Phyre 2 Results for P12295

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Email | l.a.kelley@imperial.ac.uk
Description | P12295
Date | Thu Jan 5 11:33:09 GMT 2012
Unique Job ID | 87a38d28347ab13b

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d3euga_
Top template information
Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
225 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | N | E | L | T | W | H | D | V | L | A | E | E | K | Q | Q | P | Y | F | L | N | T | L | Q | T | V | A | S | E | R | Q | S | G | V | T | I | Y | P | P | Q | K | D | V | F | N | A | F | R | F | T | E | L | G | D | V | K | V | V | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | G | Q | D | P | Y | H | G | P | G | Q | A | H | G | L | A | F | S | V | R | P | G | I | A | I | P | P | S | L | L | N | M | Y | K | E | L | E | N | T | I | P | G | F | T | R | P | N | H | G | Y | L | E | S | W | A | R | Q | G | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | L | N | T | V | L | T | V | R | A | G | Q | A | H | S | H | A | S | L | G | W | E | T | F | T | D | K | V | I | S | L | I | N | Q | H | R | E | G | V | V | F | L | L | W | G | S | H | A | Q | K | K | G | A | I | I | D | K | Q | R | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | .
Sequence |  | H | V | L | K | A | P | H | P | S | P | L | S | A | H | R | G | F | F | G | C | N | H | F | V | L | A | N | Q | W | L | E | Q | R | G | E | T | P | I | D | W | M | P | V | L | P | A | E | S | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d3euga_ |

### PDB 3eug chain A

Region: 5 - 229
Aligned: 225
Modelled: 225
Confidence: 100.0%
Identity: 99%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Uracil-DNA glycosylase

Phyre2
2 |
| c3tr7A_ |

### PDB 3tr7 chain A

Region: 4 - 223
Aligned: 219
Modelled: 220
Confidence: 100.0%
Identity: 62%
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii

Phyre2
3 |
| d1okba_ |

### PDB 1okb chain A

Region: 2 - 223
Aligned: 221
Modelled: 222
Confidence: 100.0%
Identity: 59%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Uracil-DNA glycosylase

Phyre2
4 |
| d2hxma1 |

### PDB 2hxm chain A domain 1

Region: 2 - 223
Aligned: 221
Modelled: 222
Confidence: 100.0%
Identity: 56%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Uracil-DNA glycosylase

Phyre2
5 |
| c2booA_ |

### PDB 2boo chain A

Region: 2 - 228
Aligned: 225
Modelled: 227
Confidence: 100.0%
Identity: 55%
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung)2 from deinococcus radiodurans.

Phyre2
6 |
| c3cxmA_ |

### PDB 3cxm chain A

Region: 1 - 226
Aligned: 226
Modelled: 226
Confidence: 100.0%
Identity: 48%
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil

Phyre2
7 |
| d1laue_ |

### PDB 1lau chain E

Region: 3 - 222
Aligned: 217
Modelled: 220
Confidence: 100.0%
Identity: 46%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Uracil-DNA glycosylase

Phyre2
8 |
| c2zhxG_ |

### PDB 2zhx chain G

Region: 3 - 223
Aligned: 217
Modelled: 221
Confidence: 100.0%
Identity: 38%
PDB header:hydrolase/hydrolase inhibitor
Chain: G: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor

Phyre2
9 |
| d2j8xa1 |

### PDB 2j8x chain A domain 1

Region: 1 - 222
Aligned: 220
Modelled: 222
Confidence: 100.0%
Identity: 48%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Uracil-DNA glycosylase

Phyre2
10 |
| c2owrD_ |

### PDB 2owr chain D

Region: 4 - 221
Aligned: 195
Modelled: 213
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: D: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase

Phyre2
11 |
| c2rbaB_ |

### PDB 2rba chain B

Region: 54 - 212
Aligned: 150
Modelled: 159
Confidence: 97.0%
Identity: 10%
PDB header:hydrolase/dna
Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna

Phyre2
12 |
| c2c2pA_ |

### PDB 2c2p chain A

Region: 54 - 195
Aligned: 129
Modelled: 142
Confidence: 95.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase;
PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans

Phyre2
13 |
| d1oe4a_ |

### PDB 1oe4 chain A

Region: 57 - 215
Aligned: 149
Modelled: 159
Confidence: 94.7%
Identity: 17%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1

Phyre2
14 |
| d1muga_ |

### PDB 1mug chain A

Region: 54 - 195
Aligned: 132
Modelled: 134
Confidence: 94.7%
Identity: 13%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Mug-like

Phyre2
15 |
| d1ui0a_ |

### PDB 1ui0 chain A

Region: 55 - 212
Aligned: 136
Modelled: 138
Confidence: 94.3%
Identity: 18%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Mug-like

Phyre2
16 |
| c3ikbB_ |

### PDB 3ikb chain B

Region: 57 - 192
Aligned: 117
Modelled: 131
Confidence: 93.6%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159.

