Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	C	P	F	C	F	A	V	D	T	K	V	I	D	S	R	L	V	G	E	G	S	S	V	R	R	R	R	Q	C	L	V	C	N	E	R	F	T	T	F	E	V	A	E	L	V	M	P	R	V	V	K	S	N	D	V	R	E	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?												?	?	?	?	?	?	?																				?			?										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	N	E	E	K	L	R	S	G	M	L	R	A	L	E	K	R	P	V	S	S	D	D	V	E	M	A	I	N	H	I	K	S	Q	L	R	A	T	G	E	R	E	V	P	S	K	M	I	G	N	L	V	M	E	Q	L	K	K	L	D
Secondary structure
SS confidence
Disorder		?	?														?	?	?	?	?																	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Sequence		K	V	A	Y	I	R	F	A	S	V	Y	R	S	F	E	D	I	K	E	F	G	E	E	I	A	R	L	E	D
Secondary structure
SS confidence
Disorder																													?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3r1r chain B Region: 49 - 128 Aligned: 74 Modelled: 80 Confidence: 98.4% Identity: 19% PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli Phyre2 PDB 1rlr chain A domain 1 Region: 54 - 119 Aligned: 60 Modelled: 66 Confidence: 97.7% Identity: 15% Fold: R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain Family: R1 subunit of ribonucleotide reductase, N-terminal domain Phyre2 PDB 1qyp chain A Region: 2 - 42 Aligned: 39 Modelled: 41 Confidence: 95.4% Identity: 21% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1twf chain I domain 2 Region: 1 - 40 Aligned: 38 Modelled: 40 Confidence: 94.6% Identity: 29% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 3k7a chain M Region: 1 - 36 Aligned: 29 Modelled: 36 Confidence: 93.8% Identity: 31% PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex Phyre2 PDB 1i3q chain I Region: 1 - 40 Aligned: 38 Modelled: 40 Confidence: 93.3% Identity: 29% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Phyre2 PDB 1tfi chain A Region: 2 - 38 Aligned: 35 Modelled: 36 Confidence: 93.0% Identity: 23% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 3gn5 chain B Region: 1 - 42 Aligned: 42 Modelled: 42 Confidence: 92.9% Identity: 24% PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) Phyre2 PDB 2gb5 chain B Region: 3 - 58 Aligned: 44 Modelled: 56 Confidence: 91.6% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 3h0g chain I Region: 1 - 39 Aligned: 37 Modelled: 39 Confidence: 91.3% Identity: 22% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Phyre2 PDB 1wii chain A Region: 2 - 40 Aligned: 35 Modelled: 39 Confidence: 89.8% Identity: 29% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Putative zinc binding domain Phyre2 PDB 1dl6 chain A Region: 1 - 35 Aligned: 26 Modelled: 33 Confidence: 86.9% Identity: 27% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2fiy chain A domain 1 Region: 1 - 41 Aligned: 41 Modelled: 41 Confidence: 83.6% Identity: 20% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 1pfv chain A domain 3 Region: 3 - 48 Aligned: 31 Modelled: 31 Confidence: 78.2% Identity: 29% Fold: Rubredoxin-like Superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain Family: Methionyl-tRNA synthetase (MetRS), Zn-domain Phyre2 PDB 2e9h chain A Region: 3 - 39 Aligned: 29 Modelled: 37 Confidence: 76.6% Identity: 31% PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 Phyre2 PDB 1rj9 chain B domain 1 Region: 52 - 119 Aligned: 68 Modelled: 68 Confidence: 75.9% Identity: 18% Fold: Four-helical up-and-down bundle Superfamily: Domain of the SRP/SRP receptor G-proteins Family: Domain of the SRP/SRP receptor G-proteins Phyre2 PDB 3hnf chain A Region: 64 - 128 Aligned: 61 Modelled: 65 Confidence: 75.2% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp Phyre2 PDB 1ls1 chain A domain 1 Region: 62 - 119 Aligned: 58 Modelled: 58 Confidence: 74.6% Identity: 21% Fold: Four-helical up-and-down bundle Superfamily: Domain of the SRP/SRP receptor G-proteins Family: Domain of the SRP/SRP receptor G-proteins Phyre2 PDB 1nui chain A Region: 3 - 42 Aligned: 31 Modelled: 40 Confidence: 73.6% Identity: 29% PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein Phyre2 PDB 3cng chain C Region: 3 - 38 Aligned: 29 Modelled: 36 Confidence: 73.3% Identity: 21% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 1vd4 chain A Region: 31 - 49 Aligned: 19 Modelled: 19 Confidence: 53.4% Identity: 42% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 1 c3r1rB_ 2 d1rlra1 3 d1qypa_ 4 d1twfi2 5 c3k7aM_ 6 c1i3qI_ 7 d1tfia_ 8 c3gn5B_ 9 c2gb5B_ 10 c3h0gI_ 11 d1wiia_ 12 d1dl6a_ 13 d2fiya1 14 d1pfva3 15 c2e9hA_ 16 d1rj9b1 17 c3hnfA_ 18 d1ls1a1 19 c1nuiA_ 20 c3cngC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 d1vd4a_ 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3r1rB_ 98.4 19 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 2 d1rlra1 97.7 15 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 3 d1qypa_ 95.4 21 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 4 d1twfi2 94.6 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 5 c3k7aM_ 93.8 31 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 6 c1i3qI_ 93.3 29 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 7 d1tfia_ 93.0 23 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 8 c3gn5B_ 92.9 24 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 9 c2gb5B_ 91.6 14 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 10 c3h0gI_ 91.3 22 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 11 d1wiia_ 89.8 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 12 d1dl6a_ 86.9 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 13 d2fiya1 83.6 20 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 14 d1pfva3 78.2 29 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 15 c2e9hA_ 76.6 31 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 16 d1rj9b1 75.9 18 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 17 c3hnfA_ 75.