Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	E	L	T	W	H	D	V	L	A	E	E	K	Q	Q	P	Y	F	L	N	T	L	Q	T	V	A	S	E	R	Q	S	G	V	T	I	Y	P	P	Q	K	D	V	F	N	A	F	R	F	T	E	L	G	D	V	K	V	V	I
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	G	Q	D	P	Y	H	G	P	G	Q	A	H	G	L	A	F	S	V	R	P	G	I	A	I	P	P	S	L	L	N	M	Y	K	E	L	E	N	T	I	P	G	F	T	R	P	N	H	G	Y	L	E	S	W	A	R	Q	G	V	L
Secondary structure
SS confidence
Disorder																							?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	N	T	V	L	T	V	R	A	G	Q	A	H	S	H	A	S	L	G	W	E	T	F	T	D	K	V	I	S	L	I	N	Q	H	R	E	G	V	V	F	L	L	W	G	S	H	A	Q	K	K	G	A	I	I	D	K	Q	R	H
Secondary structure
SS confidence
Disorder										?	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence		H	V	L	K	A	P	H	P	S	P	L	S	A	H	R	G	F	F	G	C	N	H	F	V	L	A	N	Q	W	L	E	Q	R	G	E	T	P	I	D	W	M	P	V	L	P	A	E	S	E
Secondary structure
SS confidence
Disorder																			?																					?				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3eug chain A Region: 5 - 229 Aligned: 225 Modelled: 225 Confidence: 100.0% Identity: 99% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Uracil-DNA glycosylase Phyre2 PDB 3tr7 chain A Region: 4 - 223 Aligned: 219 Modelled: 220 Confidence: 100.0% Identity: 62% PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii Phyre2 PDB 1okb chain A Region: 2 - 223 Aligned: 221 Modelled: 222 Confidence: 100.0% Identity: 59% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Uracil-DNA glycosylase Phyre2 PDB 2hxm chain A domain 1 Region: 2 - 223 Aligned: 221 Modelled: 222 Confidence: 100.0% Identity: 56% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Uracil-DNA glycosylase Phyre2 PDB 2boo chain A Region: 2 - 228 Aligned: 225 Modelled: 227 Confidence: 100.0% Identity: 55% PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung)2 from deinococcus radiodurans. Phyre2 PDB 3cxm chain A Region: 1 - 226 Aligned: 226 Modelled: 226 Confidence: 100.0% Identity: 48% PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil Phyre2 PDB 1lau chain E Region: 3 - 222 Aligned: 217 Modelled: 220 Confidence: 100.0% Identity: 46% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Uracil-DNA glycosylase Phyre2 PDB 2zhx chain G Region: 3 - 223 Aligned: 217 Modelled: 221 Confidence: 100.0% Identity: 38% PDB header:hydrolase/hydrolase inhibitor Chain: G: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor Phyre2 PDB 2j8x chain A domain 1 Region: 1 - 222 Aligned: 220 Modelled: 222 Confidence: 100.0% Identity: 48% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Uracil-DNA glycosylase Phyre2 PDB 2owr chain D Region: 4 - 221 Aligned: 195 Modelled: 213 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: D: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase Phyre2 PDB 2rba chain B Region: 54 - 212 Aligned: 150 Modelled: 159 Confidence: 97.0% Identity: 10% PDB header:hydrolase/dna Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna Phyre2 PDB 2c2p chain A Region: 54 - 195 Aligned: 129 Modelled: 142 Confidence: 95.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase; PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans Phyre2 PDB 1oe4 chain A Region: 57 - 215 Aligned: 149 Modelled: 159 Confidence: 94.7% Identity: 17% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 Phyre2 PDB 1mug chain A Region: 54 - 195 Aligned: 132 Modelled: 134 Confidence: 94.7% Identity: 13% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Mug-like Phyre2 PDB 1ui0 chain A Region: 55 - 212 Aligned: 136 Modelled: 138 Confidence: 94.3% Identity: 18% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Mug-like Phyre2 PDB 3ikb chain B Region: 57 - 192 Aligned: 117 Modelled: 131 Confidence: 93.6% Identity: 23% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159. Phyre2 PDB 2d3y chain A Region: 55 - 192 Aligned: 128 Modelled: 138 Confidence: 92.4% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 Phyre2 PDB 1vk2 chain A Region: 57 - 213 Aligned: 134 Modelled: 146 Confidence: 90.4% Identity: 20% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Mug-like Phyre2 PDB 2h2w chain A Region: 128 - 168 Aligned: 40 Modelled: 41 Confidence: 50.6% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution Phyre2 PDB 3p9x chain B Region: 140 - 197 Aligned: 55 Modelled: 58 Confidence: 35.1% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans Phyre2 1 d3euga_ 2 c3tr7A_ 3 d1okba_ 4 d2hxma1 5 c2booA_ 6 c3cxmA_ 7 d1laue_ 8 c2zhxG_ 9 d2j8xa1 10 c2owrD_ 11 c2rbaB_ 12 c2c2pA_ 13 d1oe4a_ 14 d1muga_ 15 d1ui0a_ 16 c3ikbB_ 17 c2d3yA_ 18 d1vk2a_ 19 c2h2wA_ 20 c3p9xB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3euga_ 100.0 99 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 2 c3tr7A_ 100.0 62 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii 3 d1okba_ 100.0 59 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 4 d2hxma1 100.0 56 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 5 c2booA_ 100.0 55 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung)2 from deinococcus radiodurans. 6 c3cxmA_ 100.0 48 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil 7 d1laue_ 100.0 46 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 8 c2zhxG_ 100.0 38 PDB header:hydrolase/hydrolase inhibitor Chain: G: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor 9 d2j8xa1 100.0 48 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 10 c2owrD_ 100.0 20 PDB header:hydrolase Chain: D: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase 11 c2rbaB_ 97.0 10 PDB header:hydrolase/dna Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna 12 c2c2pA_ 95.0 13 PDB header:hydrolase Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase; PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans 13 d1oe4a_ 94.7 17 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 14 d1muga_ 94.7 13 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 15 d1ui0a_ 94.3 18 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 16 c3ikbB_ 93.6 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159. 