Email l.a.kelley@imperial.ac.uk Description P76272 Date Thu Jan 5 12:21:28 GMT 2012 Unique Job ID a224dc802c7002a2

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pj5a1 93.3 16 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 2 d1v5va1 91.2 22 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 3 c2j5uB_ 90.8 20 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 4 d1wosa1 88.2 15 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 5 c1v5vA_ 88.1 22 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution 6 d1vloa1 78.9 20 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 7 c1yx2B_ 76.7 23 PDB header:transferase Chain: B: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis 8 c1worA_ 70.4 18 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of t-protein of the glycine cleavage2 system 9 c2qf4A_ 65.5 15 PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) 10 c3girA_ 60.8 14 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae 11 c3tfhB_ 59.5 12 PDB header:transferase Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein; PDBTitle: dmsp-dependent demethylase from p. ubique - apo 12 c1wsrA_ 58.0 22 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of human t-protein of glycine cleavage2 system 13 d1c99a_ 47.9 17 Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C 14 c1pj6A_ 46.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid 15 d1fftb2 36.9 15 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 16 c1txkA_ 35.2 25 PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg 17 d1jz8a3 33.6 17 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 18 d1txka2 33.2 23 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:MdoG-like 19 c1vloA_ 32.2 16 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution 20 c1yo8A_ 27.1 13 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-2; PDBTitle: structure of the c-terminal domain of human thrombospondin-2 21 c3o0lB_ not modelled 26.7 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 22 d1yq2a3 not modelled 26.1 13 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 23 c1kqsA_ not modelled 24.8 23 PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis 24 c3cb0B_ not modelled 24.5 15 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase; PDBTitle: cobr 25 c1vlyA_ not modelled 24.2 13 PDB header:transferase Chain: A: PDB Molecule:unknown protein from 2d-page; PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution 26 d1wgba_ not modelled 22.2 15 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:NADH:FMN oxidoreductase-like 27 d1kkga_ not modelled 19.9 38 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 28 c2c1lA_ not modelled 18.8 23 PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease 29 d1pa4a_ not modelled 18.2 44 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 30 c2kzfA_ not modelled 18.1 38 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosome-binding factor a; PDBTitle: solution nmr structure of the thermotoga maritima protein tm0855 a2 putative ribosome binding factor a 31 c2r6vA_ not modelled 18.0 15 PDB header:flavoprotein Chain: A: PDB Molecule:uncharacterized protein ph0856; PDBTitle: crystal structure of fmn-binding protein (np_142786.1) from pyrococcus2 horikoshii at 1.35 a resolution 32 c2r39A_ not modelled 17.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 33 c2r0xA_ not modelled 16.9 10 PDB header:oxidoreductase Chain: A: PDB Molecule:possible flavin reductase; PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution 34 d2dyja1 not modelled 16.6 34 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 35 d1bhua_ not modelled 15.8 20 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Streptomyces metalloproteinase inhibitor, SMPI 36 d1v58a2 not modelled 15.2 21 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 37 c3fljA_ not modelled 14.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution 38 c1w2tE_ not modelled 14.4 10 PDB header:hydrolase Chain: E: PDB Molecule:beta fructosidase; PDBTitle: beta-fructosidase from thermotoga maritima in complex with2 raffinose 39 c2kebA_ not modelled 14.4 11 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 40 c2zjbB_ not modelled 13.3 35 PDB header:recombination Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog; PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant 41 d1josa_ not modelled 12.4 35 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 42 c3o5aB_ not modelled 12.3 16 PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids 43 c2p0yA_ not modelled 12.1 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein lp_0780; PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr6 44 c2d38A_ not modelled 11.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical nadh-dependent fmn oxidoreductase; PDBTitle: the crystal structure of flavin reductase hpac complexed with nadp+ 45 d1whva_ not modelled 11.6 30 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 46 d1v5wa_ not modelled 11.1 35 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 47 c1pznG_ not modelled 10.9 43 PDB header:recombination Chain: G: PDB Molecule:dna repair and recombination protein rad51; PDBTitle: rad51 (rada) 48 d1pzna2 not modelled 10.6 43 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 49 d2e7ga1 not modelled 10.6 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 50 c2w0mA_ not modelled 10.5 43 PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2 51 d1rz0a_ not modelled 10.4 18 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:NADH:FMN oxidoreductase-like 