Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	R	L	A	T	I	A	P	P	Q	V	H	E	I	W	A	L	L	S	Q	I	P	D	P	E	I	P	V	L	T	I	T	D	L	G	M	V	R	N	V	T	Q	M	G	E	G	W	V	I	G	F	T	P	T	Y	S	G	C	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	E	H	L	I	G	A	I	R	E	A	M	T	T	N	G	F	T	P	V	Q	V	V	L	Q	L	D	P	A	W	T	T	D	W	M	T	P	D	A	R	E	R	L	R	E	Y	G	I	S	P	P	A	G	H	S	C	H	A	H
Secondary structure
SS confidence
Disorder																																																?	?					?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Sequence		L	P	P	E	V	R	C	P	R	C	A	S	V	H	T	T	L	I	S	E	F	G	S	T	A	C	K	A	L	Y	R	C	D	S	C	R	E	P	F	D	Y	F	K	C	I
Secondary structure
SS confidence
Disorder		?	?											?		?			?	?	?	?																					?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3lno chain A Region: 13 - 109 Aligned: 93 Modelled: 97 Confidence: 100.0% Identity: 28% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis Phyre2 PDB 1uwd chain A Region: 8 - 109 Aligned: 98 Modelled: 102 Confidence: 100.0% Identity: 27% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: PaaD-like Phyre2 PDB 2cu6 chain A domain 1 Region: 10 - 100 Aligned: 90 Modelled: 91 Confidence: 99.9% Identity: 30% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: PaaD-like Phyre2 PDB 2z51 chain A Region: 9 - 106 Aligned: 93 Modelled: 93 Confidence: 94.3% Identity: 17% PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis Phyre2 PDB 1xhj chain A Region: 4 - 85 Aligned: 77 Modelled: 82 Confidence: 94.1% Identity: 21% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 2jnv chain A Region: 9 - 82 Aligned: 69 Modelled: 74 Confidence: 94.1% Identity: 19% PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa Phyre2 PDB 1veh chain A Region: 12 - 82 Aligned: 67 Modelled: 71 Confidence: 89.3% Identity: 19% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 1th5 chain A domain 1 Region: 9 - 83 Aligned: 68 Modelled: 72 Confidence: 87.8% Identity: 13% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 3cw2 chain M Region: 125 - 156 Aligned: 28 Modelled: 28 Confidence: 78.7% Identity: 36% PDB header:translation Chain: M: PDB Molecule:translation initiation factor 2 subunit beta; PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus . Phyre2 PDB 3a44 chain D Region: 125 - 139 Aligned: 15 Modelled: 15 Confidence: 74.0% Identity: 27% PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form Phyre2 PDB 1nee chain A Region: 125 - 156 Aligned: 28 Modelled: 32 Confidence: 73.0% Identity: 32% PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum Phyre2 PDB 1k81 chain A Region: 125 - 138 Aligned: 14 Modelled: 14 Confidence: 72.0% Identity: 36% Fold: Zinc-binding domain of translation initiation factor 2 beta Superfamily: Zinc-binding domain of translation initiation factor 2 beta Family: Zinc-binding domain of translation initiation factor 2 beta Phyre2 PDB 1dl6 chain A Region: 117 - 147 Aligned: 31 Modelled: 31 Confidence: 70.4% Identity: 19% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2kdx chain A Region: 126 - 139 Aligned: 14 Modelled: 14 Confidence: 69.6% Identity: 21% PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein Phyre2 PDB 2akl chain A Region: 125 - 140 Aligned: 16 Modelled: 16 Confidence: 65.1% Identity: 31% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa Phyre2 PDB 1wii chain A Region: 109 - 161 Aligned: 52 Modelled: 53 Confidence: 61.1% Identity: 19% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Putative zinc binding domain Phyre2 PDB 1pft chain A Region: 121 - 147 Aligned: 27 Modelled: 27 Confidence: 59.6% Identity: 26% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1nui chain A domain 2 Region: 126 - 146 Aligned: 21 Modelled: 21 Confidence: 58.4% Identity: 29% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: DNA primase zinc finger Phyre2 PDB 3byp chain A domain 1 Region: 7 - 86 Aligned: 74 Modelled: 80 Confidence: 57.8% Identity: 19% Fold: Alpha-lytic protease prodomain-like Superfamily: Cation efflux protein cytoplasmic domain-like Family: Cation efflux protein cytoplasmic domain-like Phyre2 PDB 2dcu chain B Region: 125 - 138 Aligned: 14 Modelled: 14 Confidence: 57.1% Identity: 50% PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp Phyre2 1 c3lnoA_ 2 d1uwda_ 3 d2cu6a1 4 c2z51A_ 5 d1xhja_ 6 c2jnvA_ 7 d1veha_ 8 d1th5a1 9 c3cw2M_ 10 c3a44D_ 11 c1neeA_ 12 d1k81a_ 13 d1dl6a_ 14 c2kdxA_ 15 c2aklA_ 16 d1wiia_ 17 d1pfta_ 18 d1nuia2 19 d3bypa1 20 c2dcuB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3lnoA_ 100.0 28 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis 2 d1uwda_ 100.0 27 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 3 d2cu6a1 99.9 30 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 4 c2z51A_ 94.3 17 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis 5 d1xhja_ 94.1 21 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 6 c2jnvA_ 94.1 19 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 7 d1veha_ 89.3 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 8 d1th5a1 87.8 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 9 c3cw2M_ 78.7 36 PDB header:translation Chain: M: PDB Molecule:translation initiation factor 2 subunit beta; PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus . 10 c3a44D_ 74.0 27 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 11 c1neeA_ 73.0 32 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum 12 d1k81a_ 72.0 36 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 13 d1dl6a_ 70.4 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 14 c2kdxA_ 69.6 21 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 15 c2aklA_ 65.1 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 16 d1wiia_ 61.1 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 17 d1pfta_ 59.6 26 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 18 d1nuia2 58.4 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 19 d3bypa1 57.8 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 20 c2dcuB_ 57.1 50 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp 21 d2akla2 not modelled 55.2 38 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 22 d1hk8a_ not modelled 52.0 21 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 23 c1hk8A_ not modelled 52.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 24 c2e9hA_ not modelled 50.3 43 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 25 d1lv3a_ not modelled 49.9 32 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 26 c3lpeF_ not modelled 44.4 40 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 27 c2xigA_ not modelled 40.5 12 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 28 c3qxbB_ not modelled 39.0 18 PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution 29 c1x31D_ not modelled 38.6 36 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 30 c1qysA_ not modelled 37.9 13 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 31 c1eucB_ not modelled 37.4 15 PDB header:ligase Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain; PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase 32 c2kt2A_ not modelled 37.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 33 c2elpA_ not modelled 35.3 18 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 34 c2opfA_ not modelled 34.4 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 35 d1atga_ not modelled 34.3 24 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 36 c3zyqA_ not modelled 33.7 28 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 37 d1qupa2 not modelled 33.6 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 38 c1k82D_ not modelled 33.3 20 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 39 d2fhpa1 not modelled 33.2 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:YhhF-like 40 d2gnra1 not modelled 33.0 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 41 c2jvfA_ not modelled 32.7 17 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 42 d1j26a_ not modelled 32.0 23 Fold:dsRBD-like Superfamily:Peptidyl-tRNA hydrolase domain-like Family:Peptidyl-tRNA hydrolase domain 43 d1pfva3 not modelled 31.6 40 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 44 d2dsxa1 not modelled 31.4 14 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 45 c3mv2A_ not modelled 30.0 17 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 46 d1iloa_ not modelled 28.0 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 47 c1nnjA_ not modelled 27.8 28 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 48 c2rrlA_ not modelled 27.3 16 PDB header:protein transport Chain: A: PDB Molecule:flagellar hook-length control protein; PDBTitle: solution structure of the c-terminal domain of the flik 49 c2fu4B_ not modelled 27.2 23 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 50 d2r7ca2 not modelled 27.1 71 Fold:Rotavirus NSP2 fragment, N-terminal domain Superfamily:Rotavirus NSP2 fragment, N-terminal domain Family:Rotavirus NSP2 fragment, N-terminal domain 51 c2k2dA_ not modelled 26.8 31 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 52 c2o03A_ not modelled 26.7 23 PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator 53 d2fiya1 not modelled 26.3 17 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 54 c2csuB_ not modelled 26.0 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 55 d4rxna_ not modelled 25.5 15 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 56 c2hk1D_ not modelled 25.4 18 PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose 57 d1mzba_ not modelled 25.