Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	I	K	D	V	I	V	Q	G	L	W	K	N	N	S	A	L	V	Q	L	L	G	L	C	P	L	L	A	V	T	S	T	A	T	N	A	L	G	L	G	L	A	T	T	L	V	L	T	L	T	N	L	T	I	S	T	L	R
Secondary structure
SS confidence
Disorder		?	?	?																							?							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	W	T	P	A	E	I	R	I	P	I	Y	V	M	I	I	A	S	V	V	S	A	V	Q	M	L	I	N	A	Y	A	F	G	L	Y	Q	S	L	G	I	F	I	P	L	I	V	T	N	C	I	V	V	G	R	A	E	A	F	A	A
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	K	G	P	A	L	S	A	L	D	G	F	S	I	G	M	G	A	T	C	A	M	F	V	L	G	S	L	R	E	I	I	G	N	G	T	L	F	D	G	A	D	A	L	L	G	S	W	A	K	V	L	R	V	E	I	F	H	T	D
Secondary structure
SS confidence
Disorder		?																																						?		?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence		S	P	F	L	L	A	M	L	P	P	G	A	F	I	G	L	G	L	M	L	A	G	K	Y	L	I	D	E	R	M	K	K	R	R	A	E	A	A	A	E	R	A	L	P	N	G	E	T	G	N	V
Secondary structure
SS confidence
Disorder																																			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mk7 chain K Region: 174 - 219 Aligned: 46 Modelled: 46 Confidence: 37.9% Identity: 20% PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase Phyre2 PDB 3eh4 chain A Region: 151 - 230 Aligned: 80 Modelled: 80 Confidence: 33.1% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus Phyre2 PDB 2k21 chain A Region: 184 - 226 Aligned: 40 Modelled: 43 Confidence: 28.4% Identity: 20% PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c Phyre2 PDB 1xme chain A domain 1 Region: 151 - 228 Aligned: 78 Modelled: 78 Confidence: 27.6% Identity: 17% Fold: Cytochrome c oxidase subunit I-like Superfamily: Cytochrome c oxidase subunit I-like Family: Cytochrome c oxidase subunit I-like Phyre2 PDB 1pw4 chain A Region: 34 - 224 Aligned: 159 Modelled: 159 Confidence: 26.2% Identity: 16% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 1pv7 chain A Region: 32 - 222 Aligned: 162 Modelled: 162 Confidence: 25.9% Identity: 12% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 2ecb chain A domain 1 Region: 202 - 230 Aligned: 29 Modelled: 29 Confidence: 25.6% Identity: 7% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 2zme chain A Region: 13 - 42 Aligned: 30 Modelled: 30 Confidence: 22.8% Identity: 27% PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Phyre2 PDB 3din chain D Region: 60 - 100 Aligned: 41 Modelled: 41 Confidence: 21.1% Identity: 7% PDB header:membrane protein, protein transport Chain: D: PDB Molecule:preprotein translocase subunit sece; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Phyre2 PDB 3pmi chain C Region: 120 - 159 Aligned: 38 Modelled: 40 Confidence: 19.3% Identity: 18% PDB header:protein binding Chain: C: PDB Molecule:pwwp domain-containing protein mum1; PDBTitle: pwwp domain of human mutated melanoma-associated antigen 1 Phyre2 PDB 2jp3 chain A Region: 191 - 221 Aligned: 31 Modelled: 31 Confidence: 13.4% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles Phyre2 PDB 1u5t chain A Region: 13 - 42 Aligned: 30 Modelled: 30 Confidence: 12.9% Identity: 3% PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex Phyre2 PDB 1ha7 chain B Region: 67 - 100 Aligned: 33 Modelled: 34 Confidence: 12.3% Identity: 15% Fold: Globin-like Superfamily: Globin-like Family: Phycocyanin-like phycobilisome proteins Phyre2 PDB 1b8d chain A Region: 67 - 100 Aligned: 33 Modelled: 34 Confidence: 12.0% Identity: 18% Fold: Globin-like Superfamily: Globin-like Family: Phycocyanin-like phycobilisome proteins Phyre2 PDB 2ntx chain B Region: 24 - 37 Aligned: 14 Modelled: 14 Confidence: 10.9% Identity: 36% PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; Phyre2 PDB 1u5t chain A domain 1 Region: 13 - 31 Aligned: 19 Modelled: 19 Confidence: 8.4% Identity: 5% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Vacuolar sorting protein domain Phyre2 PDB 1cpc chain A Region: 67 - 111 Aligned: 42 Modelled: 45 Confidence: 8.1% Identity: 5% Fold: Globin-like Superfamily: Globin-like Family: Phycocyanin-like phycobilisome proteins Phyre2 PDB 3mlq chain D Region: 144 - 157 Aligned: 14 Modelled: 14 Confidence: 8.0% Identity: 29% PDB header:transferase/transcription Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain Phyre2 PDB 1phn chain B Region: 67 - 107 Aligned: 40 Modelled: 41 Confidence: 8.0% Identity: 18% Fold: Globin-like Superfamily: Globin-like Family: Phycocyanin-like phycobilisome proteins Phyre2 PDB 1eyx chain B Region: 67 - 100 Aligned: 33 Modelled: 34 Confidence: 7.9% Identity: 15% Fold: Globin-like Superfamily: Globin-like Family: Phycocyanin-like phycobilisome proteins Phyre2 1 c3mk7K_ 2 c3eh4A_ 3 c2k21A_ 4 d1xmea1 5 d1pw4a_ 6 d1pv7a_ 7 d2ecba1 8 c2zmeA_ 9 c3dinD_ 10 c3pmiC_ 11 c2jp3A_ 12 c1u5tA_ 13 d1ha7b_ 14 d1b8da_ 15 c2ntxB_ 16 d1u5ta1 17 d1cpca_ 18 c3mlqD_ 19 d1phnb_ 20 d1eyxb_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mk7K_ 37.9 20 PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase 2 c3eh4A_ 33.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus 3 c2k21A_ 28.4 20 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 4 d1xmea1 27.6 17 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 5 d1pw4a_ 26.2 16 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 6 d1pv7a_ 25.9 12 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 7 d2ecba1 25.6 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 8 c2zmeA_ 22.8 27 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 9 c3dinD_ 21.1 7 PDB header:membrane protein, protein transport Chain: D: PDB Molecule:preprotein translocase subunit sece; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 10 c3pmiC_ 19.3 18 PDB header:protein binding Chain: C: PDB Molecule:pwwp domain-containing protein mum1; PDBTitle: pwwp domain of human mutated melanoma-associated antigen 1 11 c2jp3A_ 13.4 16 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 12 c1u5tA_ 12.9 3 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 13 d1ha7b_ 12.3 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 14 d1b8da_ 12.0 18 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 15 c2ntxB_ 10.9 36 PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; 16 d1u5ta1 8.4 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 17 d1cpca_ 8.1 5 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 18 c3mlqD_ 8.0 29 PDB header:transferase/transcription Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 19 d1phnb_ 8.0 18 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 20 d1eyxb_ 7.9 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 21 c3mlqB_ not modelled 7.8 29 PDB header:transferase/transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 22 c2jo1A_ not modelled 7.6 9 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 23 d1a6qa1 not modelled 7.6 80 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 24 d1v54a_ not modelled 7.4 9 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 25 c1qfqB_ not modelled 7.3 43 PDB header:transcription/rna Chain: B: PDB Molecule:36-mer n-terminal peptide of the n protein; PDBTitle: bacteriophage lambda n-protein-nutboxb-rna complex 26 c2c7jB_ not modelled 7.2 18 PDB header:electron transport Chain: B: PDB Molecule:phycoerythrocyanin beta chain; PDBTitle: phycoerythrocyanin from mastigocladus laminosus, 295 k,2 3.0 a 27 d1ffta_ not modelled 7.0 9 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 28 c1fftF_ not modelled 7.0 9 PDB header:oxidoreductase Chain: F: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 29 c2e19A_ not modelled 6.8 6 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 30 d1cpcb_ not modelled 6.8 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 31 c3mp7A_ not modelled 6.7 50 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase subunit secy; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 32 c2kncA_ not modelled 6.7 8 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 33 d1hynp_ not modelled 6.6 26 Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:Anion transport protein, cytoplasmic domain 34 c2rddB_ not modelled 6.6 14 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 35 d1liab_ not modelled 6.5 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 36 c1hynQ_ not modelled 6.5 16 PDB header:membrane protein Chain: Q: PDB Molecule:band 3 anion