Email l.a.kelley@imperial.ac.uk Description P06961 Date Thu Jan 5 10:59:31 GMT 2012 Unique Job ID 932a8cb9bad437bd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1miyB_ 100.0 26 PDB header:translation, transferase Chain: B: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp 2 c1vfgB_ 100.0 24 PDB header:transferase/rna Chain: B: PDB Molecule:poly a polymerase; PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog 3 c3h37B_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein; PDBTitle: the structure of cca-adding enzyme apo form i 4 c3aqnA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:poly(a) polymerase; PDBTitle: complex structure of bacterial protein (apo form ii) 5 c1ou5A_ 100.0 25 PDB header:translation, transferase Chain: A: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of human cca-adding enzyme 6 d1miwa1 100.0 22 Fold:Poly A polymerase C-terminal region-like Superfamily:Poly A polymerase C-terminal region-like Family:Poly A polymerase C-terminal region-like 7 d1miwa2 100.0 36 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 8 d1vfga2 100.0 38 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 9 d1ou5a2 100.0 29 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 10 d1vfga1 100.0 18 Fold:Poly A polymerase C-terminal region-like Superfamily:Poly A polymerase C-terminal region-like Family:Poly A polymerase C-terminal region-like 11 d1ou5a1 99.9 23 Fold:Poly A polymerase C-terminal region-like Superfamily:Poly A polymerase C-terminal region-like Family:Poly A polymerase C-terminal region-like 12 d2qgsa1 97.3 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 13 d2pq7a1 97.2 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 14 d3djba1 96.6 22 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 15 d3b57a1 95.5 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 16 c3m5fA_ 94.4 12 PDB header:hydrolase Chain: A: PDB Molecule:metal dependent phosphohydrolase; PDBTitle: structure of mj0384, a cas3 protein from methanocaldococcus jannaschii 17 d3dtoa1 94.3 18 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 18 c2la3A_ 93.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain 19 d1u6za1 91.8 16 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:Ppx associated domain 20 d2pjqa1 91.7 14 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 21 d2fcla1 not modelled 91.4 19 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:TM1012-like 22 c2q14A_ not modelled 90.9 19 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase; PDBTitle: crystal structure of phosphohydrolase (bt4208) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution 23 c2o08B_ not modelled 90.7 28 PDB header:hydrolase Chain: B: PDB Molecule:bh1327 protein; PDBTitle: crystal structure of a putative hd superfamily hydrolase (bh1327) from2 bacillus halodurans at 1.90 a resolution 24 c3ccgA_ not modelled 88.9 32 PDB header:hydrolase Chain: A: PDB Molecule:hd superfamily hydrolase; PDBTitle: crystal structure of predicted hd superfamily hydrolase involved in2 nad metabolism (np_347894.1) from clostridium acetobutylicum at 1.503 a resolution 25 c3skdA_ not modelled 87.7 18 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein tthb187; PDBTitle: crystal structure of the thermus thermophilus cas3 hd domain in the2 presence of ni2+ 26 c3u1nC_ not modelled 86.6 25 PDB header:hydrolase Chain: C: PDB Molecule:sam domain and hd domain-containing protein 1; PDBTitle: structure of the catalytic core of human samhd1 27 c2ogiA_ not modelled 85.9 28 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein sag1661; PDBTitle: crystal structure of a putative metal dependent phosphohydrolase2 (sag1661) from streptococcus agalactiae serogroup v at 1.85 a3 resolution 28 c3gw7A_ not modelled 85.5 14 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein yedj; PDBTitle: crystal structure of a metal-dependent phosphohydrolase2 with conserved hd domain (yedj) from escherichia coli in3 complex with nickel ions. northeast structural genomics4 consortium target er63 29 c2floA_ not modelled 84.9 15 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7 30 d2o6ia1 not modelled 82.9 23 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 31 c2o6iA_ not modelled 82.9 23 PDB header:hydrolase Chain: A: PDB Molecule:hd domain protein; PDBTitle: structure of an enterococcus faecalis hd domain phosphohydrolase 32 d2gz4a1 not modelled 70.6 12 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 33 c3kq5A_ not modelled 66.