Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	S	L	R	P	E	L	L	E	L	T	P	Q	A	L	T	A	L	S	N	A	G	F	V	K	R	S	L	K	E	L	E	N	G	N	V	P	E	I	S	H	E	N	D	A	L	I	A	T	F	S	D	G	V	R	T	Q	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?																												?	?	?	?	?				?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	G	Q	A	L	K	E	A	Q	C	S	C	G	A	N	G	M	C	R	H	R	V	M	L	V	L	S	Y	Q	R	L	C	A	T	T	Q	S	T	E	K	E	E	E	W	D	P	A	I	W	L	E	E	L	A	T	L	P	D	A	T
Secondary structure
SS confidence
Disorder		?	?	?		?				?																							?	?	?	?	?	?	?	?	?	?	?	?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	K	R	A	Q	A	L	V	A	K	G	I	T	I	E	L	F	C	A	P	G	E	I	P	S	A	R	L	P	M	S	D	V	R	F	Y	S	R	S	S	I	R	F	A	R	C	D	C	I	E	G	T	L	C	E	H	V	V	L	A
Secondary structure
SS confidence
Disorder																				?		?	?																						?	?		?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	Q	A	F	V	E	A	K	A	Q	Q	A	E	F	N	H	L	I	W	Q	M	R	S	E	H	V	T	S	S	D	D	P	F	A	S	E	E	G	N	A	C	R	Q	Y	V	Q	Q	L	S	Q	T	L	W	L	G	G	I	S	Q	P
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?	?				?	?		?	?		?	?	?	?	?	?	?	?	?	?	?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	I	H	Y	E	A	A	F	N	R	A	L	Q	A	A	E	T	C	N	W	R	W	V	S	E	S	L	R	Q	L	R	A	S	V	D	A	F	H	A	R	A	S	H	Y	N	A	G	E	C	L	H	Q	L	A	A	L	N	S	R	L
Secondary structure
SS confidence
Disorder																		?	?																					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	C	A	Q	E	M	A	R	R	D	S	I	G	E	V	P	P	V	P	W	R	T	V	V	G	S	G	I	A	G	E	A	K	L	D	H	L	R	L	V	S	L	G	M	R	C	W	Q	D	I	E	H	Y	G	L	R	I	W	F	T
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	P	D	T	G	S	I	L	H	L	S	R	S	W	P	R	S	E	Q	E	N	S	P	A	A	T	R	R	L	F	S	F	Q	A	G	A	L	A	G	G	Q	I	V	S	Q	A	A	K	R	S	A	D	G	E	L	L	L	A	T	R
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?	?	?			?	?		?	?	?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		N	R	L	S	S	V	V	P	L	S	P	D	A	W	Q	M	L	S	A	P	L	R	Q	P	G	I	V	A	L	R	E	Y	L	R	Q	R	P	P	A	C	I	R	P	L	N	Q	V	D	N	L	F	I	L	P	V	A	E	C	I	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?				?	?	?																					?	?	?				?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		L	G	W	D	S	S	R	Q	T	L	D	A	Q	V	I	S	G	E	G	E	D	N	V	L	T	L	S	L	P	A	S	A	S	A	P	Y	A	V	E	R	M	A	A	L	L	Q	Q	T	D	D	P	V	C	L	V	S	G	F	V	S
Secondary structure
SS confidence
Disorder																															?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		F	V	E	G	Q	L	T	L	E	P	R	V	M	M	T	K	T	R	A	W	A	L	D	A	E	T	T	P	V	A	P	L	P	S	A	S	V	L	P	V	P	S	T	A	H	Q	L	L	I	R	C	Q	A	L	L	I	Q	L	L	H
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.
