Phyre 2 Results for P69816

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Email | l.a.kelley@imperial.ac.uk
Description | P69816
Date | Thu Jan 5 12:12:05 GMT 2012
Unique Job ID | 9910dc17899f5c79

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2kyrA_
Top template information
PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
104 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | K | I | I | A | V | T | A | C | P | S | G | V | A | H | T | Y | M | A | A | E | A | L | E | S | A | A | K | A | K | G | W | E | V | K | V | E | T | Q | G | S | I | G | L | E | N | E | L | T | A | E | D | V | A | S | A | D | M | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | .
Sequence |  | I | L | T | K | D | I | G | I | K | F | E | E | R | F | A | G | K | T | I | V | R | V | N | I | S | D | A | V | K | R | A | D | A | I | M | S | K | I | E | A | H | L | A | Q | T | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2kyrA_ |

### PDB 2kyr chain A

Region: 2 - 105
Aligned: 104
Modelled: 104
Confidence: 100.0%
Identity: 44%
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544

Phyre2
2 |
| d2r48a1 |

### PDB 2r48 chain A domain 1

Region: 3 - 100
Aligned: 97
Modelled: 98
Confidence: 100.0%
Identity: 42%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2
3 |
| d2r4qa1 |

### PDB 2r4q chain A domain 1

Region: 3 - 100
Aligned: 95
Modelled: 96
Confidence: 100.0%
Identity: 42%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2
4 |
| c1tvmA_ |

### PDB 1tvm chain A

Region: 2 - 102
Aligned: 92
Modelled: 101
Confidence: 97.4%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system

Phyre2
5 |
| d1iiba_ |

### PDB 1iib chain A

Region: 10 - 105
Aligned: 90
Modelled: 96
Confidence: 97.0%
Identity: 14%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2
6 |
| d2a5la1 |

### PDB 2a5l chain A domain 1

Region: 2 - 64
Aligned: 61
Modelled: 63
Confidence: 96.4%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2
7 |
| d1vkra_ |

### PDB 1vkr chain A

Region: 1 - 101
Aligned: 92
Modelled: 101
Confidence: 96.4%
Identity: 18%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2
8 |
| c1vkrA_ |

### PDB 1vkr chain A

Region: 1 - 101
Aligned: 92
Modelled: 101
Confidence: 96.4%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii

Phyre2
9 |
| c3czcA_ |

### PDB 3czc chain A

Region: 6 - 102
Aligned: 88
Modelled: 97
Confidence: 96.2%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans

Phyre2
10 |
| c2l2qA_ |

### PDB 2l2q chain A

Region: 10 - 105
Aligned: 89
Modelled: 96
Confidence: 96.1%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi

Phyre2
11 |
| c3nbmA_ |

### PDB 3nbm chain A

Region: 2 - 102
Aligned: 94
Modelled: 101
Confidence: 95.6%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.

Phyre2
12 |
| d1ydga_ |

### PDB 1ydg chain A

Region: 3 - 64
Aligned: 60
Modelled: 62
Confidence: 94.4%
Identity: 23%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2
13 |
| d2arka1 |

### PDB 2ark chain A domain 1

Region: 3 - 64
Aligned: 54
Modelled: 62
Confidence: 93.9%
Identity: 28%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2
14 |
| d1ycga1 |

### PDB 1ycg chain A domain 1

Region: 1 - 64
Aligned: 60
Modelled: 64
Confidence: 93.6%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2
15 |
| d1qrda_ |

### PDB 1qrd chain A

Region: 1 - 64
Aligned: 64
Modelled: 64
Confidence: 93.5%
Identity: 30%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2
16 |
| d1vmea1 |

### PDB 1vme chain A domain 1

Region: 2 - 64
Aligned: 61
Modelled: 63
Confidence: 92.3%
Identity: 13%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2
17 |
| c3fniA_ |

### PDB 3fni chain A

Region: 2 - 64
Aligned: 60
Modelled: 62
Confidence: 91.4%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a

Phyre2
18 |
| c3p0rA_ |

### PDB 3p0r chain A

Region: 1 - 64
Aligned: 63
Modelled: 63
Confidence: 89.3%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne

Phyre2
19 |
| c3d7nA_ |

### PDB 3d7n chain A

Region: 2 - 64
Aligned: 56
Modelled: 63
Confidence: 86.6%
Identity: 25%
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens

Phyre2
20 |
| c2gi4A_ |

### PDB 2gi4 chain A

Region: 1 - 61
Aligned: 59
Modelled: 61
Confidence: 85.7%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase;
PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2kyrA_ |
|  | 100.0 | 44 | PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
2 | d2r48a1 |
|  | 100.0 | 42 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
3 | d2r4qa1 |
|  | 100.0 | 42 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
4 | c1tvmA_ |
|  | 97.4 | 20 | PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
5 | d1iiba_ |
|  | 97.0 | 14 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit
6 | d2a5la1 |
|  | 96.4 | 20 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
7 | d1vkra_ |
|  | 96.4 | 18 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit
8 | c1vkrA_ |
|  | 96.4 | 18 | PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
9 | c3czcA_ |
|  | 96.2 | 18 | PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
10 | c2l2qA_ |
|  | 96.1 | 19 | PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
11 | c3nbmA_ |
|  | 95.6 | 15 | PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
12 | d1ydga_ |
|  | 94.4 | 23 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
13 | d2arka1 |
|  | 93.9 | 28 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
14 | d1ycga1 |
|  | 93.6 | 22 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
15 | d1qrda_ |
|  | 93.5 | 30 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
16 | d1vmea1 |
|  | 92.3 | 13 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
17 | c3fniA_ |
|  | 91.4 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
18 | c3p0rA_ |
|  | 89.3 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
19 | c3d7nA_ |
|  | 86.6 | 25 | PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
20 | c2gi4A_ |
|  | 85.7 | 29 | PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.
21 | c2zkiH_ |
| not modelled | 84.9 | 22 | PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
22 | c3rpeA_ |
| not modelled | 84.4 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
23 | d1e5da1 |
| not modelled | 84.0 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
24 | d1t5ba_ |
| not modelled | 83.7 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
25 | c2ohiB_ |
| not modelled | 83.6 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
26 | c3b6iB_ |
| not modelled | 80.3 | 23 | PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure
27 | c1zggA_ |
| not modelled | 79.0 | 37 | PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
28 | c3f2vA_ |
| not modelled | 78.4 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
29 | c3rh0A_ |
| not modelled | 77.9 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2
30 | d2qwxa1 |
| not modelled | 75.3 | 25 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
31 | c2v9cA_ |
| not modelled | 73.4 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
32 | c1vmeB_ |
| not modelled | 68.5 | 11 | PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
33 | c3fvwA_ |
| not modelled | 66.0 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.
34 | c2q62A_ |
| not modelled | 62.2 | 17 | PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti
35 | c2wc1A_ |
| not modelled | 59.3 | 22 | PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
36 | c3lcmB_ |
| not modelled | 57.7 | 21 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
37 | d1t0ba_ |
| not modelled | 55.4 | 27 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like
38 | d1dxqa_ |
| not modelled | 54.0 | 29 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
39 | c3jviA_ |
| not modelled | 52.5 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
40 | d1rtta_ |
| not modelled | 48.3 | 19 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase
41 | c3k9cA_ |
| not modelled | 46.9 | 14 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
42 | c3snoA_ |
| not modelled | 45.5 | 31 | PDB header:transferase Chain: A: PDB Molecule:hypothetical aminotransferase; PDBTitle: crystal structure of a hypothetical aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.60 a resolution
43 | c3klbA_ |
| not modelled | 43.5 | 23 | PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
44 | d2z98a1 |
| not modelled | 42.6 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
45 | c2hpvA_ |
| not modelled | 42.0 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
46 | c1ychD_ |
| not modelled | 41.4 | 20 | PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
47 | d1sqsa_ |
| not modelled | 38.7 | 16 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951
48 | d1k4ma_ |
| not modelled | 37.9 | 19 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase
49 | d1acoa2 |
| not modelled | 37.5 | 17 | Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain
50 | d1d1qa_ |
| not modelled | 35.3 | 16 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
51 | d2fz5a1 |
| not modelled | 34.4 | 30 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
52 | d1rqga2 |