Phyre2
17 |
| c2d3yA_ |

### PDB 2d3y chain A

Region: 55 - 192
Aligned: 128
Modelled: 138
Confidence: 92.4%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8

Phyre2
18 |
| d1vk2a_ |

### PDB 1vk2 chain A

Region: 57 - 213
Aligned: 134
Modelled: 146
Confidence: 90.4%
Identity: 20%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Mug-like

Phyre2
19 |
| c2h2wA_ |

### PDB 2h2w chain A

Region: 128 - 168
Aligned: 40
Modelled: 41
Confidence: 50.6%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution

Phyre2
20 |
| c3p9xB_ |

### PDB 3p9x chain B

Region: 140 - 197
Aligned: 55
Modelled: 58
Confidence: 35.1%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d3euga_ |
|  | 100.0 | 99 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
2 | c3tr7A_ |
|  | 100.0 | 62 | PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii
3 | d1okba_ |
|  | 100.0 | 59 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
4 | d2hxma1 |
|  | 100.0 | 56 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
5 | c2booA_ |
|  | 100.0 | 55 | PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung)2 from deinococcus radiodurans.
6 | c3cxmA_ |
|  | 100.0 | 48 | PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil
7 | d1laue_ |
|  | 100.0 | 46 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
8 | c2zhxG_ |
|  | 100.0 | 38 | PDB header:hydrolase/hydrolase inhibitor Chain: G: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor
9 | d2j8xa1 |
|  | 100.0 | 48 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
10 | c2owrD_ |
|  | 100.0 | 20 | PDB header:hydrolase Chain: D: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase
11 | c2rbaB_ |
|  | 97.0 | 10 | PDB header:hydrolase/dna Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna
12 | c2c2pA_ |
|  | 95.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase; PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans
13 | d1oe4a_ |
|  | 94.7 | 17 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
14 | d1muga_ |
|  | 94.7 | 13 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like
15 | d1ui0a_ |
|  | 94.3 | 18 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like
16 | c3ikbB_ |
|  | 93.6 | 23 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159.
17 | c2d3yA_ |
|  | 92.4 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8
18 | d1vk2a_ |
|  | 90.4 | 20 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like
19 | c2h2wA_ |
|  | 50.6 | 18 | PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
20 | c3p9xB_ |
|  | 35.1 | 18 | PDB header:transferase Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans
21 | d1meoa_ |
| not modelled | 32.3 | 20 | Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase
22 | c2l3fA_ |
| not modelled | 30.2 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a putative uracil dna glycosylase from2 methanosarcina acetivorans, northeast structural genomics consortium3 target mvr76
23 | c2ywrA_ |
| not modelled | 30.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus
24 | c3tqrA_ |
| not modelled | 25.7 | 17 | PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii
25 | d1jkxa_ |
| not modelled | 22.1 | 25 | Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase
26 | c3dcjA_ |
| not modelled | 19.5 | 15 | PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative
27 | c3t7hB_ |
| not modelled | 15.6 | 20 | PDB header:ligase Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: atg8 transfer from atg7 to atg3: a distinctive e1-e2 architecture and2 mechanism in the autophagy pathway
28 | c1fmtA_ |
| not modelled | 15.1 | 21 | PDB header:formyltransferase Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase; PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli
29 | d2ghra1 |
| not modelled | 14.4 | 11 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like
30 | c3nrbD_ |
| not modelled | 13.4 | 11 | PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
31 | d2blna2 |
| not modelled | 12.8 | 21 | Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase
32 | d1fmta2 |
| not modelled | 12.3 | 18 | Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase
33 | c2yqsA_ |
| not modelled | 12.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form
34 | c3o1lB_ |
| not modelled | 11.8 | 25 | PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
35 | d1maba2 |
| not modelled | 11.7 | 29 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
36 | d2bw0a2 |
| not modelled | 10.7 | 27 | Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase
37 | c3n0vD_ |
| not modelled | 10.5 | 17 | PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
38 | c3oc9A_ |