17 c2d3yA_ 92.4 16 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 18 d1vk2a_ 90.4 20 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 19 c2h2wA_ 50.6 18 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 20 c3p9xB_ 35.1 18 PDB header:transferase Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans 21 d1meoa_ not modelled 32.3 20 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 22 c2l3fA_ not modelled 30.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a putative uracil dna glycosylase from2 methanosarcina acetivorans, northeast structural genomics consortium3 target mvr76 23 c2ywrA_ not modelled 30.0 17 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus 24 c3tqrA_ not modelled 25.7 17 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii 25 d1jkxa_ not modelled 22.1 25 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 26 c3dcjA_ not modelled 19.5 15 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 27 c3t7hB_ not modelled 15.6 20 PDB header:ligase Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: atg8 transfer from atg7 to atg3: a distinctive e1-e2 architecture and2 mechanism in the autophagy pathway 28 c1fmtA_ not modelled 15.1 21 PDB header:formyltransferase Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase; PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli 29 d2ghra1 not modelled 14.4 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 30 c3nrbD_ not modelled 13.4 11 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 31 d2blna2 not modelled 12.8 21 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 32 d1fmta2 not modelled 12.3 18 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 33 c2yqsA_ not modelled 12.0 17 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 34 c3o1lB_ not modelled 11.8 25 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 35 d1maba2 not modelled 11.7 29 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 36 d2bw0a2 not modelled 10.7 27 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 37 c3n0vD_ not modelled 10.5 17 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 38 c3oc9A_ not modelled 10.4 14 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica 39 c2p2gD_ not modelled 10.4 12 PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from mycobacterium2 tuberculosis (rv1656): orthorhombic form 40 d1skyb2 not modelled 9.8 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 41 c3ogzA_ not modelled 9.6 13 PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form 42 c3obiC_ not modelled 9.4 15 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 43 d1fx0a2 not modelled 9.4 29 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 44 c1yrwA_ not modelled 9.3 21 PDB header:transferase Chain: A: PDB Molecule:protein arna; PDBTitle: crystal structure of e.coli arna transformylase domain 45 c2xrfA_ not modelled 8.9 54 PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2 46 c3e35A_ not modelled 8.5 18 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein sco1997; PDBTitle: actinobacteria-specific protein of unknown function, sco1997 47 d1pj3a1 not modelled 8.5 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 48 d2jdia2 not modelled 8.3 29 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 49 d1q3qa2 not modelled 8.1 26 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 50 c3kcqA_ not modelled 8.1 20 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum 51 d1ekxa2 not modelled 7.9 26 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 52 d2j13a1 not modelled 7.8 9 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 53 c1z7eC_ not modelled 7.6 21 PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna 54 c2k3mA_ not modelled 7.2 70 PDB header:membrane protein Chain: A: PDB Molecule:rv1761c; PDBTitle: rv1761c 55 c2iw0A_ not modelled 7.2 12 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 56 d1r2aa_ not modelled 7.0 25 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 57 c3eufC_ not modelled 6.7 54 PDB header:transferase Chain: C: PDB Molecule:uridine phosphorylase 1; PDBTitle: crystal structure of bau-bound human uridine phosphorylase 1 58 d1jv1a_ not modelled 6.6 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 59 d1s3ia2 not modelled 6.6 26 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 60 c1w4xA_ not modelled 6.4 27 PDB header:oxygenase Chain: A: PDB Molecule:phenylacetone monooxygenase; PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase 61 d2f4za1 not modelled 6.4 31 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 62 d1vm8a_ not modelled 6.3 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 63 c2i5kB_ not modelled 6.3 14 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p 64 d1w4xa1 not modelled 6.3 29 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 65 c3q0iA_ not modelled 6.2 14 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from vibrio cholerae 66 d2icya2 not modelled 6.2 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 67 d1vl6a1 not modelled 6.0 42 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 68 c2yr6A_ not modelled 6.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:pro-enzyme of l-phenylalanine oxidase; PDBTitle: crystal structure of l-phenylalanine oxidase from psuedomonas sp.p501 69 d1o0sa1 not modelled 5.9 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 70 c1zghA_ not modelled 5.8 36 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from clostridium thermocellum 71 d2vgna2 not modelled 5.7 29 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:ERF1/Dom34 middle domain-like 72 c3rf1B_ not modelled 5.7 14 PDB header:ligase Chain: B: PDB Molecule:glycyl-trna synthetase alpha subunit; PDBTitle: the crystal structure of glycyl-trna synthetase subunit alpha from2 campylobacter jejuni subsp. jejuni nctc 11168 73 d1gq2a1 not modelled 5.6 37 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 74 c3tqqA_ not modelled 5.6 17 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii 75 c2vkzH_ not modelled 5.6 13 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 76 d1w44a_ not modelled 5.5 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 77 d2igsa1 not modelled 5.5 41 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PA2222-like 78 c3louB_ not modelled 5.1 12 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0