Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	I	R	G	I	H	N	L	S	Q	A	P	Q	E	G	C	V	L	T	I	G	N	F	D	G	V	H	R	G	H	R	A	L	L	Q	G	L	Q	E	E	G	R	K	R	N	L	P	V	M	V	M	L	F	E	P	Q	P	L
Secondary structure
SS confidence
Disorder		?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	L	F	A	T	D	K	A	P	A	R	L	T	R	L	R	E	K	L	R	Y	L	A	E	C	G	V	D	Y	V	L	C	V	R	F	D	R	R	F	A	A	L	T	A	Q	N	F	I	S	D	L	L	V	K	H	L	R	V	K	F
Secondary structure
SS confidence
Disorder								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	A	V	G	D	D	F	R	F	G	A	G	R	E	G	D	F	L	L	L	Q	K	A	G	M	E	Y	G	F	D	I	T	S	T	Q	T	F	C	E	G	G	V	R	I	S	S	T	A	V	R	Q	A	L	A	D	D	N	L	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	E	S	L	L	G	H	P	F	A	I	S	G	R	V	V	H	G	D	E	L	G	R	T	I	G	F	P	T	A	N	V	P	L	R	R	Q	V	S	P	V	K	G	V	Y	A	V	E	V	L	G	L	G	E	K	P	L	P	G	V
Secondary structure
SS confidence
Disorder																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	N	I	G	T	R	P	T	V	A	G	I	R	Q	Q	L	E	V	H	L	L	D	V	A	M	D	L	Y	G	R	H	I	Q	V	V	L	R	K	K	I	R	N	E	Q	R	F	A	S	L	D	E	L	K	A	Q	I	A	R	D	E
Secondary structure
SS confidence
Disorder																																														?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.
Sequence		L	T	A	R	E	F	F	G	L	T	K	P	A
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2x0k chain B Region: 1 - 310 Aligned: 308 Modelled: 310 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes Phyre2 PDB 3op1 chain A Region: 4 - 306 Aligned: 287 Modelled: 296 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae Phyre2 PDB 1t6z chain B Region: 19 - 308 Aligned: 261 Modelled: 290 Confidence: 100.0% Identity: 33% PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 Phyre2 PDB 1nb9 chain A Region: 187 - 310 Aligned: 124 Modelled: 124 Confidence: 100.0% Identity: 27% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin kinase-like Family: ATP-dependent riboflavin kinase-like Phyre2 PDB 1n08 chain A Region: 187 - 309 Aligned: 122 Modelled: 123 Confidence: 100.0% Identity: 30% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin kinase-like Family: ATP-dependent riboflavin kinase-like Phyre2 PDB 3bnw chain A Region: 187 - 309 Aligned: 117 Modelled: 123 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase, putative; PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei Phyre2 PDB 1mrz chain A domain 1 Region: 189 - 308 Aligned: 100 Modelled: 120 Confidence: 100.0% Identity: 43% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin kinase-like Family: ATP-dependent riboflavin kinase-like Phyre2 PDB 1mrz chain A domain 2 Region: 19 - 187 Aligned: 157 Modelled: 169 Confidence: 100.0% Identity: 27% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 3guz chain B Region: 1 - 155 Aligned: 146 Modelled: 155 Confidence: 99.9% Identity: 23% PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's Phyre2 PDB 3glv chain B Region: 16 - 160 Aligned: 121 Modelled: 145 Confidence: 99.8% Identity: 19% PDB header:biosynthetic protein Chain: B: PDB Molecule:lipopolysaccharide core biosynthesis protein; PDBTitle: crystal structure of the lipopolysaccharide core biosynthesis protein2 from thermoplasma volcanium gss1 Phyre2 PDB 1coz chain A Region: 17 - 173 Aligned: 125 Modelled: 146 Confidence: 99.7% Identity: 20% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Cytidylyltransferase Phyre2 PDB 1lw7 chain A Region: 15 - 198 Aligned: 177 Modelled: 184 Confidence: 99.7% Identity: 10% PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae Phyre2 PDB 3uk2 chain B Region: 1 - 184 Aligned: 174 Modelled: 184 Confidence: 99.7% Identity: 21% PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: the structure of pantothenate synthetase from burkholderia2 thailandensis Phyre2 PDB 2ejc chain A Region: 1 - 184 Aligned: 170 Modelled: 184 Confidence: 99.6% Identity: 22% PDB header:ligase Chain: A: PDB Molecule:pantoate--beta-alanine ligase; PDBTitle: crystal structure of pantoate--beta-alanine ligase (panc)2 from thermotoga maritima Phyre2 PDB 1v8f chain A Region: 1 - 184 Aligned: 177 Modelled: 184 Confidence: 99.6% Identity: 23% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) Phyre2 PDB 1iho chain A Region: 1 - 184 Aligned: 174 Modelled: 184 Confidence: 99.6% Identity: 24% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) Phyre2 PDB 3h05 chain A Region: 16 - 177 Aligned: 137 Modelled: 162 Confidence: 99.6% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vpa0413; PDBTitle: the crystal structure of a putative nicotinate-nucleotide2 adenylyltransferase from vibrio parahaemolyticus Phyre2 PDB 1lw7 chain A domain 1 Region: 15 - 175 Aligned: 156 Modelled: 161 Confidence: 99.6% Identity: 10% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 3n8h chain A Region: 1 - 184 Aligned: 174 