Sequence		N	G	W	R	Y	Q	E	Q	S	A	I	G	Q	A
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oy5 chain A Region: 2 - 31 Aligned: 30 Modelled: 30 Confidence: 57.6% Identity: 33% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 1oy5 chain B Region: 2 - 30 Aligned: 29 Modelled: 29 Confidence: 56.7% Identity: 34% PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus Phyre2 PDB 2b5i chain D domain 2 Region: 36 - 79 Aligned: 43 Modelled: 44 Confidence: 35.6% Identity: 21% Fold: Complement control module/SCR domain Superfamily: Complement control module/SCR domain Family: Complement control module/SCR domain Phyre2 PDB 1s6l chain A domain 2 Region: 35 - 81 Aligned: 42 Modelled: 47 Confidence: 25.7% Identity: 14% Fold: NosL/MerB-like Superfamily: NosL/MerB-like Family: MerB-like Phyre2 PDB 1p9p chain A Region: 4 - 30 Aligned: 27 Modelled: 27 Confidence: 20.4% Identity: 22% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 1nfg chain A domain 1 Region: 338 - 412 Aligned: 73 Modelled: 75 Confidence: 19.5% Identity: 10% Fold: Composite domain of metallo-dependent hydrolases Superfamily: Composite domain of metallo-dependent hydrolases Family: Hydantoinase (dihydropyrimidinase) Phyre2 PDB 1ual chain A Region: 4 - 30 Aligned: 27 Modelled: 27 Confidence: 18.2% Identity: 22% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 3quv chain B Region: 3 - 30 Aligned: 27 Modelled: 28 Confidence: 17.2% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus Phyre2 PDB 3knu chain D Region: 4 - 30 Aligned: 27 Modelled: 27 Confidence: 16.7% Identity: 19% PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum Phyre2 PDB 1dx5 chain I domain 2 Region: 67 - 74 Aligned: 8 Modelled: 8 Confidence: 14.0% Identity: 38% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: EGF/Laminin Family: EGF-type module Phyre2 PDB 2l6n chain A Region: 38 - 73 Aligned: 34 Modelled: 36 Confidence: 13.4% Identity: 15% PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1; PDBTitle: nmr solution structure of the protein yp_001092504.1 Phyre2 PDB 1zak chain A domain 2 Region: 360 - 379 Aligned: 20 Modelled: 20 Confidence: 13.1% Identity: 50% Fold: Rubredoxin-like Superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain Family: Microbial and mitochondrial ADK, insert "zinc finger" domain Phyre2 PDB 2ih2 chain A domain 2 Region: 4 - 32 Aligned: 29 Modelled: 29 Confidence: 12.9% Identity: 24% Fold: DNA methylase specificity domain Superfamily: DNA methylase specificity domain Family: TaqI C-terminal domain-like Phyre2 PDB 3ky7 chain A Region: 4 - 30 Aligned: 27 Modelled: 27 Confidence: 12.5% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 Phyre2 PDB 1v85 chain A Region: 8 - 34 Aligned: 27 Modelled: 27 Confidence: 11.7% Identity: 33% PDB header:apoptosis Chain: A: PDB Molecule:similar to ring finger protein 36; PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator Phyre2 PDB 1nh8 chain A domain 2 Region: 420 - 479 Aligned: 51 Modelled: 60 Confidence: 11.6% Identity: 14% Fold: Ferredoxin-like Superfamily: GlnB-like Family: ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain Phyre2 PDB 2akj chain A domain 4 Region: 71 - 80 Aligned: 10 Modelled: 10 Confidence: 11.6% Identity: 20% Fold: Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like Family: Nitrite and sulphite reductase 4Fe-4S domain-like Phyre2 PDB 3pvc chain A Region: 16 - 31 Aligned: 16 Modelled: 16 Confidence: 11.3% Identity: 38% PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Phyre2 PDB 2e58 chain D Region: 16 - 31 Aligned: 16 Modelled: 16 Confidence: 10.5% Identity: 25% PDB header:transferase Chain: D: PDB Molecule:mnmc2; PDBTitle: crystal structure of mnmc2 from aquifex aeolicus Phyre2 PDB 1veh chain A Region: 24 - 77 Aligned: 49 Modelled: 54 Confidence: 10.4% Identity: 20% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 1 d1oy5a_ 2 c1oy5B_ 3 d2b5id2 4 d1s6la2 5 d1p9pa_ 6 d1nfga1 7 d1uala_ 8 c3quvB_ 9 c3knuD_ 10 d1dx5i2 11 c2l6nA_ 12 d1zaka2 13 d2ih2a2 14 c3ky7A_ 15 c1v85A_ 16 d1nh8a2 17 d2akja4 18 c3pvcA_ 19 c2e58D_ 20 d1veha_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oy5a_ 57.6 33 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 2 c1oy5B_ 56.7 34 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 