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 18 d1ls1a1 74.6 21 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 19 c1nuiA_ 73.6 29 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 20 c3cngC_ 73.3 21 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 21 c3ndjA_ not modelled 73.2 21 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 22 d1pfta_ not modelled 72.7 31 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 23 d1j8yf1 not modelled 70.6 19 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 24 c2qkdA_ not modelled 70.4 18 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 25 c2elpA_ not modelled 68.9 50 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 26 d1wgwa_ not modelled 68.7 21 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 27 d1vqoz1 not modelled 67.7 46 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 28 c4a17Y_ not modelled 66.5 39 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 29 c2zkrz_ not modelled 65.9 33 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 30 c2qa4Z_ not modelled 65.5 46 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 31 c1yshD_ not modelled 65.3 33 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 32 d2k4xa1 not modelled 64.6 35 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 33 d1jj2y_ not modelled 64.5 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 34 c2l7xA_ not modelled 64.5 41 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: crimean congo hemorrhagic fever gn zinc finger 35 c3jyw9_ not modelled 62.8 33 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 36 c1s1i9_ not modelled 62.6 33 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 37 d1ffkw_ not modelled 62.2 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 38 c3cc4Z_ not modelled 61.4 48 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 39 c2hu9B_ not modelled 54.8 38 PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain 40 d1vd4a_ 53.4 42 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 41 d1g2ra_ not modelled 53.2 16 Fold:YlxR-like Superfamily:YlxR-like Family:YlxR-like 42 c2f9iD_ not modelled 53.0 27 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 43 d1qzxa1 not modelled 52.3 17 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 44 c3eswA_ not modelled 51.5 23 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 45 c2aklA_ not modelled 50.5 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 46 c2xigA_ not modelled 50.1 18 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 47 d2cona1 not modelled 50.0 19 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 48 c1x6eA_ not modelled 48.9 15 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger protein 24; PDBTitle: solution structures of the c2h2 type zinc finger domain of2 human zinc finger protein 24 49 c2kvfA_ not modelled 48.5 50 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 50 d1x3za1 not modelled 48.2 10 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 51 c2jq5A_ not modelled 46.6 40 PDB header:structural genomics Chain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097 52 c2kaeA_ not modelled 45.3 18 PDB header:transcription/dna Chain: A: PDB Molecule:gata-type transcription factor; PDBTitle: data-driven model of med1:dna complex 53 c1meyG_ not modelled 45.0 27 PDB header:transferase/dna Chain: G: PDB Molecule:consensus zinc finger; PDBTitle: crystal structure of a designed zinc finger protein bound2 to dna 54 c2dmiA_ not modelled 43.9 7 PDB header:transcription Chain: A: PDB Molecule:teashirt homolog 3; PDBTitle: solution structure of the first and the second zf-c2h2 like2 domains of human teashirt homolog 3 55 c2jneA_ not modelled 43.4 40 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 56 d2jnea1 not modelled 43.4 40 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 57 c2f9yB_ not modelled 43.3 21 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 58 d2f9yb1 not modelled 43.3 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 59 c2ctdA_ not modelled 42.9 23 PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein 512; PDBTitle: solution structure of two zf-c2h2 domains from human zinc2 finger protein 512 60 c2cotA_ not modelled 42.4 15 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 435; PDBTitle: solution structure of the first and second zf-c2h2 domain2 of zinc finger protein 435 61 d1tlqa_ not modelled 42.4 20 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 62 c1tlqA_ not modelled 42.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64 63 d2cota1 not modelled 42.2 30 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 64 d1x6ea2 not modelled 42.1 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 65 c3hi2C_ not modelled 41.6 57 PDB header:dna binding protein/toxin Chain: C: PDB Molecule:hth-type transcriptional regulator mqsa(ygit); PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022) 66 c3c8fA_ not modelled 41.2 45 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet 67 c3g9yA_ not modelled 41.0 30 PDB header:transcription/rna Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2; PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa 68 d1a1ia2 not modelled 40.8 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 69 c1jocA_ not modelled 40.8 36 PDB header:membrane protein Chain: A: PDB Molecule:early endosomal autoantigen 1; PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate 70 d1llmc2 not modelled 40.8 30 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 71 d1srka_ not modelled 39.5 45 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 72 c3zyqA_ not modelled 39.2 25 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 73 d1u85a1 not modelled 38.6 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 74 c2gqjA_ not modelled 38.1 20 PDB header:gene regulation Chain: A: PDB Molecule:zinc finger protein kiaa1196; PDBTitle: solution structure of the two zf-c2h2 like domains(493-575)2 of human zinc finger protein kiaa1196 75 c1rikA_ not modelled 38.0 40 PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1) 76 d1p91a_ not modelled 37.