52 c3nmbA_ not modelled 10.3 36 PDB header:hydrolase Chain: A: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of a putative sugar hydrolase (bacova_03189) from2 bacteroides ovatus at 2.40 a resolution 53 d2axte1 not modelled 9.8 30 Fold:Single transmembrane helix Superfamily:Cytochrome b559 subunits Family:Cytochrome b559 subunits 54 c3hbkA_ not modelled 9.7 36 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase, was domain of2 unknown function (duf1080) (yp_001302580.1) from parabacteroides3 distasonis atcc 8503 at 2.36 a resolution 55 c3uaiA_ not modelled 9.7 18 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 56 c3izcN_ not modelled 9.6 22 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 57 c2jqoA_ not modelled 9.6 13 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein yoba; PDBTitle: nmr solution structure of bacillus subtilis yoba 21-120:2 northeast structural genomics consortium target sr547 58 c1pkvB_ not modelled 9.4 22 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 59 c1pkvA_ not modelled 9.4 22 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 60 c3h3lB_ not modelled 9.2 23 PDB header:hydrolase Chain: B: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of putative sugar hydrolase (yp_001304206.1) from2 parabacteroides distasonis atcc 8503 at 1.59 a resolution 61 d1mvqa_ not modelled 9.1 23 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Legume lectins 62 d2evra1 not modelled 8.6 25 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:Spr N-terminal domain-like 63 d1i8da1 not modelled 8.6 22 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 64 d2cp6a1 not modelled 8.5 15 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 65 d2i00a1 not modelled 8.5 11 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 66 d1h9wa_ not modelled 8.4 20 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Legume lectins 67 d2i1qa2 not modelled 8.3 39 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 68 d2cu6a1 not modelled 8.3 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 69 d1zy9a1 not modelled 8.3 43 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:YicI N-terminal domain-like 70 d1zq1a1 not modelled 8.3 21 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 71 d2hv2a1 not modelled 8.2 12 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 72 c1icfB_ not modelled 8.1 38 PDB header:hydrolase Chain: B: PDB Molecule:protein (cathepsin l: light chain); PDBTitle: crystal structure of mhc class ii associated p41 ii fragment in2 complex with cathepsin l 73 d2pmaa1 not modelled 8.0 16 Fold:Acid proteases Superfamily:Acid proteases Family:LPG0085-like 74 d2cb2a1 not modelled 7.9 25 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:SOR-like 75 c3k87B_ not modelled 7.9 10 PDB header:oxidoreductase Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1; PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex 76 c3u1xA_ not modelled 7.8 27 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of a putative glycosyl hydrolase (bdi_1869) from2 parabacteroides distasonis atcc 8503 at 1.70 a resolution 77 c3khsB_ not modelled 7.8 21 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 78 d1vm8a_ not modelled 7.6 26 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 79 c2z8nB_ not modelled 7.6 25 PDB header:lyase Chain: B: PDB Molecule:27.5 kda virulence protein; PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase 80 d2cnaa_ not modelled 7.5 22 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Legume lectins 81 d1mzaa_ not modelled 7.5 22 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Eukaryotic proteases 82 d1tf7a2 not modelled 7.5 43 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 83 c2l66B_ not modelled 7.4 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 84 c3nfgG_ not modelled 7.4 10 PDB header:transcription Chain: G: PDB Molecule:dna-directed rna polymerase i subunit rpa49; PDBTitle: crystal structure of dimerization module of rna polymerase i2 subcomplex a49/a34.5 85 d1g7sa1 not modelled 7.3 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 86 d1o7ia_ not modelled 7.3 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 87 c1x31A_ not modelled 7.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 88 c2v31A_ not modelled 7.3 15 PDB header:ligase Chain: A: PDB Molecule:ubiquitin-activating enzyme e1 x; PDBTitle: structure of first catalytic cysteine half-domain of mouse2 ubiquitin-activating enzyme 89 d1eu3a1 not modelled 7.2 19 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 90 d2uubq1 not modelled 7.2 7 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 91 c2xlfA_ not modelled 7.2 12 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 92 c2eqnA_ not modelled 7.0 16 PDB header:transcription Chain: A: PDB Molecule:hypothetical protein loc92345; PDBTitle: solution structure of the naf1 domain of hypothetical2 protein bc008207 [homo sapiens] 93 c4a19F_ not modelled 7.0 19 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 94 c2kncA_ not modelled 6.9 19 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 95 c1jniA_ not modelled 6.8 0 PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae. 96 d1jnia_ not modelled 6.8 0 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 97 c1cn3F_ not modelled 6.8 43 PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry 98 c2ztsB_ not modelled 6.7 43 PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 99 d1iaua_ not modelled 6.7 14 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Eukaryotic proteases