Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP62558
DateThu Jan 5 12:07:38 GMT 2012
Unique Job ID92bc367d5abf48be

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1vz0B_
Top template information
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome partitioning protein parb;
PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus
Confidence and coverage
Confidence:100.0% Coverage: 53%
170 residues ( 53% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
284 residues ( 88%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKRAPVIPKHTLNTQPVEDTSLSTPAAPMVDSLIARVGVMARGNAITLPVCGRDVKFTLE
Secondary structure 

































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Disorder  ?????????????????????????????????????????????????????????
??
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   .........70.........80.........90.........100.........110.........120
Sequence  VLRGDSVEKTSRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSGVIEIADGS
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Disorder  ???


??????



?

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   .........130.........140.........150.........160.........170.........180
Sequence  RRRKAAALTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGQRYASRLQNEFAGNIS
Secondary structure 















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???

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   .........190.........200.........210.........220.........230.........240
Sequence  ALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKEELLKQQAS
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??????











??








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   .........250.........260.........270.........280.........290.........300
Sequence  NLHEQKKAGVIFEAEEVITLLTSVLKTSSASRTSLSSRHQFAPGATVLYKGDKMVLNLDR
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Disorder 



?????????








??????????????????????




???







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   .........310.........320...
Sequence  SRVPTECIEKIEAILKELEKPAP
Secondary structure 








SS confidence 






















Disorder  ????












??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1vz0 chain B

3D model

Region: 69 - 241
Aligned: 170
Modelled: 173
Confidence: 100.0%
Identity: 19%
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome partitioning protein parb;
PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus

Phyre2

PDB 1vk1 chain A

3D model

Region: 68 - 222
Aligned: 154
Modelled: 155
Confidence: 99.9%
Identity: 12%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Hypothetical protein PF0380

Phyre2

PDB 1vz0 chain A domain 2

3D model

Region: 69 - 156
Aligned: 88
Modelled: 88
Confidence: 99.8%
Identity: 22%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: ParB-like nuclease domain

Phyre2

PDB 3mky chain P

3D model

Region: 158 - 270
Aligned: 113
Modelled: 113
Confidence: 99.8%
Identity: 99%
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form

Phyre2

PDB 1zx4 chain B

3D model

Region: 159 - 322
Aligned: 160
Modelled: 164
Confidence: 99.8%
Identity: 17%
PDB header:translation
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna

Phyre2

PDB 3mkz chain U

3D model

Region: 158 - 267
Aligned: 110
Modelled: 110
Confidence: 99.8%
Identity: 99%
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form

Phyre2

PDB 2b6f chain A domain 1

3D model

Region: 22 - 155
Aligned: 111
Modelled: 120
Confidence: 99.6%
Identity: 8%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Sulfiredoxin-like

Phyre2

PDB 1xw3 chain A domain 1

3D model

Region: 56 - 155
Aligned: 91
Modelled: 100
Confidence: 99.6%
Identity: 7%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Sulfiredoxin-like

Phyre2

PDB 1r71 chain A

3D model

Region: 149 - 259
Aligned: 109
Modelled: 111
Confidence: 99.4%
Identity: 16%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: KorB DNA-binding domain-like
Family: KorB DNA-binding domain-like

Phyre2

PDB 1r71 chain B

3D model

Region: 149 - 259
Aligned: 109
Modelled: 111
Confidence: 99.4%
Identity: 16%
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna

Phyre2

PDB 1vz0 chain A domain 1

3D model

Region: 157 - 241
Aligned: 82
Modelled: 85
Confidence: 99.3%
Identity: 16%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: KorB DNA-binding domain-like
Family: KorB DNA-binding domain-like

Phyre2

PDB 3kz5 chain E

3D model

Region: 272 - 319
Aligned: 48
Modelled: 48
Confidence: 97.7%
Identity: 92%
PDB header:dna binding protein
Chain: E: PDB Molecule:protein sopb;
PDBTitle: structure of cdomain

Phyre2

PDB 2w48 chain D

3D model

Region: 164 - 201
Aligned: 36
Modelled: 38
Confidence: 95.1%
Identity: 14%
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae

Phyre2

PDB 2fjr chain B

3D model

Region: 166 - 222
Aligned: 57
Modelled: 57
Confidence: 93.7%
Identity: 7%
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186

Phyre2

PDB 2hwj chain A domain 1

3D model

Region: 103 - 153
Aligned: 50
Modelled: 51
Confidence: 93.7%
Identity: 10%
Fold: ParB/Sulfiredoxin
Superfamily: ParB/Sulfiredoxin
Family: Atu1540-like

Phyre2

PDB 2eby chain A

3D model

Region: 164 - 229
Aligned: 66
Modelled: 66
Confidence: 93.7%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli

Phyre2

PDB 3trb chain A

3D model

Region: 164 - 244
Aligned: 81
Modelled: 81
Confidence: 93.7%
Identity: 20%
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii

Phyre2

PDB 1u78 chain A

3D model

Region: 157 - 198
Aligned: 39
Modelled: 42
Confidence: 93.6%
Identity: 18%
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna

Phyre2

PDB 2ict chain A domain 1

3D model

Region: 164 - 224
Aligned: 60
Modelled: 61
Confidence: 93.6%
Identity: 18%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: SinR domain-like

Phyre2

PDB 3cec chain A

3D model

Region: 164 - 242
Aligned: 78
Modelled: 79
Confidence: 92.6%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution

Phyre2
1

c1vz0B_
2

d1vk1a_
3

d1vz0a2
4

c3mkyP_
5

c1zx4B_
6

c3mkzU_
7

d2b6fa1
8

d1xw3a1
9

d1r71a_
10

c1r71B_
11

d1vz0a1
12

c3kz5E_
13

c2w48D_
14

c2fjrB_
15

d2hwja1
16

c2ebyA_
17

c3trbA_
18

c1u78A_
19

d2icta1
20

c3cecA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1vz0B_



100.0 19 PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome partitioning protein parb;
PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus
2d1vk1a_



99.9 12 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Hypothetical protein PF0380
3d1vz0a2



99.8 22 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:ParB-like nuclease domain
4c3mkyP_



99.8 99 PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
5c1zx4B_



99.8 17 PDB header:translation
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
6c3mkzU_



99.8 99 PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
7d2b6fa1



99.6 8 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Sulfiredoxin-like
8d1xw3a1



99.6 7 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Sulfiredoxin-like
9d1r71a_



99.4 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
10c1r71B_



99.4 16 PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna
11d1vz0a1



99.3 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
12c3kz5E_



97.7 92 PDB header:dna binding protein
Chain: E: PDB Molecule:protein sopb;
PDBTitle: structure of cdomain
13c2w48D_



95.1 14 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
14c2fjrB_



93.7 7 PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
15d2hwja1



93.7 10 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Atu1540-like
16c2ebyA_



93.7 18 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
17c3trbA_



93.7 20 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
18c1u78A_



93.6 18 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
19d2icta1



93.6 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
20c3cecA_



92.6 17 PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
21c3ivpD_



not modelled 91.8 12 PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
22d1biaa1



not modelled 91.5 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
23c1y9qA_



not modelled 91.3 9 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
24d2d1ha1



not modelled 91.1 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
25c2wteB_



not modelled 90.9 16 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
26c2kpjA_



not modelled 90.9 9 PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
27d1rioa_



not modelled 90.7 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
28c3korD_



not modelled 90.6 8 PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
29d1mkma1



not modelled 90.4 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
30c3frwF_



not modelled 90.2 10 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative trp repressor protein;
PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum
31c2o38A_



not modelled 90.0 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
32d2o38a1



not modelled 90.0 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
33d1hlva1



not modelled 89.9 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
34c3r0aB_



not modelled 89.8 7 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
35d2a6ca1



not modelled 89.8 8 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
36c3t76A_



not modelled 89.3 7 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
37c3op9A_



not modelled 89.1 8 PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
38c1b0nA_



not modelled 88.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
39d1r69a_



not modelled 88.4 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
40c3fmyA_



not modelled 88.3 7 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
41c2ef8A_



not modelled 88.2 19 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
42c2xcjB_