3 d2b5id2 35.6 21 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 4 d1s6la2 25.7 14 Fold:NosL/MerB-like Superfamily:NosL/MerB-like Family:MerB-like 5 d1p9pa_ 20.4 22 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 6 d1nfga1 19.5 10 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 7 d1uala_ 18.2 22 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 8 c3quvB_ 17.2 11 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 9 c3knuD_ 16.7 19 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 10 d1dx5i2 14.0 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 11 c2l6nA_ 13.4 15 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1; PDBTitle: nmr solution structure of the protein yp_001092504.1 12 d1zaka2 13.1 50 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 13 d2ih2a2 12.9 24 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:TaqI C-terminal domain-like 14 c3ky7A_ 12.5 22 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 15 c1v85A_ 11.7 33 PDB header:apoptosis Chain: A: PDB Molecule:similar to ring finger protein 36; PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator 16 d1nh8a2 11.6 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 17 d2akja4 11.6 20 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 18 c3pvcA_ 11.3 38 PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis 19 c2e58D_ 10.5 25 PDB header:transferase Chain: D: PDB Molecule:mnmc2; PDBTitle: crystal structure of mnmc2 from aquifex aeolicus 20 d1veha_ 10.4 20 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 21 c3luuA_ not modelled 10.3 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution 22 d2bt6a1 not modelled 10.1 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 23 d1zj8a4 not modelled 9.6 10 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 24 c3pghD_ not modelled 9.3 23 PDB header:oxidoreductase Chain: D: PDB Molecule:cyclooxygenase-2; PDBTitle: cyclooxygenase-2 (prostaglandin synthase-2) complexed with a non-2 selective inhibitor, flurbiprofen 25 c2jdjB_ not modelled 9.3 7 PDB header:biosynthetic protein Chain: B: PDB Molecule:redy-like protein; PDBTitle: crystal structure of hapk from hahella chejuensis 26 d1nkia_ not modelled 9.2 30 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 27 c1ddxA_ not modelled 8.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (prostaglandin h2 synthase-2); PDBTitle: crystal structure of a mixture of arachidonic acid and prostaglandin2 bound to the cyclooxygenase active site of cox-2: prostaglandin3 structure 28 d3cu0a1 not modelled 8.4 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 29 d1m7xa1 not modelled 8.3 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 30 d3proc2 not modelled 8.0 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Alpha-lytic protease prodomain Family:Alpha-lytic protease prodomain 31 c1pggB_ not modelled 7.8 38 PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin h2 synthase-1; PDBTitle: prostaglandin h2 synthase-1 complexed with 1-(4-iodobenzoyl)-5-2 methoxy-2-methylindole-3-acetic acid (iodoindomethacin), trans model 32 c1ht8B_ not modelled 7.8 38 PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin h2 synthase-1; PDBTitle: the 2.7 angstrom resolution model of ovine cox-1 complexed with2 alclofenac 33 c2oyuP_ not modelled 7.7 38 PDB header:oxidoreductase Chain: P: PDB Molecule:prostaglandin g/h synthase 1; PDBTitle: indomethacin-(s)-alpha-ethyl-ethanolamide bound to cyclooxygenase-1 34 d1xr4a2 not modelled 7.5 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 35 d2r7da1 not modelled 7.3 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 36 c2d0jD_ not modelled 7.2 25 PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form 37 d1v82a_ not modelled 7.1 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 38 c2lkjA_ not modelled 7.1 44 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-m; PDBTitle: structures and interaction analyses of the integrin alpha-m beta-22 cytoplasmic tails 39 d1wgya_ not modelled 7.1 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 40 c2ofqA_ not modelled 7.0 11 PDB header:protein transport/protein transport Chain: A: PDB Molecule:trao; PDBTitle: nmr solution structure