	M	M	T	E	A	A	I	D	G	G	I	T	R	D	L	Y	A	A	L	G	E	E	L	E	N	G	A	W
Secondary structure
SS confidence
Disorder																														?	?	?	?		?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Sequence		A	V	R	L	Y	Y	K	P	F	V	R	W	I	W	A	G	G	L	M	M	A	L	G	G	L	L	C	L	F	D	P	R	Y	R	K	R	V	S	P	Q	K	T	A	P	E	A	V
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3cfu chain A Region: 516 - 606 Aligned: 90 Modelled: 91 Confidence: 63.9% Identity: 14% PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 Phyre2 PDB 3mk7 chain K Region: 6 - 412 Aligned: 369 Modelled: 394 Confidence: 51.6% Identity: 12% PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase Phyre2 PDB 2aff chain A domain 1 Region: 508 - 532 Aligned: 25 Modelled: 25 Confidence: 47.6% Identity: 28% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 1r21 chain A Region: 510 - 532 Aligned: 23 Modelled: 23 Confidence: 46.8% Identity: 30% PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain Phyre2 PDB 3rko chain N Region: 243 - 500 Aligned: 258 Modelled: 258 Confidence: 46.7% Identity: 13% PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3lkx chain B Region: 574 - 593 Aligned: 20 Modelled: 20 Confidence: 29.6% Identity: 25% PDB header:chaperone Chain: B: PDB Molecule:nascent polypeptide-associated complex subunit alpha; PDBTitle: human nac dimerization domain Phyre2 PDB 2jp3 chain A Region: 615 - 645 Aligned: 31 Modelled: 31 Confidence: 29.3% Identity: 29% PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles Phyre2 PDB 1agq chain B Region: 232 - 246 Aligned: 12 Modelled: 15 Confidence: 27.3% Identity: 42% PDB header:growth factor Chain: B: PDB Molecule:glial cell-derived neurotrophic factor; PDBTitle: glial cell-derived neurotrophic factor from rat Phyre2 PDB 1udx chain A domain 3 Region: 516 - 532 Aligned: 17 Modelled: 17 Confidence: 26.2% Identity: 29% Fold: Obg GTP-binding protein C-terminal domain Superfamily: Obg GTP-binding protein C-terminal domain Family: Obg GTP-binding protein C-terminal domain Phyre2 PDB 2ff4 chain A domain 3 Region: 508 - 531 Aligned: 24 Modelled: 24 Confidence: 20.9% Identity: 29% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 3b55 chain A domain 1 Region: 240 - 254 Aligned: 15 Modelled: 15 Confidence: 18.1% Identity: 13% Fold: EreA/ChaN-like Superfamily: EreA/ChaN-like Family: EreA-like Phyre2 PDB 2rad chain B Region: 240 - 254 Aligned: 15 Modelled: 15 Confidence: 17.4% Identity: 13% PDB header:biosynthetic protein Chain: B: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135 Phyre2 PDB 1lcy chain A Region: 515 - 565 Aligned: 49 Modelled: 51 Confidence: 16.7% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2 Phyre2 PDB 3gqs chain B Region: 508 - 533 Aligned: 26 Modelled: 26 Confidence: 14.8% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis Phyre2 PDB 1bhb chain A Region: 607 - 632 Aligned: 26 Modelled: 26 Confidence: 14.0% Identity: 31% PDB header:photoreceptor Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy Phyre2 PDB 1dlp chain A domain 1 Region: 501 - 532 Aligned: 32 Modelled: 32 Confidence: 13.9% Identity: 19% Fold: beta-Prism II Superfamily: alpha-D-mannose-specific plant lectins Family: alpha-D-mannose-specific plant lectins Phyre2 PDB 3rko chain M Region: 183 - 500 Aligned: 293 Modelled: 301 Confidence: 12.5% Identity: 15% PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 2zpm chain A Region: 515 - 579 Aligned: 63 Modelled: 65 Confidence: 11.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b Phyre2 PDB 1l9b chain M Region: 120 - 236 Aligned: 97 Modelled: 105 Confidence: 11.5% Identity: 23% Fold: Bacterial photosystem II reaction centre, L and M subunits Superfamily: Bacterial photosystem II reaction centre, L and M subunits Family: Bacterial photosystem II reaction centre, L and M subunits Phyre2 PDB 3see chain A Region: 528 - 603 Aligned: 76 Modelled: 75 Confidence: 11.4% Identity: 21% PDB header:sugar binding protein Chain: A: PDB Molecule:hypothetical sugar binding protein; PDBTitle: crystal structure of a hypothetical sugar binding protein (bt_4411)2 from bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution Phyre2 1 c3cfuA_ 2 c3mk7K_ 3 d2affa1 4 c1r21A_ 5 c3rkoN_ 6 c3lkxB_ 7 c2jp3A_ 8 c1agqB_ 9 d1udxa3 10 d2ff4a3 11 d3b55a1 12 c2radB_ 13 c1lcyA_ 14 c3gqsB_ 15 c1bhbA_ 16 d1dlpa1 17 c3rkoM_ 18 c2zpmA_ 19 d1l9bm_ 20 c3seeA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99