Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	L	S	G	Y	N	F	A	Y	L	D	E	Q	T	K	R	M	I	R	R	A	I	L	K	A	V	A	I	P	G	Y	Q	V	P	F	G	G	R	E	M	P	M	P	Y	G	W	G	T	G	G	I	Q	L	T	A	S	V	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	S	D	V	L	K	V	I	D	Q	G	A	D	D	T	T	N	A	V	S	I	R	N	F	F	K	R	V	T	G	V	N	T	T	E	R	T	D	D	A	T	V	I	Q	T	R	H	R	I	P	E	T	P	L	T	E	D	Q	I
Secondary structure
SS confidence
Disorder																		?														?	?	?	?	?	?			?	?					?							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	I	F	Q	V	P	I	P	E	P	L	R	F	I	E	P	R	E	T	E	T	R	T	M	H	A	L	E	E	Y	G	V	M	Q	V	K	L	Y	E	D	I	A	R	F	G	H	I	A	T	T	Y	A	Y	P	V	K	V	N	G	R
Secondary structure
SS confidence
Disorder																		?									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	V	M	D	P	S	P	I	P	K	F	D	N	P	K	M	D	M	M	P	A	L	Q	L	F	G	A	G	R	E	K	R	I	Y	A	V	P	P	F	T	R	V	E	S	L	D	F	D	D	H	P	F	T	V	Q	Q	W	D	E	P
Secondary structure
SS confidence
Disorder																	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Sequence		C	A	I	C	G	S	T	H	S	Y	L	D	E	V	V	L	D	D	A	G	N	R	M	F	V	C	S	D	T	D	Y	C	R	Q	Q	S	E	A	K	N	Q
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fsu chain A domain 1 Region: 22 - 126 Aligned: 99 Modelled: 105 Confidence: 83.2% Identity: 18% Fold: PLP-dependent transferase-like Superfamily: PhnH-like Family: PhnH-like Phyre2 PDB 2fsu chain A Region: 22 - 126 Aligned: 99 Modelled: 105 Confidence: 83.2% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein phnh; PDBTitle: crystal structure of the phnh protein from escherichia coli Phyre2 PDB 1jer chain A Region: 236 - 274 Aligned: 39 Modelled: 39 Confidence: 59.6% Identity: 23% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1jer chain A Region: 236 - 274 Aligned: 39 Modelled: 39 Confidence: 59.6% Identity: 23% PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0 Phyre2 PDB 2l1u chain A Region: 217 - 267 Aligned: 48 Modelled: 51 Confidence: 46.3% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein Phyre2 PDB 1ws8 chain A Region: 239 - 274 Aligned: 36 Modelled: 36 Confidence: 45.6% Identity: 25% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 3eg9 chain B Region: 222 - 267 Aligned: 43 Modelled: 46 Confidence: 44.8% Identity: 19% PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Phyre2 PDB 1m2v chain B Region: 222 - 267 Aligned: 43 Modelled: 46 Confidence: 40.0% Identity: 23% PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer Phyre2 PDB 2jr7 chain A Region: 225 - 268 Aligned: 39 Modelled: 44 Confidence: 36.1% Identity: 21% PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 Phyre2 PDB 1yws chain A domain 1 Region: 225 - 268 Aligned: 39 Modelled: 44 Confidence: 34.7% Identity: 33% Fold: Rubredoxin-like Superfamily: CSL zinc finger Family: CSL zinc finger Phyre2 PDB 1pd0 chain A Region: 222 - 267 Aligned: 43 Modelled: 46 Confidence: 34.6% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) Phyre2 PDB 1wge chain A domain 1 Region: 225 - 268 Aligned: 39 Modelled: 44 Confidence: 34.3% Identity: 21% Fold: Rubredoxin-like Superfamily: CSL zinc finger Family: CSL zinc finger Phyre2 PDB 1x9r chain A Region: 252 - 274 Aligned: 23 Modelled: 23 Confidence: 34.2% Identity: 26% PDB header:electron transport Chain: A: PDB Molecule:umecyanin; PDBTitle: umecyanin from horse raddish- crystal structure of the2 oxidised form Phyre2 PDB 2qkw chain A Region: 19 - 43 Aligned: 25 Modelled: 25 Confidence: 30.7% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:avirulence protein; PDBTitle: structural basis for activation of plant immunity by2 bacterial effector protein avrpto Phyre2 PDB 2qkw chain A domain 1 Region: 19 - 43 Aligned: 25 Modelled: 25 Confidence: 30.7% Identity: 20% Fold: immunoglobulin/albumin-binding domain-like Superfamily: Avirulence protein AvrPto Family: Avirulence protein AvrPto Phyre2 PDB 2fqh chain A Region: 233 - 267 Aligned: 32 Modelled: 35 Confidence: 28.5% Identity: 28% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0938; PDBTitle: nmr structure of hypothetical protein ta0938 from2 termoplasma acidophilum Phyre2 PDB 3hm2 chain G Region: 16 - 70 Aligned: 46 Modelled: 55 Confidence: 26.6% Identity: 22% PDB header:transferase Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase; PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae Phyre2 PDB 3ehb chain B domain 1 Region: 212 - 250 Aligned: 35 Modelled: 39 Confidence: 23.6% Identity: 29% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 2akl chain A Region: 240 - 271 Aligned: 24 Modelled: 32 Confidence: 22.4% Identity: 38% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa Phyre2 PDB 3cez chain A Region: 217 - 267 Aligned: 48 Modelled: 51 Confidence: 20.4% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei Phyre2 1 d2fsua1 2 c2fsuA_ 3 d1jera_ 4 c1jerA_ 5 c2l1uA_ 6 d1ws8a_ 7 c3eg9B_ 8 c1m2vB_ 9 c2jr7A_ 10 d1ywsa1 11 c1pd0A_ 12 d1wgea1 13 c1x9rA_ 14 c2qkwA_ 15 d2qkwa1 16 c2fqhA_ 17 c3hm2G_ 18 d3ehbb1 19 c2aklA_ 20 c3cezA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2fsua1 83.2 18 Fold:PLP-dependent transferase-like Superfamily:PhnH-like Family:PhnH-like 2 c2fsuA_ 83.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein phnh; PDBTitle: crystal structure of the phnh protein from escherichia coli 3 d1jera_ 59.6 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 4 c1jerA_ 59.6 23 PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0 5 c2l1uA_ 46.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein 6 d1ws8a_ 45.6 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 7 c3eg9B_ 44.8 19 PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 8 c1m2vB_ 40.0 23 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer 9 c2jr7A_ 36.1 21 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 10 d1ywsa1 34.7 33 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 11 c1pd0A_ 34.6 21 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) 12 d1wgea1 34.3 21 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 13 c1x9rA_ 34.2 26 PDB header:electron transport Chain: A: PDB Molecule:umecyanin; PDBTitle: umecyanin from horse raddish- crystal structure of the2 oxidised form 14 c2qkwA_ 30.7 20 PDB header:transferase Chain: A: PDB Molecule:avirulence protein; PDBTitle: structural basis for activation of plant immunity by2 bacterial effector protein avrpto 15 d2qkwa1 30.7 20 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Avirulence protein AvrPto Family:Avirulence protein AvrPto 16 c2fqhA_ 28.5 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0938; PDBTitle: nmr structure of hypothetical protein ta0938 from2 termoplasma acidophilum 17 c3hm2G_ 26.6 22 PDB header:transferase Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase; PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae 18 d3ehbb1 23.6 29 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 19 c2aklA_ 22.4 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 20 c3cezA_ 20.4 21 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei 21 c3mb2J_ not modelled 20.4 33 PDB header:isomerase Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 22 d1qypa_ not modelled 20.3 20 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 23 d1l1da_ not modelled 19.7 27 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 24 c3hcjB_ not modelled 19.2 19 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form) 25 d1f56a_ not modelled 19.1 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 26 c4a02A_ not modelled 19.0 17 PDB header:chitin binding protein Chain: A: PDB Molecule:chitin binding protein; PDBTitle: x-ray crystallographic structure of efcbm33a 27 c1ymzA_ not modelled 19.0 71 PDB header:unknown function Chain: A: PDB Molecule:cc45; PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis 28 c3uamD_ not modelled 18.8 21 PDB header:protein binding Chain: D: PDB Molecule:chitin binding domain; PDBTitle: crystal structure of a chitin binding domain from burkholderia2 pseudomallei 29 c3l4hA_ not modelled 18.4 33 PDB header:protein binding Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1; PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1 30 c3h87D_ not modelled 18.4 40 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 31 d2fiya1 not modelled 18.3 33 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 32 c2op8A_ not modelled 18.2 13 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 33 d1ok8a2 not modelled 17.0 44 Fold:Viral glycoprotein, central and dimerisation domains Superfamily:Viral glycoprotein, central