Email l.a.kelley@imperial.ac.uk Description P36995 Date Thu Jan 5 11:54:08 GMT 2012 Unique Job ID 998ad6a40e37aa2c

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1h95a_ 99.9 46 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 2 d1mjca_ 99.9 80 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 3 d1g6pa_ 99.9 53 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 4 c3a0jB_ 99.9 55 PDB header:transcription Chain: B: PDB Molecule:cold shock protein; PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8 5 c3camB_ 99.9 54 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 6 d2es2a1 99.9 61 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 7 d1c9oa_ 99.9 55 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 8 c2k5nA_ 99.8 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cold-shock protein; PDBTitle: solution nmr structure of the n-terminal domain of protein2 eca1580 from erwinia carotovora, northeast structural3 genomics consortium target ewr156a 9 c2kcmA_ 99.8 33 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. 10 c3aqqD_ 99.8 35 PDB header:dna binding protein Chain: D: PDB Molecule:calcium-regulated heat stable protein 1; PDBTitle: crystal structure of human crhsp-24 11 c3trzE_ 99.8 43 PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element 12 c2ytyA_ 99.7 30 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein) 13 c2ytxA_ 99.7 29 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein) 14 d1wfqa_ 99.7 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 15 c1x65A_ 99.6 29 PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein) 16 c2bh8B_ 99.6 63 PDB header:transcription Chain: B: PDB Molecule:1b11; PDBTitle: combinatorial protein 1b11 17 c2ytvA_ 99.5 31 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein) 18 d2ix0a2 97.6 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 19 c2ix1A_ 97.3 23 PDB header:hydrolase Chain: A: PDB Molecule:exoribonuclease 2; PDBTitle: rnase ii d209n mutant 20 c2a8vA_ 96.3 26 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 21 d1a62a2 not modelled 96.2 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 d2ix0a1 not modelled 95.5 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 23 d1smxa_ not modelled 95.0 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 24 c2k52A_ not modelled 93.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 25 c2vnuD_ not modelled 93.3 22 PDB header:hydrolase/rna Chain: D: PDB Molecule:exosome complex exonuclease rrp44; PDBTitle: crystal structure of sc rrp44 26 c3go5A_ not modelled 91.8 14 PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution 27 d1kl9a2 not modelled 89.6 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 28 d1y14b1 not modelled 88.5 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 29 d1u0la1 not modelled 88.2 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 30 c1xpuB_ not modelled 86.5 26 PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) 31 d1hh2p1 not modelled 85.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 32 c1hh2P_ not modelled 82.2 13 PDB header:transcription regulation Chain: P: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima 33 c1l2fA_ not modelled 81.8 13 PDB header:transcription Chain: A: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain 34 d2c35b1 not modelled 81.7 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 35 c2cqoA_ not modelled 81.5 18 PDB header:ribosome Chain: A: PDB Molecule:nucleolar protein of 40 kda; PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067 36 c2wp8J_ not modelled 77.7 23 PDB header:hydrolase Chain: J: PDB Molecule:exosome complex exonuclease dis3; PDBTitle: yeast rrp44 nuclease 37 c2khiA_ not modelled 77.2 23 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 38 d2nn6h1 not modelled 77.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 d2z0sa1 not modelled 77.0 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 40 c1u0lB_ not modelled 74.6 9 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 41 c2l55A_ not modelled 71.3 25 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 42 d2ba0a1 not modelled 70.7 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 43 c1zeqX_ not modelled 70.5 15 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 44 c2c4rL_ not modelled 69.0 19 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 45 c3l0oB_ not modelled 68.0 29 PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima 46 c2oceA_ not modelled 67.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 47 d1wi5a_ not modelled 63.3 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 d1q46a2 not modelled 61.8 7 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 49 c2khjA_ not modelled 61.6 19 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 50 d1go3e1 not modelled 59.8 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 51 c2eqsA_ not modelled 59.4 19 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dhx8; PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8 52 d3bzka4 not modelled 59.