PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3uajA_

Fold library id	PDB Header	Molecule	Title
c3uajA_	PDB header: viral protein/immune system	Chain: A: PDB Molecule: envelope protein;	PDBTitle: crystal structure of the envelope glycoprotein ectodomain from dengue2 virus serotype 4 in complex with the fab fragment of the chimpanzee3 monoclonal antibody 5h2

Links to external resources
Added to library: Sat Dec 17 18:35:46 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M R C V G V G N R D F V E G V S G G A W V D L V L E H G G C V T T M A Q G K P T L D F E L T K T T A K E V A L L R T Y C I E A S I S N I T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S S
S S
S
S S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A T R C P T Q G E P Y L K E E Q D Q Q Y I C R R D V V D R G W G N G C G L F G K G G V V T C A K F S C S G K I T G N L V Q I E N L E Y T V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
G G G T
T T S T T T T
S S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V T V H N H G V T A M I T P R S P S V E V K L P D Y G E L T L D C E P R S G I D F N E M I L M K M K K K T W L V H K Q W F L D L P L P W T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T B
T T T
S S
G G G T T T
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G A D T H W N Y K E R M V T F K V Q D V T V L G S Q E G A M H S A L A G A T E V D S G D G N H M F A G H L K C K V R M E K L R I K G M S Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
G G G T
B
T S S S
S S S
B
S S
T T B
T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence M C S G K F S I D K E M A E T Q H G T T V V K V K Y E G A G A P C K V P I E I R D V N K E K V V G R I I S S T P L A E N T N S V T N I E L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S
T T S
S S
S
T T S
S B
S S S S
S T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . .

Sequence P P F G D S Y I V I G V G N S A L T L H W F R K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	R	C	V	G	V	G	N	R	D	F	V	E	G	V	S	G	G	A	W	V	D	L	V	L	E	H	G	G	C	V	T	T	M	A	Q	G	K	P	T	L	D	F	E	L	T	K	T	T	A	K	E	V	A	L	L	R	T	Y	C	I	E	A	S	I	S	N	I	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T		S	S								S	S		S								S	S								T	T															S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	T	R	C	P	T	Q	G	E	P	Y	L	K	E	E	Q	D	Q	Q	Y	I	C	R	R	D	V	V	D	R	G	W	G	N	G	C	G	L	F	G	K	G	G	V	V	T	C	A	K	F	S	C	S	G	K	I	T	G	N	L	V	Q	I	E	N	L	E	Y	T	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S						G	G	G	T		T	T											S	T	T	T	T		S	S																									T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	T	V	H	N	H	G	V	T	A	M	I	T	P	R	S	P	S	V	E	V	K	L	P	D	Y	G	E	L	T	L	D	C	E	P	R	S	G	I	D	F	N	E	M	I	L	M	K	M	K	K	K	T	W	L	V	H	K	Q	W	F	L	D	L	P	L	P	W	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													B	T	T	B								T	T	T												S	S		G	G	G							T	T												T			S				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	A	D	T	H	W	N	Y	K	E	R	M	V	T	F	K	V	Q	D	V	T	V	L	G	S	Q	E	G	A	M	H	S	A	L	A	G	A	T	E	V	D	S	G	D	G	N	H	M	F	A	G	H	L	K	C	K	V	R	M	E	K	L	R	I	K	G	M	S	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						B		G	G	G	T													B									T	S	S	S						S	S	S		B			S	S									T	T	B			T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	M	C	S	G	K	F	S	I	D	K	E	M	A	E	T	Q	H	G	T	T	V	V	K	V	K	Y	E	G	A	G	A	P	C	K	V	P	I	E	I	R	D	V	N	K	E	K	V	V	G	R	I	I	S	S	T	P	L	A	E	N	T	N	S	V	T	N	I	E	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B			S												T	T	S										S	S			S										T	T	S		S	B					S	S	S	S					S	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence	P	P	F	G	D	S	Y	I	V	I	G	V	G	N	S	A	L	T	L	H	W	F	R	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S								S	S	T	T	S	S