and dimerisation domains Family:Viral glycoprotein, central and dimerisation domains 34 d2bema_ not modelled 16.7 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 35 c3l9vE_ not modelled 16.3 32 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 36 c3egxB_ not modelled 15.8 21 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 37 d1v54b1 not modelled 15.7 29 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 38 c3qwnC_ not modelled 15.7 19 PDB header:antitoxin Chain: C: PDB Molecule:hypothetical nigd-like protein; PDBTitle: crystal structure of a hypothetical nigd-like protein (baccac_03262)2 from bacteroides caccae at 2.42 a resolution 39 c3abfB_ not modelled 15.7 18 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 40 c3rrrM_ not modelled 15.6 38 PDB header:viral protein Chain: M: PDB Molecule:fusion glycoprotein f0; PDBTitle: structure of the rsv f protein in the post-fusion conformation 41 d1svba2 not modelled 15.6 33 Fold:Viral glycoprotein, central and dimerisation domains Superfamily:Viral glycoprotein, central and dimerisation domains Family:Viral glycoprotein, central and dimerisation domains 42 c2ormA_ not modelled 15.5 13 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. 43 d1otfa_ not modelled 15.2 26 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 44 c3c6dB_ not modelled 14.9 44 PDB header:virus Chain: B: PDB Molecule:polyprotein; PDBTitle: the pseudo-atomic structure of dengue immature virus 45 c2bn5A_ not modelled 14.9 14 PDB header:nuclear protein Chain: A: PDB Molecule:psi; PDBTitle: p-element somatic inhibitor protein complex with u1-70k2 proline-rich peptide 46 c3uajA_ not modelled 14.8 44 PDB header:viral protein/immune system Chain: A: PDB Molecule:envelope protein; PDBTitle: crystal structure of the envelope glycoprotein ectodomain from dengue2 virus serotype 4 in complex with the fab fragment of the chimpanzee3 monoclonal antibody 5h2 47 d2cbpa_ not modelled 14.7 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 48 d3dtub1 not modelled 14.2 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 49 d1xm0a1 not modelled 14.0 16 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 50 c1urzC_ not modelled 14.0 33 PDB header:virus/viral protein Chain: C: PDB Molecule:envelope protein; PDBTitle: low ph induced, membrane fusion conformation of the2 envelope protein of tick-borne encephalitis virus 51 c2x4iA_ not modelled 13.7 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein 114; PDBTitle: orf 114a from sulfolobus islandicus rudivirus 1 52 c3e0mB_ not modelled 13.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 53 d1pd0a5 not modelled 13.4 28 Fold:Rubredoxin-like Superfamily:Zn-finger domain of Sec23/24 Family:Zn-finger domain of Sec23/24 54 d1un2a_ not modelled 13.3 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 55 d1rj9b1 not modelled 12.6 50 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 56 c3eg9A_ not modelled 12.4 16 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 57 c1uzgA_ not modelled 12.3 67 PDB header:viral protein Chain: A: PDB Molecule:major envelope protein e; PDBTitle: crystal structure of the dengue type 3 virus envelope2 protein 58 d1qnta2 not modelled 12.0 28 Fold:Ribonuclease H-like motif Superfamily:Methylated DNA-protein cysteine methyltransferase domain Family:Methylated DNA-protein cysteine methyltransferase domain 59 d2akla2 not modelled 11.8 33 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 60 c2k8dA_ not modelled 11.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb; PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase 61 d2vv5a2 not modelled 11.6 11 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 62 c3mv2A_ not modelled 11.4 21 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 63 c1vj7B_ not modelled 11.2 44 PDB header:hydrolase, transferase Chain: B: PDB Molecule:bifunctional rela/spot; PDBTitle: crystal structure of the bifunctional catalytic fragment of relseq,2 the rela/spot homolog from streptococcus equisimilis. 