Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	M	F	A	L	I	L	V	I	A	T	L	V	T	G	I	L	W	C	V	D	K	F	F	F	A	P	K	R	R	E	R	Q	A	A	A	Q	A	A	A	G	D	S	L	D	K	A	T	L	K	K	V	A	P	K	P	G	W
Secondary structure
SS confidence
Disorder		?	?	?	?																										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	E	T	G	A	S	V	F	P	V	L	A	I	V	L	I	V	R	S	F	I	Y	E	P	F	Q	I	P	S	G	S	M	M	P	T	L	L	I	G	D	F	I	L	V	E	K	F	A	Y	G	I	K	D	P	I	Y	Q	K	T	L
Secondary structure
SS confidence
Disorder																																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	E	T	G	H	P	K	R	G	D	I	V	V	F	K	Y	P	E	D	P	K	L	D	Y	I	K	R	A	V	G	L	P	G	D	K	V	T	Y	D	P	V	S	K	E	L	T	I	Q	P	G	C	S	S	G	Q	A	C	E	N	A
Secondary structure
SS confidence
Disorder			?																																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	P	V	T	Y	S	N	V	E	P	S	D	F	V	Q	T	F	S	R	R	N	G	G	E	A	T	S	G	F	F	E	V	P	K	N	E	T	K	E	N	G	I	R	L	S	E	R	K	E	T	L	G	D	V	T	H	R	I	L	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	P	I	A	Q	D	Q	V	G	M	Y	Y	Q	Q	P	G	Q	Q	L	A	T	W	I	V	P	P	G	Q	Y	F	M	M	G	D	N	R	D	N	S	A	D	S	R	Y	W	G	F	V	P	E	A	N	L	V	G	R	A	T	A	I
Secondary structure
SS confidence
Disorder						?					?			?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Sequence		W	M	S	F	D	K	Q	E	G	E	W	P	T	G	L	R	L	S	R	I	G	G	I	H
Secondary structure
SS confidence
Disorder								?	?	?	?								?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1b12 chain A Region: 78 - 324 Aligned: 239 Modelled: 247 Confidence: 100.0% Identity: 100% Fold: LexA/Signal peptidase Superfamily: LexA/Signal peptidase Family: Type 1 signal peptidase Phyre2 PDB 1f39 chain A Region: 84 - 303 Aligned: 84 Modelled: 90 Confidence: 97.4% Identity: 29% Fold: LexA/Signal peptidase Superfamily: LexA/Signal peptidase Family: LexA-related Phyre2 PDB 1umu chain A Region: 84 - 148 Aligned: 46 Modelled: 49 Confidence: 97.0% Identity: 20% Fold: LexA/Signal peptidase Superfamily: LexA/Signal peptidase Family: LexA-related Phyre2 PDB 1jhh chain B Region: 84 - 164 Aligned: 62 Modelled: 65 Confidence: 96.7% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:lexa repressor; PDBTitle: lexa s119a mutant Phyre2 PDB 1jhf chain A domain 2 Region: 84 - 162 Aligned: 59 Modelled: 63 Confidence: 96.6% Identity: 31% Fold: LexA/Signal peptidase Superfamily: LexA/Signal peptidase Family: LexA-related Phyre2 PDB 3k2z chain A Region: 84 - 153 Aligned: 51 Modelled: 54 Confidence: 96.6% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima Phyre2 PDB 2hnf chain A Region: 84 - 153 Aligned: 52 Modelled: 54 Confidence: 96.4% Identity: 19% PDB header:viral protein Chain: A: PDB Molecule:repressor protein ci101-229dm-k192a; PDBTitle: structure of a hyper-cleavable monomeric fragment of phage2 lambda repressor containing the cleavage site region Phyre2 PDB 3bdn chain B Region: 84 - 162 Aligned: 60 Modelled: 63 Confidence: 94.9% Identity: 23% PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor Phyre2 PDB 2fjr chain B Region: 90 - 162 Aligned: 54 Modelled: 57 Confidence: 93.7% Identity: 13% PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 Phyre2 PDB 2io8 chain A domain 2 Region: 73 - 162 Aligned: 90 Modelled: 90 Confidence: 72.1% Identity: 13% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: CHAP domain Phyre2 PDB 1hr0 chain W Region: 96 - 132 Aligned: 22 Modelled: 22 Confidence: 65.1% Identity: 55% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3i4o chain A Region: 96 - 132 Aligned: 22 Modelled: 22 Confidence: 57.8% Identity: 45% PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis Phyre2 PDB 1ah9 chain A Region: 96 - 132 Aligned: 22 Modelled: 22 Confidence: 53.6% Identity: 45% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2oqk chain A Region: 96 - 132 Aligned: 22 Modelled: 22 Confidence: 51.5% Identity: 32% PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a Phyre2 PDB 1jt8 chain A Region: 96 - 132 Aligned: 22 Modelled: 22 Confidence: 44.8% Identity: 23% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2nqq chain A Region: 83 - 133 Aligned: 46 Modelled: 46 Confidence: 39.0% Identity: 17% PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q Phyre2 PDB 1zvp chain A domain 1 Region: 91 - 133 Aligned: 42 Modelled: 43 Confidence: 38.5% Identity: 21% Fold: Ferredoxin-like Superfamily: ACT-like Family: VC0802-like Phyre2 PDB 1g2o chain A Region: 89 - 158 Aligned: 70 Modelled: 70 Confidence: 34.1% Identity: 19% Fold: Phosphorylase/hydrolase-like Superfamily: Purine and uridine phosphorylases Family: Purine and uridine phosphorylases Phyre2 PDB 2dgy chain A Region: 96 - 132 Aligned: 23 Modelled: 23 Confidence: 31.5% Identity: 43% PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein Phyre2 PDB 2ioa chain A Region: 73 - 162 Aligned: 90 Modelled: 90 Confidence: 30.3% Identity: 14% PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor Phyre2 1 d1b12a_ 2 d1f39a_ 3 d1umua_ 4 c1jhhB_ 5 d1jhfa2 6 c3k2zA_ 7 c2hnfA_ 8 c3bdnB_ 9 c2fjrB_ 10 d2io8a2 11 d1hr0w_ 12 c3i4oA_ 13 d1ah9a_ 14 c2oqkA_ 15 d1jt8a_ 16 c2nqqA_ 17 d1zvpa1 18 d1g2oa_ 19 c2dgyA_ 20 c2ioaA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1b12a_ 100.0 100 