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 77 d1xf7a_ not modelled 37.4 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 78 c1xf7A_ not modelled 37.4 40 PDB header:transcription Chain: A: PDB Molecule:wilms' tumor protein; PDBTitle: high resolution nmr structure of the wilms' tumor2 suppressor protein (wt1) finger 3 79 c2k2dA_ not modelled 36.7 33 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 80 d1m2ka_ not modelled 36.3 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 81 d1x6ea1 not modelled 36.3 27 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 82 c2elsA_ not modelled 36.3 36 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 2nd c2h2 zinc finger of human2 zinc finger protein 406 83 c2lk0A_ not modelled 36.0 37 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein 5; PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5 84 c1areA_ not modelled 35.2 40 PDB header:transcription regulation Chain: A: PDB Molecule:yeast transcription factor adr1; PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding 85 c3lpeF_ not modelled 34.5 30 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 86 d1p7aa_ not modelled 34.3 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 87 c2epsA_ not modelled 33.9 18 PDB header:transcription Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing PDBTitle: solution structure of the 4th zinc finger domain of zinc2 finger protein 278 88 d1a1ia3 not modelled 33.6 30 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 89 d1joca1 not modelled 33.6 35 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 90 c2jrpA_ not modelled 33.6 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 91 c1dgsB_ not modelled 33.0 48 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 92 c1ltlE_ not modelled 32.9 16 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 93 c2ztgA_ not modelled 32.9 22 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase lacking the c-terminal dimerization domain in3 complex with ala-sa 94 d1lkoa2 not modelled 32.8 24 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 95 c1va3A_ not modelled 32.8 40 PDB header:transcription Chain: A: PDB Molecule:transcription factor sp1; PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 3) 96 d2dula1 not modelled 32.1 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TRM1-like 97 c1sp1A_ not modelled 32.0 40 PDB header:zinc finger Chain: A: PDB Molecule:sp1f3; PDBTitle: nmr structure of a zinc finger domain from transcription2 factor sp1f3, minimized average structure 98 d1sp1a_ not modelled 32.0 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 99 c2hl7A_ not modelled 31.9 40 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 100 d2j0151 not modelled 31.9 29 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 101 c1v9pB_ not modelled 31.8 48 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 102 c2l8eA_ not modelled 31.8 28 PDB header:dna binding protein Chain: A: PDB Molecule:polyhomeotic-like protein 1; PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1) 103 c3f2cA_ not modelled 31.6 25 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 104 c3floD_ not modelled 31.6 24 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 105 d2zjrz1 not modelled 31.5 24 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 106 c1z2qA_ not modelled 31.4 31 PDB header:membrane protein Chain: A: PDB Molecule:lm5-1; PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major 107 c2kw0A_ not modelled 31.4 30 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 108 c3pkiF_ not modelled 31.3 21 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 109 c1rimA_ not modelled 31.2 40 PDB header:de novo protein Chain: A: PDB Molecule:e6apc2 peptide; PDBTitle: e6-binding zinc finger (e6apc2) 110 c2yteA_ not modelled 31.1 36 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 484-2 512) of human zinc finger protein 473 111 d2gmga1 not modelled 31.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 112 d1enwa_ not modelled 31.0 10 Fold:RuvA C-terminal domain-like Superfamily:Elongation factor TFIIS domain 2 Family:Elongation factor TFIIS domain 2 113 c1ardA_ not modelled 30.8 40 PDB header:transcription regulation Chain: A: PDB Molecule:yeast transcription factor adr1; PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding 114 d2adra1 not modelled 30.6 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 115 d2epqa1 not modelled 30.4 33 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 116 d1ltla_ not modelled 30.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA replication initiator (cdc21/cdc54) N-terminal domain 117 c2eltA_ not modelled 30.1 18 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 3rd c2h2 zinc finger of human2 zinc finger protein 406 118 d1k81a_ not modelled 29.8 50 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 119 d2ct1a2 not modelled 29.8 45 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 120 d1ubdc2 not modelled 29.2 31 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0