Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	Y	H	I	P	G	V	L	S	P	Q	D	V	A	R	F	R	E	Q	L	E	Q	A	E	W	V	D	G	R	V	T	T	G	A	Q	G	A	Q	V	K	N	N	Q	Q	V	D	T	R	S	T	L	Y	A	A	L	Q	N	E	V
Secondary structure
SS confidence
Disorder		?					?																		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?					?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	N	A	V	N	Q	H	A	L	F	F	A	A	A	L	P	R	T	L	S	T	P	L	F	N	R	Y	Q	N	N	E	T	Y	G	F	H	V	D	G	A	V	R	S	H	P	Q	N	G	W	M	R	T	D	L	S	A	T	L	F	L
Secondary structure
SS confidence
Disorder																																?												?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	D	P	Q	S	Y	D	G	G	E	L	V	V	N	D	T	F	G	Q	H	R	V	K	L	P	A	G	D	L	V	L	Y	P	S	S	S	L	H	C	V	T	P	V	T	R	G	V	R	V	A	S	F	M	W	I	Q	S	M	I	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence		D	D	K	K	R	A	M	L	F	E	L	D	N	N	I	Q	S	L	K	S	R	Y	G	E	S	E	E	I	L	S	L	L	N	L	Y	H	N	L	L	R	E	W	S	E	I
Secondary structure
SS confidence
Disorder																						?	?	?	?		?																	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3dkq chain B Region: 2 - 225 Aligned: 200 Modelled: 212 Confidence: 100.0% Identity: 54% PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution Phyre2 PDB 2jij chain A Region: 2 - 176 Aligned: 157 Modelled: 175 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:prolyl-4 hydroxylase; PDBTitle: crystal structure of the apo form of chlamydomonas2 reinhardtii prolyl-4 hydroxylase type i Phyre2 PDB 3itq chain B Region: 2 - 176 Aligned: 153 Modelled: 166 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:prolyl 4-hydroxylase, alpha subunit domain protein; PDBTitle: crystal structure of a prolyl 4-hydroxylase from bacillus anthracis Phyre2 PDB 3oui chain A Region: 2 - 175 Aligned: 161 Modelled: 173 Confidence: 99.9% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: phd2-r717 with 40787422 Phyre2 PDB 2g19 chain A Region: 2 - 186 Aligned: 177 Modelled: 184 Confidence: 99.9% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: cellular oxygen sensing: crystal structure of hypoxia-2 inducible factor prolyl hydroxylase (phd2) Phyre2 PDB 3kt4 chain A Region: 3 - 175 Aligned: 164 Modelled: 172 Confidence: 99.6% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:pkhd-type hydroxylase tpa1; PDBTitle: crystal structure of tpa1 from saccharomyces cerevisiae, a2 component of the messenger ribonucleoprotein complex Phyre2 PDB 3gjb chain A Region: 2 - 173 Aligned: 170 Modelled: 172 Confidence: 99.0% Identity: 13% PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate Phyre2 PDB 3bvc chain A Region: 11 - 173 Aligned: 149 Modelled: 163 Confidence: 98.8% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ism_01780; PDBTitle: crystal structure of uncharacterized protein ism_01780 from2 roseovarius nubinhibens ism Phyre2 PDB 2fct chain A domain 1 Region: 2 - 173 Aligned: 168 Modelled: 172 Confidence: 98.7% Identity: 14% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 3emr chain A Region: 2 - 173 Aligned: 169 Modelled: 171 Confidence: 98.7% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens Phyre2 PDB 2fdi chain A domain 1 Region: 2 - 173 Aligned: 150 Modelled: 164 Confidence: 98.6% Identity: 19% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: AlkB-like Phyre2 PDB 3tht chain B Region: 2 - 173 Aligned: 146 Modelled: 159 Confidence: 98.6% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:alkylated dna repair protein alkb homolog 8; PDBTitle: crystal structure and rna binding properties of the rrm/alkb domains2 in human abh8, an enzyme catalyzing trna hypermodification, northeast3 structural genomics consortium target hr5601b Phyre2 PDB 2opw chain A Region: 2 - 173 Aligned: 169 Modelled: 170 Confidence: 98.6% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) Phyre2 PDB 3nnl chain B Region: 2 - 217 Aligned: 190 Modelled: 192 Confidence: 98.5% Identity: 17% PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) Phyre2 PDB 2a1x chain A domain 1 Region: 2 - 173 Aligned: 165 Modelled: 172 Confidence: 98.5% Identity: 16% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 2iuw chain A Region: 2 - 173 Aligned: 151 Modelled: 172 Confidence: 98.4% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:alkylated repair protein alkb homolog 3; PDBTitle: crystal structure of human abh3 in complex with iron ion2 and 2-oxoglutarate Phyre2 PDB 2iuw chain A domain 1 Region: 2 - 173 Aligned: 147 Modelled: 172 Confidence: 98.3% Identity: 18% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: AlkB-like Phyre2 PDB 2rds chain A Region: 2 - 173 Aligned: 172 Modelled: 172 Confidence: 98.3% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound Phyre2 PDB 3btz chain A Region: 2 - 173 Aligned: 155 Modelled: 171 Confidence: 98.0% Identity: 14% PDB header:oxidoreductase/dna Chain: A: PDB Molecule:alpha-ketoglutarate-dependent dioxygenase alkb homolog 2; PDBTitle: crystal structure of human abh2 cross-linked to dsdna Phyre2 PDB 1w9y chain A domain 1 Region: 53 - 173 Aligned: 104 Modelled: 107 Confidence: 96.8% Identity: 17% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 1 c3dkqB_ 2 c2jijA_ 3 c3itqB_ 4 c3ouiA_ 5 c2g19A_ 6 c3kt4A_ 7 c3gjbA_ 8 c3bvcA_ 9 d2fcta1 10 c3emrA_ 11 d2fdia1 12 c3thtB_ 13 c2opwA_ 14 c3nnlB_ 15 d2a1xa1 16 c2iuwA_ 17 d2iuwa1 18 c2rdsA_ 19 c3btzA_ 20 d1w9ya1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dkqB_ 100.0 54 PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution 2 c2jijA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:prolyl-4 hydroxylase; PDBTitle: crystal structure of the apo form of chlamydomonas2 reinhardtii prolyl-4 hydroxylase type i 3 c3itqB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:prolyl 4-hydroxylase, alpha subunit domain protein; PDBTitle: crystal structure of a prolyl 4-hydroxylase from bacillus anthracis 4 c3ouiA_ 99.