Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP36683
DateThu Jan 5 11:53:49 GMT 2012
Unique Job ID99762b87b89125d7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1l5jB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:aconitate hydratase 2;
PDBTitle: crystal structure of e. coli aconitase b.
Confidence and coverage
Confidence:100.0% Coverage:100%
862 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA
Secondary structure 
SS confidence 
Disorder  ??
??
???
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  AYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS
Secondary structure 
SS confidence 
Disorder  ?
?
??
?
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD
Secondary structure 
SS confidence 
Disorder 
??
???
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV
Secondary structure 
SS confidence 
Disorder 
?
?
????
??????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN
Secondary structure 
SS confidence 
Disorder 
??
?
?
??
??
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA
Secondary structure 
SS confidence 
Disorder 
???????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM
Secondary structure 
SS confidence 
Disorder  ?????????????????????
????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEA
Secondary structure 
SS confidence 
Disorder 
???????
??
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  DADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  GKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA
Secondary structure 
SS confidence 
Disorder 
?
??????
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  DGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDT
Secondary structure 
SS confidence 
Disorder  ?
?
Disorder confidence 
 
   .........850.........860.....
Sequence  YRYLNFNQLSQYTEKADGVIFQTAV
Secondary structure 
SS confidence 
Disorder 
????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1l5j chain B

3D model

Region: 1 - 862
Aligned: 862
Modelled: 862
Confidence: 100.0%
Identity: 100%
PDB header:lyase
Chain: B: PDB Molecule:aconitate hydratase 2;
PDBTitle: crystal structure of e. coli aconitase b.

Phyre2

PDB 1l5j chain A domain 3

3D model

Region: 373 - 862
Aligned: 490
Modelled: 490
Confidence: 100.0%
Identity: 100%
Fold: Aconitase iron-sulfur domain
Superfamily: Aconitase iron-sulfur domain
Family: Aconitase iron-sulfur domain

Phyre2

PDB 1aco chain A domain 2

3D model

Region: 380 - 849
Aligned: 432
Modelled: 450
Confidence: 100.0%
Identity: 22%
Fold: Aconitase iron-sulfur domain
Superfamily: Aconitase iron-sulfur domain
Family: Aconitase iron-sulfur domain

Phyre2

PDB 5acn chain A

3D model

Region: 380 - 862
Aligned: 445
Modelled: 463
Confidence: 100.0%
Identity: 22%
PDB header:lyase(carbon-oxygen)
Chain: A: PDB Molecule:aconitase;
PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal

Phyre2

PDB 2b3y chain A domain 2

3D model

Region: 384 - 856
Aligned: 444
Modelled: 460
Confidence: 100.0%
Identity: 22%
Fold: Aconitase iron-sulfur domain
Superfamily: Aconitase iron-sulfur domain
Family: Aconitase iron-sulfur domain

Phyre2

PDB 2b3y chain B

3D model

Region: 384 - 856
Aligned: 444
Modelled: 473
Confidence: 100.0%
Identity: 22%
PDB header:lyase
Chain: B: PDB Molecule:iron-responsive element binding protein 1;
PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)

Phyre2

PDB 1l5j chain A domain 1

3D model

Region: 1 - 160
Aligned: 160
Modelled: 160
Confidence: 100.0%
Identity: 100%
Fold: alpha-alpha superhelix
Superfamily: Aconitase B, N-terminal domain
Family: Aconitase B, N-terminal domain

Phyre2

PDB 1l5j chain A domain 2

3D model

Region: 161 - 372
Aligned: 212
Modelled: 212
Confidence: 100.0%
Identity: 100%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: LeuD/IlvD-like
Family: LeuD-like

Phyre2

PDB 1v7l chain A

3D model

Region: 166 - 352
Aligned: 156
Modelled: 159
Confidence: 99.9%
Identity: 28%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: LeuD/IlvD-like
Family: LeuD-like