| not modelled | 10.4 | 14 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica
39 | c2p2gD_ |
| not modelled | 10.4 | 12 | PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from mycobacterium2 tuberculosis (rv1656): orthorhombic form
40 | d1skyb2 |
| not modelled | 9.8 | 33 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
41 | c3ogzA_ |
| not modelled | 9.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form
42 | c3obiC_ |
| not modelled | 9.4 | 15 | PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution
43 | d1fx0a2 |
| not modelled | 9.4 | 29 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
44 | c1yrwA_ |
| not modelled | 9.3 | 21 | PDB header:transferase Chain: A: PDB Molecule:protein arna; PDBTitle: crystal structure of e.coli arna transformylase domain
45 | c2xrfA_ |
| not modelled | 8.9 | 54 | PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2
46 | c3e35A_ |
| not modelled | 8.5 | 18 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein sco1997; PDBTitle: actinobacteria-specific protein of unknown function, sco1997
47 | d1pj3a1 |
| not modelled | 8.5 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
48 | d2jdia2 |
| not modelled | 8.3 | 29 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
49 | d1q3qa2 |
| not modelled | 8.1 | 26 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain
50 | c3kcqA_ |
| not modelled | 8.1 | 20 | PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum
51 | d1ekxa2 |
| not modelled | 7.9 | 26 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
52 | d2j13a1 |
| not modelled | 7.8 | 9 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase
53 | c1z7eC_ |
| not modelled | 7.6 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna
54 | c2k3mA_ |
| not modelled | 7.2 | 70 | PDB header:membrane protein Chain: A: PDB Molecule:rv1761c; PDBTitle: rv1761c
55 | c2iw0A_ |
| not modelled | 7.2 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum
56 | d1r2aa_ |
| not modelled | 7.0 | 25 | Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
57 | c3eufC_ |
| not modelled | 6.7 | 54 | PDB header:transferase Chain: C: PDB Molecule:uridine phosphorylase 1; PDBTitle: crystal structure of bau-bound human uridine phosphorylase 1
58 | d1jv1a_ |
| not modelled | 6.6 | 14 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
59 | d1s3ia2 |
| not modelled | 6.6 | 26 | Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase
60 | c1w4xA_ |
| not modelled | 6.4 | 27 | PDB header:oxygenase Chain: A: PDB Molecule:phenylacetone monooxygenase; PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
61 | d2f4za1 |
| not modelled | 6.4 | 31 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
62 | d1vm8a_ |
| not modelled | 6.3 | 17 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
63 | c2i5kB_ |
| not modelled | 6.3 | 14 | PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p
64 | d1w4xa1 |
| not modelled | 6.3 | 29 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
65 | c3q0iA_ |
| not modelled | 6.2 | 14 | PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from vibrio cholerae
66 | d2icya2 |
| not modelled | 6.2 | 15 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
67 | d1vl6a1 |
| not modelled | 6.0 | 42 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
68 | c2yr6A_ |
| not modelled | 6.0 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:pro-enzyme of l-phenylalanine oxidase; PDBTitle: crystal structure of l-phenylalanine oxidase from psuedomonas sp.p501
69 | d1o0sa1 |
| not modelled | 5.9 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
70 | c1zghA_ |
| not modelled | 5.8 | 36 | PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from clostridium thermocellum
71 | d2vgna2 |
| not modelled | 5.7 | 29 | Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:ERF1/Dom34 middle domain-like
72 | c3rf1B_ |
| not modelled | 5.7 | 14 | PDB header:ligase Chain: B: PDB Molecule:glycyl-trna synthetase alpha subunit; PDBTitle: the crystal structure of glycyl-trna synthetase subunit alpha from2 campylobacter jejuni subsp. jejuni nctc 11168
73 | d1gq2a1 |
| not modelled | 5.6 | 37 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
74 | c3tqqA_ |
| not modelled | 5.6 | 17 | PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii
75 | c2vkzH_ |
| not modelled | 5.6 | 13 | PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex
76 | d1w44a_ |
| not modelled | 5.5 | 33 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
77 | d2igsa1 |
| not modelled | 5.5 | 41 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PA2222-like
78 | c3louB_ |
| not modelled | 5.1 | 12 | PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0