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: phd2-r717 with 40787422 5 c2g19A_ 99.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: cellular oxygen sensing: crystal structure of hypoxia-2 inducible factor prolyl hydroxylase (phd2) 6 c3kt4A_ 99.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:pkhd-type hydroxylase tpa1; PDBTitle: crystal structure of tpa1 from saccharomyces cerevisiae, a2 component of the messenger ribonucleoprotein complex 7 c3gjbA_ 99.0 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate 8 c3bvcA_ 98.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ism_01780; PDBTitle: crystal structure of uncharacterized protein ism_01780 from2 roseovarius nubinhibens ism 9 d2fcta1 98.7 14 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 10 c3emrA_ 98.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens 11 d2fdia1 98.6 19 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:AlkB-like 12 c3thtB_ 98.6 15 PDB header:oxidoreductase Chain: B: PDB Molecule:alkylated dna repair protein alkb homolog 8; PDBTitle: crystal structure and rna binding properties of the rrm/alkb domains2 in human abh8, an enzyme catalyzing trna hypermodification, northeast3 structural genomics consortium target hr5601b 13 c2opwA_ 98.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 14 c3nnlB_ 98.5 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 15 d2a1xa1 98.5 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 16 c2iuwA_ 98.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:alkylated repair protein alkb homolog 3; PDBTitle: crystal structure of human abh3 in complex with iron ion2 and 2-oxoglutarate 17 d2iuwa1 98.3 18 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:AlkB-like 18 c2rdsA_ 98.3 10 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound 19 c3btzA_ 98.0 14 PDB header:oxidoreductase/dna Chain: A: PDB Molecule:alpha-ketoglutarate-dependent dioxygenase alkb homolog 2; PDBTitle: crystal structure of human abh2 cross-linked to dsdna 20 d1w9ya1 96.8 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 21 d1odma_ not modelled 96.1 18 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 22 d1dcsa_ not modelled 95.0 18 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 23 d1oiha_ not modelled 94.8 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 24 c3pl0B_ not modelled 94.7 37 PDB header:biosynthetic protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution 25 d1gp6a_ not modelled 94.5 19 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 26 c3on7C_ not modelled 93.7 17 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 27 c3ooxA_ not modelled 93.4 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 28 d1vrba1 not modelled 93.2 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 29 c3eatX_ not modelled 92.8 20 PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa 30 c3r1jB_ not modelled 91.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 31 c2dbiA_ not modelled 89.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ybiu; PDBTitle: crystal structure of a hypothetical protein jw0805 from2 escherichia coli 32 c3rcqA_ not modelled 88.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a 33 d2csga1 not modelled 88.1 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:YbiU-like 34 d1h2ka_ not modelled 87.3 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 35 c3ms5A_ not modelled 82.3 27 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) 36 c2xdvA_ not modelled 81.4 18 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 37 d1nx4a_ not modelled 70.5 19 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 38 c3uyjA_ not modelled 68.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 39 c3ht2A_ not modelled 66.7 14 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 40 c3al6A_ not modelled 66.4 22 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 41 d1yfua1 not modelled 60.4 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 42 d1otja_ not modelled 55.9 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 43 d3bb6a1 not modelled 55.6 12 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TehB-like 44 c2og5A_ not modelled 53.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 45 d2bnma2 not modelled 52.7 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 46 c3pvjB_ not modelled 49.