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 c2k4kA_ not modelled 57.7 22 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 54 c3h0gS_ not modelled 55.0 26 PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 55 c1q46A_ not modelled 54.7 9 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia 56 d2je6i1 not modelled 54.4 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 57 c2z0sA_ not modelled 51.3 11 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 58 d1j6qa_ not modelled 50.5 20 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 59 c1j6qA_ not modelled 50.5 20 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme 60 d2asba1 not modelled 49.7 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 61 d2vnud3 not modelled 49.4 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 62 c2c35F_ not modelled 45.5 17 PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii 63 c2opgB_ not modelled 43.0 14 PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 10th pdz domain of mpdz 64 d1h9ma2 not modelled 39.9 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 65 c2xnqA_ not modelled 39.2 32 PDB header:rna binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3; PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm 66 c2je6I_ not modelled 38.1 19 PDB header:hydrolase Chain: I: PDB Molecule:exosome complex rna-binding protein 1; PDBTitle: structure of a 9-subunit archaeal exosome 67 c2ahoB_ not modelled 38.0 22 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: structure of the archaeal initiation factor eif2 alpha-2 gamma heterodimer from sulfolobus solfataricus complexed3 with gdpnp 68 c2pmzE_ not modelled 36.8 24 PDB header:translation, transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 69 c1nt9G_ not modelled 36.8 24 PDB header:transcription, transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii 70 c2iwnA_ not modelled 36.6 12 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 3rd pdz domain of multiple pdz domain protein mpdz (casp2 target) 71 c2dhxA_ not modelled 34.5 16 PDB header:rna binding protein Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 10 PDBTitle: solution structure of the rrm domain in the human poly (adp-2 ribose) polymerase family, member 10 variant 72 d1ueqa_ not modelled 33.2 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 73 d2ahob2 not modelled 32.1 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 c2ba0A_ not modelled 31.9 11 PDB header:rna binding protein Chain: A: PDB Molecule:archeal exosome rna binding protein rrp4; PDBTitle: archaeal exosome core 75 c1q8kA_ not modelled 31.9 11 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 PDBTitle: solution structure of alpha subunit of human eif2 76 d1sroa_ not modelled 31.0 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 77 c3psiA_ not modelled 30.8 13 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 78 c2dc2A_ not modelled 30.7 16 PDB header:structural protein Chain: A: PDB Molecule:golgi associated pdz and coiled-coil motif PDBTitle: solution structure of pdz domain 79 c1yz6A_ not modelled 29.6 26 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 alpha PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi 80 c2qt7B_ not modelled 28.9 30 PDB header:hydrolase Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like PDBTitle: crystallographic structure of the mature ectodomain of the2 human receptor-type protein-tyrosine phosphatase ia-2 at3 1.30 angstroms 81 d1be9a_ not modelled 28.8 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 82 c2b8kG_ not modelled 28.3 27 PDB header:transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: 12-subunit rna polymerase ii 83 d1qaua_ not modelled 27.9 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 84 d1fr3a_ not modelled 27.4 19 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 85 c2edzA_ not modelled 26.6 16 PDB header:signaling protein Chain: A: PDB Molecule:pdz domain-containing protein 1; PDBTitle: solution structures of the pdz domain of mus musculus pdz2 domain-containing protein 1 86 d1h9ma1 not modelled 26.6 13 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 87 c2asbA_ not modelled 26.0 7 PDB header:transcription/rna Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex 88 c2gu1A_ not modelled 25.9 22 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 89 c1go3E_ not modelled 25.4 27 PDB header:transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: structure of an archeal homolog of the eukaryotic rna2 polymerase ii rpb4/rpb7 complex 90 c2i38A_ not modelled 25.4 29 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 91 c2pkuA_ not modelled 23.7 10 PDB header:protein binding Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: solution structure of pick1 pdz in complex with the2 carboxyl tail peptide of glur2 92 c2q3gA_ not modelled 23.5 14 PDB header:structural genomics Chain: A: PDB Molecule:pdz and lim domain protein 7; PDBTitle: structure of the pdz domain of human pdlim7 bound to a c-2 terminal extension from human beta-tropomyosin 93 c3soeA_ not modelled 22.6 19 PDB header:signaling protein Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain- PDBTitle: crystal structure of the 3rd pdz domain of the human membrane-2 associated guanylate kinase, ww and pdz domain-containing protein 33 (magi3) 94 d1rgwa_ not modelled 21.9 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 95 c2i04B_ not modelled 21.7 20 PDB header:peptide binding protein Chain: B: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: x-ray crystal structure of magi-1 pdz1 bound to the c-2 terminal peptide of hpv18 e6 96 c3ggeA_ not modelled 21.3 17 PDB header:protein binding Chain: A: PDB Molecule:pdz domain-containing protein gipc2; PDBTitle: crystal structure of the pdz domain of pdz domain-containing protein2 gipc2 97 c3bpuA_ not modelled 20.7 21 PDB header:transferase Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain- PDBTitle: crystal structure of the 3rd pdz domain of human membrane associated2 guanylate kinase, c677s and c709s double mutant 98 d1guta_ not modelled 20.2 15 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 99 c2kjdA_ not modelled 20.2 16 PDB header:signaling protein Chain: A: PDB Molecule:sodium/hydrogen exchange regulatory cofactor nhe- PDBTitle: solution structure of extended pdz2 domain from nherf1 (150-2 270)