not modelled 88.0 8 PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
43c3f6wE_



not modelled 88.0 10 PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
44d1y9qa1



not modelled 87.7 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
45d1adra_



not modelled 87.6 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
46d1sq8a_



not modelled 87.4 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
47d1ku9a_



not modelled 87.3 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
48c3dnvB_



not modelled 87.0 21 PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator hipb;
PDBTitle: mdt protein
49d1j5ya1



not modelled 87.0 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
50d2cg4a1



not modelled 86.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
51c2ppxA_



not modelled 86.5 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
52d2ppxa1



not modelled 86.5 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
53d2b5aa1



not modelled 86.3 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
54d1i1ga1



not modelled 86.2 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
55d1x57a1



not modelled 86.0 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
56d1bw6a_



not modelled 86.0 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
57c2g7uB_



not modelled 85.9 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
58c3clcC_



not modelled 85.7 12 PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
59d1lcda_



not modelled 85.5 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
60c3eusB_



not modelled 85.5 10 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
61d1g3wa1



not modelled 85.4 6 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
62d2isya1



not modelled 85.3 6 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
63d1pdnc_



not modelled 85.3 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
64d1jhfa1



not modelled 85.2 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
65d1b0na2



not modelled 85.1 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
66c3mlfC_



not modelled 85.1 11 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
67c2it0A_



not modelled 84.9 6 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
68d1ku7a_



not modelled 84.9 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
69c1mkmA_



not modelled 84.6 12 PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
70c3f52A_



not modelled 84.5 18 PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
71c2x4hA_



not modelled 84.1 9 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
72d2croa_



not modelled 84.0 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
73c1bdhA_



not modelled 83.9 29 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
74c3bdnB_



not modelled 83.9 16 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
75d1i5za1



not modelled 83.8 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
76d1lmb3_



not modelled 83.7 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
77d1qpza1



not modelled 83.5 29 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
78d1k78a1



not modelled 83.2 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
79c3omtA_



not modelled 83.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
80d2cfxa1



not modelled 83.0 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
81d2bjca1



not modelled 82.8 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
82d2ev0a1



not modelled 82.7 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
83d2p7vb1



not modelled 82.7 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
84c3b7hA_



not modelled 82.7 8 PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
85c1f5tA_



not modelled 82.6 6 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
86c2bnoA_



not modelled 82.6 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
87d1llib_



not modelled 82.6 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
88c3sztB_



not modelled 82.3 11 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
89d1uxca_



not modelled 82.3 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
90d2hsga1



not modelled 82.2 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
91d1y7ya1



not modelled 82.1 10 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
92c2h09A_



not modelled 81.7 6 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
93c2jvlA_



not modelled 81.4 13 PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
94c3g3zA_



not modelled 81.2 6 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
95d1ku3a_



not modelled 81.1 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
96c2ia2D_



not modelled 81.0 20 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
97c2l4aA_



not modelled 80.9 10 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
98d2cyya1



not modelled 80.7 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
99c2lcvA_



not modelled 80.6 15 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
100d2oz6a1



not modelled 80.6 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
101d1sfxa_



not modelled 80.3 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
102d1ft9a1



not modelled 80.1 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
103d2gaua1



not modelled 80.0 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
104c2ev5B_



not modelled 80.0 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
105d1uxda_



not modelled 79.7 24 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
106c3gn5B_



not modelled 79.6 7 PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
107c2fa5B_



not modelled 79.4 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
108c2q0oA_



not modelled 79.4 14 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
109c1zgwA_



not modelled 79.4 21 PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
110c3k2zA_



not modelled 79.4 9 PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima
111c3kjxD_



not modelled 79.2 14 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
112d1efaa1



not modelled 79.2 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
113c3bd1B_



not modelled 79.1 24 PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
114c3h5tA_



not modelled 79.0 26 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
115d2coha1



not modelled 78.9 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
116d2h6ca1



not modelled 78.9 4 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
117c1zvvA_



not modelled 78.8 22 PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
118c3bs3A_



not modelled 78.4 17 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
119c2qwwB_



not modelled 78.1 6 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
120d2r1jl1



not modelled 78.1 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0