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 47 d1y0za_ not modelled 47.2 24 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 48 d1sfna_ not modelled 47.1 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 49 d1jr7a_ not modelled 46.9 23 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 50 d1ds1a_ not modelled 46.8 30 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 51 c2bnoA_ not modelled 45.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 52 d1pzqa_ not modelled 44.4 32 Fold:Dimerisation interlock Superfamily:Docking domain A of the erythromycin polyketide synthase (DEBS) Family:Docking domain A of the erythromycin polyketide synthase (DEBS) 53 c3ibmB_ not modelled 43.4 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 54 c3rnsA_ not modelled 40.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 55 c3bcwB_ not modelled 38.4 27 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 56 c2pfwB_ not modelled 36.3 30 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 57 c3lwcA_ not modelled 35.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 58 c3kvaA_ not modelled 35.1 19 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 59 c3k3nA_ not modelled 34.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 60 c2i45C_ not modelled 32.9 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 61 c2fqpD_ not modelled 31.6 21 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 62 c2wbqA_ not modelled 30.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 63 d1o5ua_ not modelled 29.9 27 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 64 c3h7yA_ not modelled 29.9 9 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 65 c3fjsC_ not modelled 29.8 21 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 66 d1j58a_ not modelled 29.4 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 67 c3pu3A_ not modelled 29.0 14 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 68 c2q30C_ not modelled 28.7 22 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 69 c3i38E_ not modelled 28.3 20 PDB header:chaperone Chain: E: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 70 c3i38C_ not modelled 28.3 20 PDB header:chaperone Chain: C: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 71 c3i38A_ not modelled 28.1 20 PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 72 c3i38G_ not modelled 28.1 20 PDB header:chaperone Chain: G: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 73 d1dgwa_ not modelled 26.8 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 74 d1vj2a_ not modelled 26.0 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 75 c2yu1A_ not modelled 25.5 33 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 76 d1v70a_ not modelled 25.1 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 77 c3k2oB_ not modelled 24.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 78 c3i38L_ not modelled 24.5 19 PDB header:chaperone Chain: L: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 79 d1uija1 not modelled 24.0 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 80 c3kv4A_ not modelled 23.7 19 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 81 d1yhfa1 not modelled 22.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 82 c3kv5D_ not modelled 22.7 19 PDB header:h3k4me3 binding protein, transferase Chain: D: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: structure of kiaa1718, human jumonji demethylase, in complex2 with n-oxalylglycine 83 c3i38D_ not modelled 21.3 20 PDB header:chaperone Chain: D: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 84 c2oziA_ not modelled 20.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 85 c3i38J_ not modelled 20.8 20 PDB header:chaperone Chain: J: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 86 d3dl3a1 not modelled 20.3 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TehB-like 87 c2ozjB_ not modelled 19.8 21 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 88 c3i38H_ not modelled 19.6 19 PDB header:chaperone Chain: H: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 89 d1j3pa_ not modelled 19.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 90 c3d89A_ not modelled 19.2 7 PDB header:electron transport Chain: A: PDB Molecule:rieske domain-containing protein; PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus 91 c3i38K_ not modelled 18.2 20 PDB header:chaperone Chain: K: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 92 d1jm1a_ not modelled 17.7 16 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 93 d1xjva1 not modelled 17.2 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 94 c2opkC_ not modelled 17.2 13 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 95 c3i38B_ not modelled 17.2 19 PDB header:chaperone Chain: B: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 96 c3d82A_ not modelled 16.9 20 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 97 d1rc6a_ not modelled 16.3 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 98 d1zrra1 not modelled 15.7 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 99 d1vm9a_ not modelled 14.9 15 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0