Modelled: 183 Confidence: 99.6% Identity: 19% PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine ligase from francisella2 tularensis Phyre2 PDB 3e27 chain B Region: 16 - 177 Aligned: 151 Modelled: 162 Confidence: 99.5% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:nicotinate (nicotinamide) nucleotide PDBTitle: nicotinic acid mononucleotide (namn) adenylyltransferase2 from bacillus anthracis: product complex Phyre2 1 c2x0kB_ 2 c3op1A_ 3 c1t6zB_ 4 d1nb9a_ 5 d1n08a_ 6 c3bnwA_ 7 d1mrza1 8 d1mrza2 9 c3guzB_ 10 c3glvB_ 11 d1coza_ 12 c1lw7A_ 13 c3uk2B_ 14 c2ejcA_ 15 d1v8fa_ 16 d1ihoa_ 17 c3h05A_ 18 d1lw7a1 19 c3n8hA_ 20 c3e27B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2x0kB_ 100.0 30 PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes 2 c3op1A_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 3 c1t6zB_ 100.0 33 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 4 d1nb9a_ 100.0 27 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:ATP-dependent riboflavin kinase-like 5 d1n08a_ 100.0 30 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:ATP-dependent riboflavin kinase-like 6 c3bnwA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase, putative; PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei 7 d1mrza1 100.0 43 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:ATP-dependent riboflavin kinase-like 8 d1mrza2 100.0 27 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 9 c3guzB_ 99.9 23 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's 10 c3glvB_ 99.8 19 PDB header:biosynthetic protein Chain: B: PDB Molecule:lipopolysaccharide core biosynthesis protein; PDBTitle: crystal structure of the lipopolysaccharide core biosynthesis protein2 from thermoplasma volcanium gss1 11 d1coza_ 99.7 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Cytidylyltransferase 12 c1lw7A_ 99.7 10 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae 13 c3uk2B_ 99.7 21 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: the structure of pantothenate synthetase from burkholderia2 thailandensis 14 c2ejcA_ 99.6 22 PDB header:ligase Chain: A: PDB Molecule:pantoate--beta-alanine ligase; PDBTitle: crystal structure of pantoate--beta-alanine ligase (panc)2 from thermotoga maritima 15 d1v8fa_ 99.6 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 16 d1ihoa_ 99.6 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 17 c3h05A_ 99.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vpa0413; PDBTitle: the crystal structure of a putative nicotinate-nucleotide2 adenylyltransferase from vibrio parahaemolyticus 18 d1lw7a1 99.6 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 19 c3n8hA_ 99.6 19 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine ligase from francisella2 tularensis 20 c3e27B_ 99.5 15 PDB header:transferase Chain: B: PDB Molecule:nicotinate (nicotinamide) nucleotide PDBTitle: nicotinic acid mononucleotide (namn) adenylyltransferase2 from bacillus anthracis: product complex 21 c3elbA_ not modelled 99.5 19 PDB header:transferase Chain: A: PDB Molecule:ethanolamine-phosphate cytidylyltransferase; PDBTitle: human ctp: phosphoethanolamine cytidylyltransferase in complex with2 cmp 22 c3ag5A_ not modelled 99.5 19 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantothenate synthetase from staphylococcus2 aureus 23 c2h29A_ not modelled 99.5 15 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from staphylococcus aureus: product3 bound form 1 24 c3innB_ not modelled 99.5 25 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine-ligase in complex2 with atp at low occupancy at 2.1 a resolution 25 c2b7lD_ not modelled 99.5 23 PDB header:transferase Chain: D: PDB Molecule:glycerol-3-phosphate cytidylyltransferase; PDBTitle: crystal structure of ctp:glycerol-3-phosphate2 cytidylyltransferase from staphylococcus aureus 26 c3nv7A_ not modelled 99.5 24 PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of h.pylori phosphopantetheine adenylyltransferase2 mutant i4v/n76y 27 c3mxtA_ not modelled 99.4 20 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine ligase from campylobacter2 jejuni 28 d1f9aa_ not modelled 99.4 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 29 d1qjca_ not modelled 99.4 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 30 d2a84a1 not modelled 99.4 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 31 d1kr2a_ not modelled 99.4 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 32 d1nuua_ not modelled 99.4 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 33 d1tfua_ not modelled 99.3 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 34 d1o6ba_ not modelled 99.3 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 35 d1ej2a_ not modelled 99.3 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 36 c3ikzA_ not modelled 99.2 20 PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei 37 c3hl4B_ not modelled 99.2 27 PDB header:transferase Chain: B: PDB Molecule:choline-phosphate cytidylyltransferase a; PDBTitle: crystal structure of a mammalian ctp:phosphocholine2 cytidylyltransferase with cdp-choline 38 d1vlha_ not modelled 99.1 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 39 c3nd5D_ not modelled 98.9 20 PDB header:transferase Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase (ppat)2 from enterococcus faecalis 40 d1od6a_ not modelled 98.9 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 41 c2r5wA_ not modelled 98.9 14 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 42 c2qjoB_ not modelled 98.8 16 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 43 c1yunB_ not modelled 98.8 20 PDB header:transferase Chain: B: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from pseudomonas aeruginosa 44 c3f3mA_ not modelled 98.7 15 PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: six crystal structures of two phosphopantetheine2 adenylyltransferases reveal an alternative ligand binding3 mode and an associated structural change 45 d1kama_ not modelled 98.7 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 46 d1k4ma_ not modelled 98.6 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 47 c3gmiA_ not modelled 98.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0348 protein mj0951; PDBTitle: crystal structure of a protein of unknown function from2 methanocaldococcus jannaschii 48 c3do8B_ not modelled 98.6 14 PDB header:transferase Chain: B: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: the crystal structure of the protein with unknown function2 from archaeoglobus fulgidus 49 d1jhda2 not modelled 97.9 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 50 c2qjfB_ not modelled 97.4 21 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'- PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1 51 c1xnjB_ not modelled 97.3 18 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1 52 d1x6va2 not modelled 97.3 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 53 d1g8fa2 not modelled 96.7 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 54 c1r6xA_ not modelled 96.7 17 PDB header:transferase Chain: A: PDB Molecule:atp:sulfate adenylyltransferase; PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate 55 c1jhdA_ not modelled 96.5 20 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of bacterial atp sulfurylase from the2 riftia pachyptila symbiont 56 d1v47a2 not modelled 96.3 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 57 d1m8pa2 not modelled 96.1 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 58 c1g8gB_ not modelled 96.0 21 PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: atp sulfurylase from s. cerevisiae: the binary product complex with2 aps 59 c1m8pB_ not modelled 95.5 20 PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state 60 c3cr8C_ not modelled 94.5 11 PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans 61 c2gksB_ not modelled 94.4 16 PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile 62 c1v47B_ not modelled 92.1 18 PDB header:transferase Chain: B: PDB Molecule:atp sulfurylase; PDBTitle: crystal structure of atp sulfurylase from thermus2 thermophillus hb8 in complex with aps 63 c3ih5A_ not modelled 79.9 20 PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron 64 c1dkrB_ not modelled 68.8 10 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 65 d2g2ca1 not modelled 64.2 22 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 66 c3bdkB_ not modelled 60.2 14 PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue 67 c3lx4B_ not modelled 57.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg) 68 c3dahB_ not modelled 55.9 12 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei 69 d1jvna1 not modelled 55.8 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 70 d2nqra3 not modelled 53.9 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 71 c3rfqC_ not modelled 53.3 22 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 72 c2is8A_ not modelled 50.2 16 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 73 c1cvrA_ not modelled 50.0 15 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:gingipain r; PDBTitle: crystal structure of the arg specific cysteine proteinase gingipain r2 (rgpb) 74 d2h85a2 not modelled 49.5 15 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 75 c3jxeB_ not modelled 46.2 10 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp 76 c2ip1A_ not modelled 46.1 16 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase 77 c3eb2A_ not modelled 44.8 14 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution 78 c3kbqA_ not modelled 44.