transport protein; PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein 37 d1kn1a_ not modelled 6.4 21 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 38 d1ar1a_ not modelled 6.4 2 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 39 d1xmec1 not modelled 6.3 53 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 40 d1f99b_ not modelled 6.2 20 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 41 c2bbjB_ not modelled 6.1 17 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 42 c3smaD_ not modelled 6.0 41 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 43 d1vp8a_ not modelled 5.9 25 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 44 c2vmlD_ not modelled 5.8 13 PDB header:photosynthesis Chain: D: PDB Molecule:phycocyanin beta chain; PDBTitle: the monoclinic structure of phycocyanin from gloeobacter2 violaceus 45 c3hwpA_ not modelled 5.8 23 PDB header:hydrolase Chain: A: PDB Molecule:phlg; PDBTitle: crystal structure and computational analyses provide insights into the2 catalytic mechanism of 2, 4-diacetylphloroglucinol hydrolase phlg3 from pseudomonas fluorescens 46 c2da7A_ not modelled 5.8 9 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger homeobox protein 1b; PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1) 47 c3e4fB_ not modelled 5.8 41 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 48 c1cw5A_ not modelled 5.7 29 PDB header:toxin Chain: A: PDB Molecule:type iia bacteriocin carnobacteriocin b2; PDBTitle: solution structure of carnobacteriocin b2 49 d2h8pc1 not modelled 5.7 11 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 50 d1mtyg_ not modelled 5.7 15 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 51 c1jb0K_ not modelled 5.7 11 PDB header:photosynthesis Chain: K: PDB Molecule:photosystem 1 reaction centre subunit x; PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria 52 d1jb0k_ not modelled 5.7 11 Fold:Photosystem I reaction center subunit X, PsaK Superfamily:Photosystem I reaction center subunit X, PsaK Family:Photosystem I reaction center subunit X, PsaK 53 c3gitA_ not modelled 5.7 10 PDB header:transferase Chain: A: PDB Molecule:carbon monoxide dehydrogenase/acetyl-coa synthase subunit PDBTitle: crystal structure of a truncated acetyl-coa synthase 54 d1unld_ not modelled 5.6 29 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 55 c1q90L_ not modelled 5.6 38 PDB header:photosynthesis Chain: L: PDB Molecule:cytochrome b6f complex subunit petl; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 56 d1q90l_ not modelled 5.6 38 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 57 d1mhyg_ not modelled 5.6 10 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 58 c2ka2A_ not modelled 5.4 33 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 59 c2ka1B_ not modelled 5.4 33 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 60 c2ka1A_ not modelled 5.4 33 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 61 c2ka2B_ not modelled 5.4 33 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 62 d1ha7a_ not modelled 5.4 14 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 63 d1jboa_ not modelled 5.4 10 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 64 c1m56G_ not modelled 5.3 5 PDB header:oxidoreductase Chain: G: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type) 65 c1peiA_ not modelled 5.3 50 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:pepc22; PDBTitle: nmr structure of the membrane-binding domain of ctp2 phosphocholine cytidylyltransferase, 10 structures 66 d1xg0c_ not modelled 5.2 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 67 c2kluA_ not modelled 5.1 23 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 68 c2diiA_ not modelled 5.1 23 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 69 c1ifpA_ not modelled 5.1 32 PDB header:virus Chain: A: PDB Molecule:major coat protein assembly; PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly 70 d1sana_ not modelled 5.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 71 d1f99a_ not modelled 5.1 7 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0