Phyre2

PDB 2pkp chain A

3D model

Region: 166 - 353
Aligned: 159
Modelled: 160
Confidence: 99.9%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase small subunit;
PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271)

Phyre2

PDB 2b3y chain A domain 1

3D model

Region: 155 - 351
Aligned: 178
Modelled: 185
Confidence: 99.7%
Identity: 25%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: LeuD/IlvD-like
Family: LeuD-like

Phyre2

PDB 1aco chain A domain 1

3D model

Region: 169 - 356
Aligned: 174
Modelled: 176
Confidence: 99.7%
Identity: 22%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: LeuD/IlvD-like
Family: LeuD-like

Phyre2

PDB 2hcu chain A

3D model

Region: 165 - 342
Aligned: 158
Modelled: 166
Confidence: 99.6%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans

Phyre2

PDB 3q3w chain B

3D model

Region: 165 - 342
Aligned: 159
Modelled: 166
Confidence: 99.6%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni.

Phyre2

PDB 3h5j chain A

3D model

Region: 165 - 342
Aligned: 151
Modelled: 165
Confidence: 99.5%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis

Phyre2

PDB 3t07 chain D

3D model

Region: 220 - 319
Aligned: 95
Modelled: 98
Confidence: 87.8%
Identity: 20%
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid

Phyre2

PDB 2e28 chain A

3D model

Region: 201 - 319
Aligned: 119
Modelled: 119
Confidence: 72.5%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus

Phyre2

PDB 1kbl chain A domain 2

3D model

Region: 266 - 320
Aligned: 49
Modelled: 55
Confidence: 54.6%
Identity: 20%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: Phosphohistidine domain
Family: Pyruvate phosphate dikinase, central domain

Phyre2

PDB 1vbg chain A domain 2

3D model

Region: 266 - 333
Aligned: 54
Modelled: 68
Confidence: 53.4%
Identity: 15%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: Phosphohistidine domain
Family: Pyruvate phosphate dikinase, central domain

Phyre2

PDB 1h6z chain A domain 2

3D model

Region: 266 - 320
Aligned: 47
Modelled: 55
Confidence: 45.4%
Identity: 21%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: Phosphohistidine domain
Family: Pyruvate phosphate dikinase, central domain

