Secondary structure and disorder prediction

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Sequence		M	T	K	I	I	A	V	T	A	C	P	S	G	V	A	H	T	Y	M	A	A	E	A	L	E	S	A	A	K	A	K	G	W	E	V	K	V	E	T	Q	G	S	I	G	L	E	N	E	L	T	A	E	D	V	A	S	A	D	M	V
Secondary structure
SS confidence
Disorder		?	?	?																																								?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Sequence		I	L	T	K	D	I	G	I	K	F	E	E	R	F	A	G	K	T	I	V	R	V	N	I	S	D	A	V	K	R	A	D	A	I	M	S	K	I	E	A	H	L	A	Q	T	A
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?																													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kyr chain A Region: 2 - 105 Aligned: 104 Modelled: 104 Confidence: 100.0% Identity: 44% PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 Phyre2 PDB 2r48 chain A domain 1 Region: 3 - 100 Aligned: 97 Modelled: 98 Confidence: 100.0% Identity: 42% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 2r4q chain A domain 1 Region: 3 - 100 Aligned: 95 Modelled: 96 Confidence: 100.0% Identity: 42% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 1tvm chain A Region: 2 - 102 Aligned: 92 Modelled: 101 Confidence: 97.4% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system Phyre2 PDB 1iib chain A Region: 10 - 105 Aligned: 90 Modelled: 96 Confidence: 97.0% Identity: 14% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 2a5l chain A domain 1 Region: 2 - 64 Aligned: 61 Modelled: 63 Confidence: 96.4% Identity: 20% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 1vkr chain A Region: 1 - 101 Aligned: 92 Modelled: 101 Confidence: 96.4% Identity: 18% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 1vkr chain A Region: 1 - 101 Aligned: 92 Modelled: 101 Confidence: 96.4% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii Phyre2 PDB 3czc chain A Region: 6 - 102 Aligned: 88 Modelled: 97 Confidence: 96.2% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans Phyre2 PDB 2l2q chain A Region: 10 - 105 Aligned: 89 Modelled: 96 Confidence: 96.1% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi Phyre2 PDB 3nbm chain A Region: 2 - 102 Aligned: 94 Modelled: 101 Confidence: 95.6% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. Phyre2 PDB 1ydg chain A Region: 3 - 64 Aligned: 60 Modelled: 62 Confidence: 94.4% Identity: 23% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 2ark chain A domain 1 Region: 3 - 64 Aligned: 54 Modelled: 62 Confidence: 93.9% Identity: 28% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 1ycg chain A domain 1 Region: 1 - 64 Aligned: 60 Modelled: 64 Confidence: 93.6% Identity: 22% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1qrd chain A Region: 1 - 64 Aligned: 64 Modelled: 64 Confidence: 93.5% Identity: 30% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1vme chain A domain 1 Region: 2 - 64 Aligned: 61 Modelled: 63 Confidence: 92.3% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3fni chain A Region: 2 - 64 Aligned: 60 Modelled: 62 Confidence: 91.4% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a Phyre2 PDB 3p0r chain A Region: 1 - 64 Aligned: 63 Modelled: 63 Confidence: 89.3% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne Phyre2 PDB 3d7n chain A Region: 2 - 64 Aligned: 56 Modelled: 63 Confidence: 86.6% Identity: 25% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens Phyre2 PDB 2gi4 chain A Region: 1 - 61 Aligned: 59 Modelled: 61 Confidence: 85.7% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. Phyre2 1 c2kyrA_ 2 d2r48a1 3 d2r4qa1 4 c1tvmA_ 5 d1iiba_ 6 d2a5la1 7 d1vkra_ 8 c1vkrA_ 9 c3czcA_ 10 c2l2qA_ 11 c3nbmA_ 12 d1ydga_ 13 d2arka1 14 d1ycga1 15 d1qrda_ 16 d1vmea1 17 c3fniA_ 18 c3p0rA_ 19 c3d7nA_ 20 c2gi4A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kyrA_ 100.0 44 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 2 d2r48a1 100.0 42 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 3 d2r4qa1 100.0 42 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 4 c1tvmA_ 97.4 20 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 5 d1iiba_ 97.0 14 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 6 d2a5la1 96.4 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 7 d1vkra_ 96.4 18 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 8 c1vkrA_ 96.4 18 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 9 c3czcA_ 96.2 18 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 10 c2l2qA_ 96.1 19 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 11 c3nbmA_ 95.6 15 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 12 d1ydga_ 94.4 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 13 d2arka1 93.9 28 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 14 d1ycga1 93.6 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 15 d1qrda_ 93.5 30 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 16 d1vmea1 92.3 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 17 c3fniA_ 91.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 18 c3p0rA_ 89.3 30 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 19 c3d7nA_ 86.6 25 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 20 c2gi4A_ 85.7 29 PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. 21 c2zkiH_ not modelled 84.9 22 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 22 c3rpeA_ not modelled 84.4 23 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 23 d1e5da1 not modelled 84.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 24 d1t5ba_ not modelled 83.7 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 25 c2ohiB_ not modelled 83.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 26 c3b6iB_ not modelled 80.3 23 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 27 c1zggA_ not modelled 79.0 37 PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis 28 c3f2vA_ not modelled 78.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 29 c3rh0A_ not modelled 77.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2 30 d2qwxa1 not modelled 75.3 25 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 31 c2v9cA_ not modelled 73.4 32 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 32 c1vmeB_ not modelled 68.5 11 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 33 c3fvwA_ not modelled 66.