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical cytosolic protein; PDBTitle: crystal structure of an uncharacterized protein from coxiella burnetii 34 c3hi0B_ not modelled 61.4 10 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 35 c2dqbB_ not modelled 61.3 22 PDB header:hydrolase, dna binding protein Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative; PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase 36 c2pgsA_ not modelled 54.9 29 PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyguanosinetriphosphate triphosphohydrolase; PDBTitle: crystal structure of a putative deoxyguanosinetriphosphate2 triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a 37 c3lmaC_ not modelled 44.5 19 PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. 38 c3hc1A_ not modelled 43.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution 39 c3m1tA_ not modelled 41.1 14 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of putative phosphohydrolase (yp_929327.1) from2 shewanella amazonensis sb2b at 1.62 a resolution 40 d1vqra_ not modelled 40.9 12 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:modified HD domain 41 d1ylqa1 not modelled 38.8 30 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 42 c2w9mB_ not modelled 34.1 21 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 43 d2ibna1 not modelled 31.2 16 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:MioX-like 44 d2heka1 not modelled 30.7 20 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 45 c2huoA_ not modelled 26.1 26 PDB header:oxidoreductase Chain: A: PDB Molecule:inositol oxygenase; PDBTitle: crystal structure of mouse myo-inositol oxygenase in complex with2 substrate 46 d3bxda1 not modelled 26.1 26 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:MioX-like 47 d1jmsa4 not modelled 21.1 17 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:DNA polymerase beta-like 48 d1wota_ not modelled 20.1 18 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 49 c3bg2A_ not modelled 19.6 23 PDB header:hydrolase Chain: A: PDB Molecule:dgtp triphosphohydrolase; PDBTitle: crystal structure of deoxyguanosinetriphosphate triphosphohydrolase2 from flavobacterium sp. med217 50 c3k1rB_ not modelled 19.4 24 PDB header:structural protein Chain: B: PDB Molecule:usher syndrome type-1g protein; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 51 d1r89a2 not modelled 18.6 13 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Archaeal tRNA CCA-adding enzyme catalytic domain 52 d2bcqa3 not modelled 17.2 10 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:DNA polymerase beta-like 53 d2b7oa1 not modelled 17.0 38 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase 54 d1no5a_ not modelled 15.8 18 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 55 d2dula1 not modelled 15.1 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TRM1-like 56 d1bgfa_ not modelled 12.8 22 Fold:Transcription factor STAT-4 N-domain Superfamily:Transcription factor STAT-4 N-domain Family:Transcription factor STAT-4 N-domain 57 c3riuC_ not modelled 12.7 22 PDB header:hydrolase Chain: C: PDB Molecule:translin associated factor x, isoform b; PDBTitle: crystal structure of drosophila hexameric c3po formed by truncated2 translin and trax 58 c2bcuA_ not modelled 12.2 14 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 59 c2ihmA_ not modelled 11.8 18 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 60 d1vola2 not modelled 11.4 17 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 61 d1es6a1 not modelled 11.3 45 Fold:EV matrix protein Superfamily:EV matrix protein Family:EV matrix protein 62 d2gmwa1 not modelled 11.0 22 Fold:HAD-like Superfamily:HAD-like Family:Histidinol phosphatase-like 63 c3esqA_ not modelled 11.0 22 PDB header:hydrolase Chain: A: PDB Molecule:d,d-heptose 1,7-bisphosphate phosphatase; PDBTitle: crystal structure of calcium-bound d,d-heptose 1.7-2 bisphosphate phosphatase from e. coli 64 c2r8qA_ not modelled 10.0 21 PDB header:hydrolase Chain: A: PDB Molecule:class i phosphodiesterase pdeb1; PDBTitle: structure of lmjpdeb1 in complex with ibmx 65 d1t3ta4 not modelled 9.3 44 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 66 d2fmpa3 not modelled 9.2 14 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:DNA polymerase beta-like 67 c3ndcB_ not modelled 9.2 29 PDB header:transferase Chain: B: PDB Molecule:precorrin-4 c(11)-methyltransferase; PDBTitle: crystal structure of precorrin-4 c11-methyltransferase from2 rhodobacter capsulatus 68 d1vk3a1 not modelled 9.1 67 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 69 c1h2dA_ not modelled 9.1 45 PDB header:virus/viral protein Chain: A: PDB Molecule:matrix protein vp40; PDBTitle: ebola virus matrix protein vp40 n-terminal domain in2 complex with rna (low-resolution vp40[31-212] variant). 