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:Type 1 signal peptidase 2 d1f39a_ 97.4 29 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:LexA-related 3 d1umua_ 97.0 20 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:LexA-related 4 c1jhhB_ 96.7 23 PDB header:hydrolase Chain: B: PDB Molecule:lexa repressor; PDBTitle: lexa s119a mutant 5 d1jhfa2 96.6 31 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:LexA-related 6 c3k2zA_ 96.6 20 PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima 7 c2hnfA_ 96.4 19 PDB header:viral protein Chain: A: PDB Molecule:repressor protein ci101-229dm-k192a; PDBTitle: structure of a hyper-cleavable monomeric fragment of phage2 lambda repressor containing the cleavage site region 8 c3bdnB_ 94.9 23 PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor 9 c2fjrB_ 93.7 13 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 10 d2io8a2 72.1 13 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 11 d1hr0w_ 65.1 55 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 12 c3i4oA_ 57.8 45 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 13 d1ah9a_ 53.6 45 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 c2oqkA_ 51.5 32 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 15 d1jt8a_ 44.8 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 16 c2nqqA_ 39.0 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 17 d1zvpa1 38.5 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 18 d1g2oa_ 34.1 19 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 19 c2dgyA_ 31.5 43 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 20 c2ioaA_ 30.3 14 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 21 d1wu2a2 not modelled 29.8 22 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 22 c2k3aA_ not modelled 28.4 19 PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 23 d2nqra2 not modelled 27.4 17 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 24 c1wu2B_ not modelled 26.6 22 PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3 25 c3qpbB_ not modelled 24.7 14 PDB header:transferase Chain: B: PDB Molecule:uridine phosphorylase; PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily 26 c3up6A_ not modelled 24.1 36 PDB header:cell adhesion Chain: A: PDB Molecule:hypothetical protein bacova_04078; PDBTitle: crystal structure of a hypothetical protein bacova_04078 [bacteroides2 ovatus atcc 8483] (zp_02067074.1, sp17169a, jcsg 417104) from3 bacteroides ovatus atcc 8483 at 2.80 a resolution 27 d1je0a_ not modelled 23.8 27 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 28 c3khsB_ not modelled 23.3 30 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 29 c2k8iA_ not modelled 23.3 21 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 30 d1d7qa_ not modelled 23.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 31 d1rxya_ not modelled 22.9 19 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 32 d1gvha2 not modelled 22.8 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 33 c2pmzQ_ not modelled 22.7 36 PDB header:translation, transferase Chain: Q: PDB Molecule:dna-directed rna polymerase subunit a; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 34 d1uz5a2 not modelled 22.4 22 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 35 d2ftxa1 not modelled 22.3 80 Fold:Kinetochore globular domain-like Superfamily:Kinetochore globular domain Family:Spc25-like 36 c1tcvB_ not modelled 21.5 30 PDB header:transferase Chain: B: PDB Molecule:purine-nucleoside phosphorylase; PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate 37 d1jnpa_ not modelled 20.7 26 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 38 d1k9sa_ not modelled 20.6 14 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 39 d1qe5a_ not modelled 20.4 20 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 40 c1ar1B_ not modelled 20.4 21 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 41 c1qleB_ not modelled 20.4 21 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 42 c1m57H_ not modelled 20.2 16 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 43 c3tl6B_ not modelled 19.9 24 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica 44 c1qcrD_ not modelled 19.7 10 PDB header: PDB COMPND: 45 c3ggsA_ not modelled 19.1 29 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine 46 d1jsga_ not modelled 19.0 28 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 47 d1ub4a_ not modelled 18.9 23 Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Kid/PemK 48 d1a1xa_ not modelled 18.9 17 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 49 d3bgsa1 not modelled 18.7 19 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 50 c3cgnA_ not modelled 18.0 22 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 51 d1aono_ not modelled 17.8 23 Fold:GroES-like Superfamily:GroES-like Family:GroES 52 d1njjb1 not modelled 17.5 31 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 53 d1cb0a_ not modelled 17.0 28 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 54 c2p4sA_ not modelled 17.0 25 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: structure of purine nucleoside