Phyre2
1
c1l5jB_
2
d1l5ja3
3
d1acoa2
4
c5acnA_
5
d2b3ya2
6
c2b3yB_
7
d1l5ja1
8
d1l5ja2
9
d1v7la_
10
c2pkpA_
11
d2b3ya1
12
d1acoa1
13
c2hcuA_
14
c3q3wB_
15
c3h5jA_
16
c3t07D_
17
c2e28A_
18
d1kbla2
19
d1vbga2
20
d1h6za2
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
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49
50
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54
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1l5jB_
100.0 100 PDB header:lyase
Chain: B: PDB Molecule:aconitate hydratase 2;
PDBTitle: crystal structure of e. coli aconitase b.
2d1l5ja3
100.0 100 Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
3d1acoa2
100.0 22 Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
4c5acnA_
100.0 22 PDB header:lyase(carbon-oxygen)
Chain: A: PDB Molecule:aconitase;
PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal
5d2b3ya2
100.0 22 Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
6c2b3yB_
100.0 22 PDB header:lyase
Chain: B: PDB Molecule:iron-responsive element binding protein 1;
PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
7d1l5ja1
100.0 100 Fold:alpha-alpha superhelix
Superfamily:Aconitase B, N-terminal domain
Family:Aconitase B, N-terminal domain
8d1l5ja2
100.0 100 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
9d1v7la_
99.9 28 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
10c2pkpA_
99.9 20 PDB header:lyase
Chain: A: PDB Molecule:homoaconitase small subunit;
PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271)
11d2b3ya1
99.7 25 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
12d1acoa1
99.7 22 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
13c2hcuA_
99.6 18 PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans
14c3q3wB_
99.6 16 PDB header:transferase
Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni.
15c3h5jA_
99.5 20 PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis
16c3t07D_
87.8 20 PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
17c2e28A_
72.5 22 PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus
18d1kbla2
54.6 20 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
19d1vbga2
53.4 15 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
20d1h6za2
45.4 21 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
21d1xdpa3
not modelled 42.0 11 Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
22d2fe0a1
not modelled 37.9 30 Fold:Smp-1-like
Superfamily:Smp-1-like
Family:Smp-1-like
23d2hi6a1
not modelled 35.7 21 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:AF0055-like
24d2gp4a1
not modelled 35.6 32 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
25c2gp4A_
not modelled 34.3 30 PDB header:lyase
Chain: A: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
26d2z1ca1
not modelled 31.5 11 Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
27d2ot2a1
not modelled 27.0 17 Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
28c2gefA_
not modelled 24.9 28 PDB header:hydrolase
Chain: A: PDB Molecule:protease vp4;
PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism
29d1zyma2
not modelled 23.0 14 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
30c2fsdB_
not modelled 22.8 29 PDB header:viral protein
Chain: B: PDB Molecule:putative baseplate protein;
PDBTitle: a common fold for the receptor binding domains of2 lactococcal phages? the crystal structure of the head3 domain of phage bil170
31d1kjna_
not modelled 22.3 16 Fold:Hypothetical protein MTH777 (MT0777)
Superfamily:Hypothetical protein MTH777 (MT0777)
Family:Hypothetical protein MTH777 (MT0777)
32c3d0fA_
not modelled 21.2 19 PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
33d1uw4a_
not modelled 21.2 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Smg-4/UPF3
34c3pcoC_
not modelled 20.7 23 PDB header:ligase
Chain: C: PDB Molecule:phenylalanyl-trna synthetase, alpha subunit;
PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp
35c3r74B_
not modelled 19.5 21 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
36c3d3rA_
not modelled 19.5 18 PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
37c1dgsB_
not modelled 19.3 23 PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
38d2ivda2
not modelled 19.2 29 Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:L-aminoacid/polyamine oxidase
39c1ni5A_
not modelled 18.9 9 PDB header:cell cycle
Chain: A: PDB Molecule:putative cell cycle protein mesj;
PDBTitle: structure of the mesj pp-atpase from escherichia coli
40d3d3ra1
not modelled 18.9 18 Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
41d1obra_
not modelled 18.9 22 Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Carboxypeptidase T
42c2ebbA_
not modelled 18.5 19 PDB header:lyase
Chain: A: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine2 dehydratase (pterin carbinolamine dehydratase) from3 geobacillus kaustophilus hta426
43c3k2gA_
not modelled 18.2 14 PDB header:resiniferatoxin binding protein
Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase-
PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides
44d1r5ta_
not modelled 17.8 22 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
45c2fgxA_
not modelled 17.7 40 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3.
46c3l4gI_
not modelled 17.5 21 PDB header:ligase
Chain: I: PDB Molecule:phenylalanyl-trna synthetase alpha chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
47d2pjua1
not modelled 17.3 19 Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
48c2xecD_
not modelled 17.1 9 PDB header:isomerase
Chain: D: PDB Molecule:putative maleate isomerase;
PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
49c3b8fB_
not modelled 17.1 18 PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
50d1elka_
not modelled 17.0 21 Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
51d1uwza_
not modelled 16.5 9 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
52d2d30a1
not modelled 16.5 17 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
53c3r2nC_
not modelled 16.3 12 PDB header:hydrolase
Chain: C: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae
54c2yb1A_
not modelled 16.3 19 PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate.
55c2kenA_
not modelled 15.9 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: solution nmr structure of the ob domain (residues 67-166)2 of mm0293 from methanosarcina mazei. northeast structural3 genomics consortium target mar214a.
56c2duwA_
not modelled 15.8 21 PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
57c2q5cA_
not modelled 15.8 13 PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
58c3dcpB_
not modelled 15.5 30 PDB header:hydrolase
Chain: B: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of the putative histidinol phosphatase2 hisk from listeria monocytogenes. northeast structural3 genomics consortium target lmr141.
59c3bolB_
not modelled 15.3 23 PDB header:transferase
Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine
PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
60d2jnaa1
not modelled 15.3 13 Fold:Dodecin subunit-like
Superfamily:YdgH-like
Family:YdgH-like
61c3h8aF_
not modelled 15.0 27 PDB header:lyase/protein binding
Chain: F: PDB Molecule:rnase e;
PDBTitle: crystal structure of e. coli enolase bound to its cognate rnase e2 recognition domain
62c2jz2A_
not modelled 14.9 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
63c1pt1B_
not modelled 14.7 20 PDB header:lyase
Chain: B: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine
64c2e21A_
not modelled 14.7 12 PDB header:ligase
Chain: A: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus.
65d1gg2g_
not modelled 14.6 30 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
66d2gysa1
not modelled 14.6 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
67d1w44a_
not modelled 14.4 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
68c3h8aE_
not modelled 14.3 27 PDB header:lyase/protein binding
Chain: E: PDB Molecule:rnase e;
PDBTitle: crystal structure of e. coli enolase bound to its cognate rnase e2 recognition domain
69c2owoA_
not modelled 14.1 23 PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
70d1seza2
not modelled 13.9 24 Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:L-aminoacid/polyamine oxidase
71d2fr5a1
not modelled 13.8 9 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
72d2cb5a_
not modelled 13.7 23 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Papain-like
73c1ytzI_
not modelled 13.6 25 PDB header:contractile protein
Chain: I: PDB Molecule:troponin i;
PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 activated state
74d2ga5a1
not modelled 13.6 29 Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
75c2fhdA_
not modelled 13.5 26 PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains
76c3dmoD_
not modelled 13.5 8 PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from2 burkholderia pseudomallei
77d1iuka_
not modelled 13.4 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
78d1ppya_
not modelled 13.4 20 Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Pyruvoyl dependent aspartate decarboxylase, ADC
79c2l33A_
not modelled 13.4 27 PDB header:transcription regulator
Chain: A: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e
80d1jjca_
not modelled 13.3 20 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
81c3imoC_
not modelled 13.3 26 PDB header:unknown function
Chain: C: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass14
82d2fz5a1
not modelled 13.3 9 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
83c6r1rD_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: D: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441d mutant r1 protein from2 escherichia coli
84c5r1rD_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: D: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli
85c7r1rE_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: E: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli
86c7r1rD_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: D: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli
87c6r1rE_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: E: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441d mutant r1 protein from2 escherichia coli
88c5r1rE_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: E: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli
89c5r1rF_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: F: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli
90c7r1rF_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: F: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli
91c6r1rF_
not modelled 13.2 55 PDB header:complex (oxidoreductase/peptide)
Chain: F: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase e441d mutant r1 protein from2 escherichia coli
92c2xaxD_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit
PDBTitle: ribonucleotide reductase y730no2y and y731a modified r12 subunit of e. coli
93c2xakD_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit
PDBTitle: ribonucleotide reductase y730no2y modified r1 subunit of e.2 coli
94c2x1yF_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit
PDBTitle: ribonucleotide reductase y731no2y modified r1 subunit of e.2 coli to 2.1 a resolution
95c2x3sE_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit
PDBTitle: ribonucleotide reductase y730no2y and c439a modified r12 subunit of e. coli
96c2x33F_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit
PDBTitle: ribonucleotide reductase y731no2y and y730f modified r12 subunit of e. coli
97c2x3sF_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit
PDBTitle: ribonucleotide reductase y730no2y and c439a modified r12 subunit of e. coli
98c1r1rF_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleotide reductase r2 protein;
PDBTitle: ribonucleotide reductase r1 protein mutant y730f with a2 reduced active site from escherichia coli
99c2x0zF_
not modelled 13.0 55 PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit
PDBTitle: ribonucleotide reductase y730no2y modified r1 subunit of e.2 coli

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0