70 c2cqzA_ not modelled 9.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long hypothetical protein; PDBTitle: crystal structure of ph0347 protein from pyrococcus horikoshii ot3 71 d1h2ca_ not modelled 9.1 45 Fold:EV matrix protein Superfamily:EV matrix protein Family:EV matrix protein 72 d1jqra_ not modelled 8.8 18 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:DNA polymerase beta-like 73 c2rffA_ not modelled 8.6 26 PDB header:transferase Chain: A: PDB Molecule:putative nucleotidyltransferase; PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution 74 d1uqva_ not modelled 8.6 4 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 75 c1b0nB_ not modelled 7.8 32 PDB header:transcription regulator Chain: B: PDB Molecule:protein (sini protein); PDBTitle: sinr protein/sini protein complex 76 d1b0nb_ not modelled 7.8 32 Fold:Dimerisation interlock Superfamily:SinR repressor dimerisation domain-like Family:SinR repressor dimerisation domain-like 77 d1g60a_ not modelled 7.6 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 78 d1eg2a_ not modelled 7.4 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 79 d1vola1 not modelled 7.4 12 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 80 c3ljvA_ not modelled 7.4 9 PDB header:transcription Chain: A: PDB Molecule:mmoq response regulator; PDBTitle: crystal structure of mmoq response regulator (fragment 29-302) from2 methylococcus capsulatus str. bath, northeast structural genomics3 consortium target mcr175m 81 c2zifB_ not modelled 7.3 25 PDB header:transferase Chain: B: PDB Molecule:putative modification methylase; PDBTitle: crystal structure of ttha0409, putative dna modification2 methylase from thermus thermophilus hb8- complexed with s-3 adenosyl-l-methionine 82 d2vana2 not modelled 7.1 21 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:DNA polymerase beta-like 83 c1xotB_ not modelled 6.3 14 PDB header:hydrolase Chain: B: PDB Molecule:camp-specific 3',5'-cyclic phosphodiesterase 4b; PDBTitle: catalytic domain of human phosphodiesterase 4b in complex with2 vardenafil 84 c2w11B_ not modelled 5.9 25 PDB header:hydrolase Chain: B: PDB Molecule:2-haloalkanoic acid dehalogenase; PDBTitle: structure of the l-2-haloacid dehalogenase from sulfolobus2 tokodaii 85 c2ounA_ not modelled 5.9 16 PDB header:hydrolase Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic PDBTitle: crystal structure of pde10a2 in complex with amp 86 c3i7aA_ not modelled 5.8 9 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphohydrolase; PDBTitle: crystal structure of putative metal-dependent phosphohydrolase2 (yp_926882.1) from shewanella amazonensis sb2b at 2.06 a resolution 87 c1nw6A_ not modelled 5.7 17 PDB header:transferase Chain: A: PDB Molecule:modification methylase rsri; PDBTitle: structure of the beta class n6-adenine dna methyltransferase rsri2 bound to sinefungin 88 d1tbfa_ not modelled 5.7 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 89 c1xozA_ not modelled 5.7 13 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: catalytic domain of human phosphodiesterase 5a in complex2 with tadalafil 90 c1es6A_ not modelled 5.6 45 PDB header:viral protein Chain: A: PDB Molecule:matrix protein vp40; PDBTitle: crystal structure of the matrix protein of ebola virus 91 d1oxja1 not modelled 5.6 12 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 92 d1sv0c_ not modelled 5.5 16 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Pointed domain 93 d1taza_ not modelled 5.5 31 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 94 d1pv5a_ not modelled 5.4 30 Fold:Hypothetical protein YwqG Superfamily:Hypothetical protein YwqG Family:Hypothetical protein YwqG 95 c2zq5A_ not modelled 5.1 22 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf1 from2 mycobacterium tuberculosis h37rv (type1 form)