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 58 c2x5cB_ not modelled 24.4 33 PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein orf131; PDBTitle: crystal structure of hypothetical protein orf131 from2 pyrobaculum spherical virus 59 c3jvfC_ not modelled 24.4 18 PDB header:signaling protein / cytokine Chain: C: PDB Molecule:interleukin-17 receptor a; PDBTitle: crystal structure of an interleukin-17 receptor complex 60 c3eyyA_ not modelled 24.4 17 PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition 61 c2l7xA_ not modelled 24.2 60 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: crimean congo hemorrhagic fever gn zinc finger 62 c2w57A_ not modelled 24.0 26 PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains 63 d1r7ha_ not modelled 23.9 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 64 c2nu9E_ not modelled 23.9 15 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 65 d1xzoa1 not modelled 23.2 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 66 c2kn9A_ not modelled 23.2 13 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 67 d1dx8a_ not modelled 23.0 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 68 d1h7va_ not modelled 22.8 26 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 69 d1tz9a_ not modelled 22.7 19 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 70 c1s24A_ not modelled 22.6 17 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 71 d1s24a_ not modelled 22.6 17 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 72 c2f5qA_ not modelled 22.6 24 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 73 c3mkrB_ not modelled 22.5 29 PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat 74 c2pptA_ not modelled 22.2 10 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 75 d1iroa_ not modelled 21.9 15 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 76 d2fu5a1 not modelled 21.8 50 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 77 c3ktcB_ not modelled 21.7 20 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 78 d1ee8a3 not modelled 21.6 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 79 d2ct1a1 not modelled 21.6 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 80 d1brfa_ not modelled 21.4 17 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 81 d1cmca_ not modelled 21.3 44 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Met repressor, MetJ (MetR) 82 d1qcva_ not modelled 21.2 10 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 83 d1rb9a_ not modelled 21.0 14 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 84 d1w4ha1 not modelled 20.7 28 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 85 d1vbka2 not modelled 20.5 20 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 86 c1jrxA_ not modelled 20.3 46 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 87 c2v3bB_ not modelled 20.1 17 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 88 d2rdva_ not modelled 20.0 17 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 89 c2owoA_ not modelled 19.9 17 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 90 c2r7cA_ not modelled 19.7 71 PDB header:rna binding protein Chain: A: PDB Molecule:non-structural rna-binding protein 35; PDBTitle: crystallographic and biochemical analysis of rotavirus nsp22 with nucleotides reveals an ndp kinase like activity 91 d2qifa1 not modelled 19.3 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 92 c2v51E_ not modelled 19.3 58 PDB header:structural protein/contractile protein Chain: E: PDB Molecule:mkl/myocardin-like protein 1; PDBTitle: structure of mal-rpel1 complexed to actin 93 d1hxra_ not modelled 19.1 50 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 94 d2fyma1 not modelled 19.1 23 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 95 c3io1B_ not modelled 19.0 12 PDB header:hydrolase Chain: B: PDB Molecule:aminobenzoyl-glutamate utilization protein; PDBTitle: crystal structure of aminobenzoyl-glutamate utilization2 protein from klebsiella pneumoniae 96 c1ee8A_ not modelled 18.7 24 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 97 d1tdza3 not modelled 18.6 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 98 c2jvaA_ not modelled 18.4 31 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 99 d2gmga1 not modelled 18.2 45 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0