64 d1fvka_ not modelled 11.1 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 65 c1v55B_ not modelled 10.7 29 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 66 d1utya_ not modelled 10.6 31 Fold:BTV NS2-like ssRNA-binding domain Superfamily:BTV NS2-like ssRNA-binding domain Family:BTV NS2-like ssRNA-binding domain 67 c1utyA_ not modelled 10.6 31 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 2; PDBTitle: crystal structure of the rna binding domain of bluetongue2 virus non-structural protein 2(ns2) 68 c1m57H_ not modelled 10.5 22 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 69 c3nrtC_ not modelled 10.5 26 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative ryanodine receptor; PDBTitle: the crystal strucutre of putative ryanodine receptor from bacteroides2 thetaiotaomicron vpi-5482 70 c3mb2G_ not modelled 10.5 32 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 71 c1ar1B_ not modelled 10.4 29 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 72 c1qleB_ not modelled 10.4 29 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 73 c2of6C_ not modelled 10.1 44 PDB header:virus Chain: C: PDB Molecule:envelope glycoprotein e; PDBTitle: structure of immature west nile virus 74 c1m2oA_ not modelled 9.8 23 PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex 75 d2qtva5 not modelled 9.7 28 Fold:Rubredoxin-like Superfamily:Zn-finger domain of Sec23/24 Family:Zn-finger domain of Sec23/24 76 c2voyC_ not modelled 9.6 35 PDB header:hydrolase Chain: C: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 77 d1l1ta3 not modelled 9.5 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 78 c3ry0A_ not modelled 9.5 24 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 79 d1bjpa_ not modelled 9.4 26 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 80 c3m20A_ not modelled 9.3 13 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 81 c2iwjA_ not modelled 9.2 50 PDB header:transferase Chain: A: PDB Molecule:gag-pol polyprotein; PDBTitle: solution structure of the zn complex of hiv-2 ncp(23-49)2 peptide, encompassing protein cchc-linker, distal cchc zn-3 binding motif and c-terminal tail. 82 c2xwxB_ not modelled 8.8 13 PDB header:chitin-binding protein Chain: B: PDB Molecule:glcnac-binding protein a; PDBTitle: vibrio cholerae colonization factor gbpa crystal structure 83 d1fftb1 not modelled 8.8 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 84 c2jq4A_ not modelled 8.8 8 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein atu2571; PDBTitle: complete resonance assignments and solution structure2 calculation of atc2521 (nesg id: att6) from agrobacterium3 tumefaciens 85 d2jq4a1 not modelled 8.8 8 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 86 c2kaoA_ not modelled 8.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1; PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant) 87 c2ysbA_ not modelled 8.5 45 PDB header:protein binding Chain: A: PDB Molecule:salvador homolog 1 protein; PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1) 88 d1k9ra_ not modelled 8.5 50 Fold:WW domain-like Superfamily:WW domain Family:WW domain 89 c2hw2A_ not modelled 8.3 54 PDB header:transferase Chain: A: PDB Molecule:rifampin adp-ribosyl transferase; PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin 90 d1u5tb1 not modelled 8.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 91 c2x5cB_ not modelled 8.1 29 PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein orf131; PDBTitle: crystal structure of hypothetical protein orf131 from2 pyrobaculum spherical virus 92 d1tqza1 not modelled 8.0 15 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Necap1 N-terminal domain-like 93 d1nmva1 not modelled 7.7 40 Fold:WW domain-like Superfamily:WW domain Family:WW domain 94 c1k82D_ not modelled 7.7 25 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 95 d2joza1 not modelled 7.7 31 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 96 c1p58C_ not modelled 7.3 44 PDB header:virus Chain: C: PDB Molecule:major envelope protein e; PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction 97 d1nuia2 not modelled 7.3 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 98 c2wcuB_ not modelled 7.3 17 PDB header:isomerase Chain: B: PDB Molecule:protein fucu homolog; PDBTitle: crystal structure of mammalian fucu 99 c2x4kB_ not modelled 7.1 20 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0