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 79 c1uz5A_ not modelled 42.6 17 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 80 c3focB_ not modelled 41.6 14 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia 81 c2fu3A_ not modelled 40.9 21 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 82 d2ozka2 not modelled 40.5 23 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 83 c3hv0A_ not modelled 40.2 14 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum 84 d2choa2 not modelled 40.0 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 85 c1jvnB_ not modelled 39.6 12 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 86 d1xxxa1 not modelled 39.1 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 87 d1np7a2 not modelled 39.0 11 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 88 c2hqxB_ not modelled 38.4 11 PDB header:transcription Chain: B: PDB Molecule:p100 co-activator tudor domain; PDBTitle: crystal structure of human p100 tudor domain conserved2 region 89 d2hqxa1 not modelled 38.4 11 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 90 c1gcyA_ not modelled 37.5 16 PDB header:hydrolase Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase; PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase 91 c2r8wB_ not modelled 37.4 11 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 92 d1y5ea1 not modelled 36.8 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 93 d1xi8a3 not modelled 36.7 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 94 d1mkza_ not modelled 35.0 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 95 c2zskA_ not modelled 34.8 13 PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 96 d2gtia2 not modelled 34.7 21 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 97 c2g4rB_ not modelled 34.5 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 98 d1o5ka_ not modelled 34.2 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 99 c2eqkA_ not modelled 34.0 19 PDB header:transcription Chain: A: PDB Molecule:tudor domain-containing protein 4; PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4 100 c2ya0A_ not modelled 33.6 21 PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua 101 c2xrzA_ not modelled 33.6 17 PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion 102 d1uz5a3 not modelled 33.3 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 103 d1owla2 not modelled 33.1 15 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 104 c2el7A_ not modelled 32.3 15 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from thermus2 thermophilus 105 d3clsd1 not modelled 31.9 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 106 c2rfgB_ not modelled 31.6 16 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution 107 c2qlcC_ not modelled 31.4 12 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein radc homolog; PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls 108 d1hf2a2 not modelled 31.3 20 Fold:Cell-division inhibitor MinC, N-terminal domain Superfamily:Cell-division inhibitor MinC, N-terminal domain Family:Cell-division inhibitor MinC, N-terminal domain 109 c2nqqA_ not modelled 31.3 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 110 d1lwha2 not modelled 31.2 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 111 d1wu2a3 not modelled 31.2 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 112 d2f7wa1 not modelled 30.4 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 113 c3i05B_ not modelled 30.1 13 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from trypanosoma brucei 114 c1ehaA_ not modelled 29.7 24 PDB header:hydrolase Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase; PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus 115 d1r6ta2 not modelled 29.6 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 116 c3cvyA_ not modelled 29.6 12 PDB header:lyase/dna Chain: A: PDB Molecule:re11660p; PDBTitle: drosophila melanogaster (6-4) photolyase bound to repaired2 ds dna 117 c1wu2B_ not modelled 29.5 15 PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3 118 c3zt5D_ not modelled 29.5 18 PDB header:hydrolase Chain: D: PDB Molecule:putative glucanohydrolase pep1a; PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound 119 c2gtiA_ not modelled 29.4 16 PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: mutation of mhv coronavirus non-structural protein nsp15 (f307l) 120 c2by0A_ not modelled 29.2 28 PDB header:hydrolase Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase; PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0