phosphorylase from anopheles gambiae in2 complex with dadme-immh 55 d1t8sa_ not modelled 16.5 31 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 56 c1wtaA_ not modelled 16.0 33 PDB header:transferase Chain: A: PDB Molecule:5'-methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum2 pernix (r32 form) 57 c3ozbF_ not modelled 16.0 10 PDB header:transferase Chain: F: PDB Molecule:methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-methylthioinosine phosphorylase from2 psedomonas aeruginosa in complex with hypoxanthine 58 c3nx6A_ not modelled 15.7 25 PDB header:chaperone Chain: A: PDB Molecule:10kda chaperonin; PDBTitle: crystal structure of co-chaperonin, groes (xoo4289) from xanthomonas2 oryzae pv. oryzae kacc10331 59 d3btaa2 not modelled 15.4 24 Fold:beta-Trefoil Superfamily:STI-like Family:Clostridium neurotoxins, C-terminal domain 60 c1z34A_ not modelled 15.3 10 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine 61 d2qmma1 not modelled 15.1 21 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 62 d1knwa1 not modelled 14.8 25 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 63 d1uwva1 not modelled 14.7 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 64 d3pnpa_ not modelled 14.4 26 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 65 d1ybfa_ not modelled 14.0 22 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 66 c2k1gA_ not modelled 13.7 25 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 67 d3dtub2 not modelled 13.2 16 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 68 c2uwqA_ not modelled 13.0 67 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-stimulating of p53 protein 2; PDBTitle: solution structure of aspp2 n-terminus 69 c1uz5A_ not modelled 12.9 22 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 70 c3mb8A_ not modelled 12.6 32 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from toxoplasma2 gondii in complex with immucillin-h 71 c2vpmB_ not modelled 12.6 12 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 72 d2bgwa2 not modelled 12.5 21 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XPF/Rad1/Mus81 nuclease 73 d1xpna_ not modelled 12.2 7 Fold:Prealbumin-like Superfamily:Hypothetical protein PA1324 Family:Hypothetical protein PA1324 74 d3ehbb2 not modelled 12.1 21 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 75 c1yr3A_ not modelled 12.1 25 PDB header:transferase Chain: A: PDB Molecule:xanthosine phosphorylase; PDBTitle: escherichia coli purine nucleoside phosphorylase ii, the2 product of the xapa gene 76 d1vhwa_ not modelled 12.1 10 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 77 d1qcsa1 not modelled 11.9 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 78 d1kt0a2 not modelled 11.8 29 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 79 d1j23a_ not modelled 11.8 50 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XPF/Rad1/Mus81 nuclease 80 d2cnda1 not modelled 11.8 18 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 81 d1vnba_ not modelled 11.8 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 82 d2gyci1 not modelled 11.6 13 Fold:Ribosomal protein L14 Superfamily:Ribosomal protein L14 Family:Ribosomal protein L14 83 d2nn6g1 not modelled 11.6 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 84 d1fftb2 not modelled 11.5 13 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 85 d1yeza1 not modelled 10.8 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 86 d7odca1 not modelled 10.6 31 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 87 c3lhnB_ not modelled 10.6 41 PDB header:lipid binding protein Chain: B: PDB Molecule:lipoprotein; PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution 88 c2kieA_ not modelled 10.5 58 PDB header:hydrolase Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: a ph domain within ocrl bridges clathrin mediated membrane2 trafficking to phosphoinositide metabolis 89 d2cr9a1 not modelled 10.5 29 Fold:WGR domain-like Superfamily:WGR domain-like Family:WGR domain 90 d1odka_ not modelled 10.4 19 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 91 d2ja9a1 not modelled 10.4 38 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 92 d1vmka_ not modelled 10.3 23 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 93 c3dinD_ not modelled 10.2 23 PDB header:membrane protein, protein transport Chain: D: PDB Molecule:preprotein translocase subunit sece; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 94 c2e6zA_ not modelled 10.2 31 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 95 d1yvca1 not modelled 10.1 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 96 d2ac7a1 not modelled 10.1 14 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 97 c2eocA_ not modelled 10.0 43 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 3; PDBTitle: solution structure of the wgr domain from human poly [adp-2 ribose] polymerase-3 98 d1jzaa_ not modelled 9.7 35 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 99 d1p3ha_ not modelled 9.7 20 Fold:GroES-like Superfamily:GroES-like Family:GroES

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0