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 34 c2q62A_ not modelled 62.2 17 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 35 c2wc1A_ not modelled 59.3 22 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 36 c3lcmB_ not modelled 57.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 37 d1t0ba_ not modelled 55.4 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 38 d1dxqa_ not modelled 54.0 29 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 39 c3jviA_ not modelled 52.5 11 PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica 40 d1rtta_ not modelled 48.3 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 41 c3k9cA_ not modelled 46.9 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 42 c3snoA_ not modelled 45.5 31 PDB header:transferase Chain: A: PDB Molecule:hypothetical aminotransferase; PDBTitle: crystal structure of a hypothetical aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.60 a resolution 43 c3klbA_ not modelled 43.5 23 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 44 d2z98a1 not modelled 42.6 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 45 c2hpvA_ not modelled 42.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 46 c1ychD_ not modelled 41.4 20 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 47 d1sqsa_ not modelled 38.7 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 48 d1k4ma_ not modelled 37.9 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 49 d1acoa2 not modelled 37.5 17 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 50 d1d1qa_ not modelled 35.3 16 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 51 d2fz5a1 not modelled 34.4 30 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 52 d1rqga2 not modelled 32.5 26 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 53 c5acnA_ not modelled 30.2 17 PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal 54 c2cwdA_ not modelled 29.5 32 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8 55 c3t38B_ not modelled 29.1 18 PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1' 56 d5nula_ not modelled 28.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 57 d1oboa_ not modelled 28.6 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 58 c3h9gA_ not modelled 28.6 13 PDB header:transferase/antibiotic Chain: A: PDB Molecule:mccb protein; PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn 59 d1jf8a_ not modelled 27.5 8 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 60 d1vkna1 not modelled 26.9 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 61 c3hlyA_ not modelled 25.1 18 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 62 d1ja1a2 not modelled 24.9 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 63 d1b1ca_ not modelled 23.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 64 c2l18A_ not modelled 23.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state 65 c2fzvC_ not modelled 22.8 11 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 66 c2q9uB_ not modelled 22.8 22 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 67 c2hnbA_ not modelled 22.4 20 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 68 d1nj1a1 not modelled 21.7 15 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 69 c3cgiD_ not modelled 21.3 14 PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment 70 d1gsaa1 not modelled 20.8 28 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 71 c3hrlA_ not modelled 20.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endonuclease-like protein; PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae 72 c3djeA_ not modelled 19.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa 73 c1e5dA_ not modelled 19.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 74 d1s1ma1 not modelled 19.6 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 75 d1rlia_ not modelled 19.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 76 d2b3ya2 not modelled 18.5 30 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 77 d1h05a_ not modelled 18.3 18 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 78 c3chgB_ not modelled 17.9 36 PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa 79 c3f6sI_ not modelled 17.6 29 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 80 d2f1da1 not modelled 17.3 28 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Imidazole glycerol phosphate dehydratase 81 c1nj2A_ not modelled 17.2 15 PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus 82 d1d4aa_ not modelled 17.0 27 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 83 c3ia0c_ not modelled 16.7 18 PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant 84 d1g3qa_ not modelled 16.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 85 d1jw9b_ not modelled 16.4 18 Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Molybdenum cofactor biosynthesis protein MoeB 86 d1gqoa_ not modelled 16.3 16 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 87 c1nj8C_ not modelled 16.2 12 PDB header:ligase Chain: C: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii 88 c1vknC_ not modelled 16.2 13 PDB header:oxidoreductase Chain: C: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase; PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (tm1782) from thermotoga maritima at 1.80 a resolution 89 c1gqqA_ not modelled 16.1 14 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 90 d1q6za1 not modelled 15.9 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 91 d1iloa_ not modelled 15.9 29 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 92 c2b3yB_ not modelled 15.9 27 PDB header:lyase Chain: B: PDB Molecule:iron-responsive element binding protein 1; PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1) 93 d2fzva1 not modelled 15.7 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 94 c3cswB_ not modelled 15.7 17 PDB header:transferase Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase; PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution 95 c2ad5B_ not modelled 15.7 20 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 96 c2b76N_ not modelled 15.6 16 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 97 c2eq8C_ not modelled 14.9 27 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 98 c1zj8B_ not modelled 14.9 25 PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein 99 d1y1la_ not modelled 14.7 18 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0