of a complex between the virb9/virb72 interaction domains of the pkm101 type iv secretion system 41 c2kakA_ not modelled 6.8 47 PDB header:metal binding protein Chain: A: PDB Molecule:ec protein i/ii; PDBTitle: solution structure of the beta-e-domain of wheat ec-12 metallothionein 42 d1xhja_ not modelled 6.7 17 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 43 d1bxni_ not modelled 6.7 4 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 44 d1npba_ not modelled 6.7 30 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 45 c2kvhA_ not modelled 6.6 27 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 46 c2k49A_ not modelled 6.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein so_3888; PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190 47 c2x8nA_ not modelled 6.4 11 PDB header:structural genomics Chain: A: PDB Molecule:cv0863; PDBTitle: solution nmr structure of uncharacterized protein cv08632 from chromobacterium violaceum. northeast structural3 genomics target (nesg) target cvt3. ocsp4 target cv0863. 48 d1uzhc1 not modelled 6.4 9 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 49 c3iefA_ not modelled 6.4 19 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 50 c3n5nX_ not modelled 6.2 15 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 51 c2d2aA_ not modelled 6.1 25 PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters 52 c2k8oA_ not modelled 6.1 78 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-l; PDBTitle: solution structure of integrin alpha l 53 c2k7iB_ not modelled 6.1 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0339 protein atu0232; PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223. 54 d2k7ia1 not modelled 6.1 25 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 55 c1aqsA_ not modelled 6.1 43 PDB header:metallothionein Chain: A: PDB Molecule:cu-metallothionein; PDBTitle: cu-metallothionein from saccharomyces cerevisiae, nmr, 102 structures 56 d3bida1 not modelled 6.0 6 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 57 d2a2pa1 not modelled 5.9 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 58 d1tkea1 not modelled 5.9 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 59 c3ps9A_ not modelled 5.9 44 PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli 60 c2p58B_ not modelled 5.8 42 PDB header:transport protein/chaperone Chain: B: PDB Molecule:putative type iii secretion protein yscf; PDBTitle: structure of the yersinia pestis type iii secretion system2 needle protein yscf in complex with its chaperones3 ysce/yscg 61 d1rbli_ not modelled 5.7 9 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 62 c2p0tA_ not modelled 5.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0307 protein pspto_4464; PDBTitle: structural genomics, the crystal structure of a conserved putative2 protein from pseudomonas syringae pv. tomato str. dc3000 63 d2p0ta1 not modelled 5.5 14 Fold:PSPTO4464-like Superfamily:PSPTO4464-like Family:PSPTO4464-like 64 d1wxma1 not modelled 5.5 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 65 d1w7ja1 not modelled 5.5 27 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 66 c3jqoH_ not modelled 5.4 11 PDB header:transport protein Chain: H: PDB Molecule:trao protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system 67 c2k8eA_ not modelled 5.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein yegp; PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102. 68 c2apnA_ not modelled 5.3 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure 69 c2vncB_ not modelled 5.3 20 PDB header:hydrolase Chain: B: PDB Molecule:glycogen operon protein glgx; PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus 70 d1q4ga2 not modelled 5.3 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 71 c3fqmA_ not modelled 5.2 38 PDB header:metal binding protein Chain: A: PDB Molecule:non-structural protein 5a; PDBTitle: crystal structure of a novel dimeric form of hcv ns5a domain i protein 72 d1xrta1 not modelled 5.2 19 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 73 c1q40C_ not modelled 5.1 19 PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex 74 d1wjpa2 not modelled 5.1 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0