| not modelled | 32.5 | 26 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
53 | c5acnA_ |
| not modelled | 30.2 | 17 | PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal
54 | c2cwdA_ |
| not modelled | 29.5 | 32 | PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8
55 | c3t38B_ |
| not modelled | 29.1 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1'
56 | d5nula_ |
| not modelled | 28.9 | 19 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
57 | d1oboa_ |
| not modelled | 28.6 | 15 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
58 | c3h9gA_ |
| not modelled | 28.6 | 13 | PDB header:transferase/antibiotic Chain: A: PDB Molecule:mccb protein; PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn
59 | d1jf8a_ |
| not modelled | 27.5 | 8 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
60 | d1vkna1 |
| not modelled | 26.9 | 13 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
61 | c3hlyA_ |
| not modelled | 25.1 | 18 | PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
62 | d1ja1a2 |
| not modelled | 24.9 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
63 | d1b1ca_ |
| not modelled | 23.0 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
64 | c2l18A_ |
| not modelled | 23.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state
65 | c2fzvC_ |
| not modelled | 22.8 | 11 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri
66 | c2q9uB_ |
| not modelled | 22.8 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
67 | c2hnbA_ |
| not modelled | 22.4 | 20 | PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin
68 | d1nj1a1 |
| not modelled | 21.7 | 15 | Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS
69 | c3cgiD_ |
| not modelled | 21.3 | 14 | PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment
70 | d1gsaa1 |
| not modelled | 20.8 | 28 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain
71 | c3hrlA_ |
| not modelled | 20.6 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endonuclease-like protein; PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae
72 | c3djeA_ |
| not modelled | 19.8 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
73 | c1e5dA_ |
| not modelled | 19.8 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
74 | d1s1ma1 |
| not modelled | 19.6 | 18 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
75 | d1rlia_ |
| not modelled | 19.0 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN
76 | d2b3ya2 |
| not modelled | 18.5 | 30 | Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain
77 | d1h05a_ |
| not modelled | 18.3 | 18 | Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase
78 | c3chgB_ |
| not modelled | 17.9 | 36 | PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
79 | c3f6sI_ |
| not modelled | 17.6 | 29 | PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
80 | d2f1da1 |
| not modelled | 17.3 | 28 | Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Imidazole glycerol phosphate dehydratase
81 | c1nj2A_ |
| not modelled | 17.2 | 15 | PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus
82 | d1d4aa_ |
| not modelled | 17.0 | 27 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase
83 | c3ia0c_ |
| not modelled | 16.7 | 18 | PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant
84 | d1g3qa_ |
| not modelled | 16.7 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
85 | d1jw9b_ |
| not modelled | 16.4 | 18 | Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Molybdenum cofactor biosynthesis protein MoeB
86 | d1gqoa_ |
| not modelled | 16.3 | 16 | Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase
87 | c1nj8C_ |
| not modelled | 16.2 | 12 | PDB header:ligase Chain: C: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii
88 | c1vknC_ |
| not modelled | 16.2 | 13 | PDB header:oxidoreductase Chain: C: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase; PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (tm1782) from thermotoga maritima at 1.80 a resolution
89 | c1gqqA_ |
| not modelled | 16.1 | 14 | PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae
90 | d1q6za1 |
| not modelled | 15.9 | 12 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
91 | d1iloa_ |
| not modelled | 15.9 | 29 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
92 | c2b3yB_ |
| not modelled | 15.9 | 27 | PDB header:lyase Chain: B: PDB Molecule:iron-responsive element binding protein 1; PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
93 | d2fzva1 |
| not modelled | 15.7 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase
94 | c3cswB_ |
| not modelled | 15.7 | 17 | PDB header:transferase Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase; PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution
95 | c2ad5B_ |
| not modelled | 15.7 | 20 | PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
96 | c2b76N_ |
| not modelled | 15.6 | 16 | PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
97 | c2eq8C_ |
| not modelled | 14.9 | 27 | PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
98 | c1zj8B_ |
| not modelled | 14.9 | 25 | PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein
99 | d1y1la_ |
| not modelled | 14.7 | 18 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0