Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76556
DateThu Jan 5 12:24:35 GMT 2012
Unique Job ID8697e802aab04cfb

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2e87A_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
Confidence and coverage
Confidence: 99.9% Coverage: 97%
154 residues ( 97% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDTPGEYFNHPRWYHALIT
Secondary structure 




















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Disorder  ??



















???????






























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   .........70.........80.........90.........100.........110.........120
Sequence  TLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLETGF
Secondary structure 


























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Disorder 












































?













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   .........130.........140.........150.........
Sequence  EEPMFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE
Secondary structure 













SS confidence 






































Disorder 

























?????????????
Disorder confidence 






































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2e87 chain A

3D model

Region: 1 - 155
Aligned: 154
Modelled: 155
Confidence: 99.9%
Identity: 12%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp

Phyre2

PDB 2qth chain A

3D model

Region: 2 - 148
Aligned: 147
Modelled: 146
Confidence: 99.9%
Identity: 22%
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp

Phyre2

PDB 1mky chain A

3D model

Region: 3 - 156
Aligned: 154
Modelled: 154
Confidence: 99.9%
Identity: 14%
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains

Phyre2

PDB 2hjg chain A

3D model

Region: 3 - 156
Aligned: 154
Modelled: 154
Confidence: 99.9%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp

Phyre2

PDB 3c5h chain A

3D model

Region: 3 - 148
Aligned: 146
Modelled: 146
Confidence: 99.9%
Identity: 16%
PDB header:signaling protein
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap)

Phyre2

PDB 3qq5 chain A

3D model

Region: 1 - 151
Aligned: 150
Modelled: 151
Confidence: 99.9%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf

Phyre2

PDB 2ywf chain A

3D model

Region: 1 - 147
Aligned: 147
Modelled: 147
Confidence: 99.9%
Identity: 16%
PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus

Phyre2

PDB 1g7t chain A

3D model

Region: 1 - 159
Aligned: 159
Modelled: 159
Confidence: 99.9%
Identity: 23%
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp

Phyre2

PDB 3izy chain P

3D model

Region: 4 - 147
Aligned: 144
Modelled: 144
Confidence: 99.9%
Identity: 20%
PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2

Phyre2

PDB 3t1t chain C

3D model

Region: 3 - 149
Aligned: 147
Modelled: 147
Confidence: 99.9%
Identity: 17%
PDB header:hydrolase
Chain: C: PDB Molecule:gliding protein mgla;
PDBTitle: mgla bound to gdp in p1 tetrameric arrangement

Phyre2

PDB 1xzq chain A

3D model

Region: 3 - 155
Aligned: 151
Modelled: 153
Confidence: 99.9%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf

Phyre2

PDB 2wkq chain A

3D model

Region: 3 - 146
Aligned: 144
Modelled: 144
Confidence: 99.9%
Identity: 14%
PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant

Phyre2

PDB 3geh chain A

3D model

Region: 3 - 146
Aligned: 129
Modelled: 132
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn

Phyre2

PDB 2rex chain D

3D model

Region: 3 - 146
Aligned: 144
Modelled: 144
Confidence: 99.9%
Identity: 17%
PDB header:signaling protein/lipoprotein
Chain: D: PDB Molecule:rho-related gtp-binding protein rho6;
PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase

Phyre2

PDB 1wb1 chain C

3D model

Region: 1 - 147
Aligned: 147
Modelled: 147
Confidence: 99.9%
Identity: 17%
PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp

Phyre2

PDB 3lvr chain E

3D model

Region: 3 - 147
Aligned: 145
Modelled: 145
Confidence: 99.9%
Identity: 17%
PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium

Phyre2

PDB 3o47 chain A

3D model

Region: 3 - 147
Aligned: 144
Modelled: 145
Confidence: 99.9%
Identity: 20%
PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein

Phyre2

PDB 3iev chain A

3D model

Region: 1 - 148
Aligned: 148
Modelled: 148
Confidence: 99.9%
Identity: 18%
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna

Phyre2

PDB 1lnz chain A

3D model

Region: 1 - 159
Aligned: 158
Modelled: 158
Confidence: 99.9%
Identity: 17%
PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein

Phyre2

PDB 1svi chain A

3D model

Region: 1 - 148
Aligned: 148
Modelled: 148
Confidence: 99.9%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2
1

c2e87A_
2

c2qthA_
3

c1mkyA_
4

c2hjgA_
5

c3c5hA_
6

c3qq5A_
7

c2ywfA_
8

c1g7tA_
9

c3izyP_
10

c3t1tC_
11

c1xzqA_
12

c2wkqA_
13

c3gehA_
14

c2rexD_
15

c1wb1C_
16

c3lvrE_
17

c3o47A_
18

c3ievA_
19

c1lnzA_
20

d1svia_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2e87A_



99.9 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
2c2qthA_



99.9 22 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
3c1mkyA_



99.9 14 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
4c2hjgA_



99.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
5c3c5hA_



99.9 16 PDB header:signaling protein
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap)
6c3qq5A_



99.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
7c2ywfA_



99.9 16 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
8c1g7tA_



99.9 23 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
9c3izyP_



99.9 20 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
10c3t1tC_



99.9 17 PDB header:hydrolase
Chain: C: PDB Molecule:gliding protein mgla;
PDBTitle: mgla bound to gdp in p1 tetrameric arrangement
11c1xzqA_



99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
12c2wkqA_



99.9 14 PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant
13c3gehA_



99.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
14c2rexD_



99.9 17 PDB header:signaling protein/lipoprotein
Chain: D: PDB Molecule:rho-related gtp-binding protein rho6;
PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase
15c1wb1C_



99.9 17 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
16c3lvrE_



99.9 17 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
17c3o47A_



99.9 20 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
18c3ievA_



99.9 18 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
19c1lnzA_



99.9 17 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
20d1svia_



99.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
21c1zo1I_



not modelled 99.9 19 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
22c3degC_



not modelled 99.9 12 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
23d1wb1a4



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
24c3lx8A_



not modelled 99.8 22 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
25c1wf3A_



not modelled 99.8 22 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
26c1kk3A_



not modelled 99.8 24 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
27c1udxA_



not modelled 99.8 18 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
28c1gwnA_



not modelled 99.8 15 PDB header:gtpase
Chain: A: PDB Molecule:rho-related gtp-binding protein rhoe;
PDBTitle: the crystal structure of the core domain of rhoe/rnd3 - a2 constitutively activated small g protein
29c2h18A_



not modelled 99.8 14 PDB header:transport protein
Chain: A: PDB Molecule:adp-ribosylation factor-like protein 8a;
PDBTitle: structure of human adp-ribosylation factor-like 10b (arl10b)
30c2dykB_



not modelled 99.8 15 PDB header:ribosome
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8
31d1m7ba_



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
32d2g3ya1



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
33c2g3yA_



not modelled 99.8 19 PDB header:signaling protein
Chain: A: PDB Molecule:gtp-binding protein gem;
PDBTitle: crystal structure of the human small gtpase gem
34d1puia_



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
35d1ctqa_



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
36c1egaB_



not modelled 99.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
37c3conA_



not modelled 99.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:gtpase nras;
PDBTitle: crystal structure of the human nras gtpase bound with gdp
38c3bwdD_



not modelled 99.8 15 PDB header:plant protein
Chain: D: PDB Molecule:rac-like gtp-binding protein arac6;
PDBTitle: crystal structure of the plant rho protein rop5
39c2wjjB_



not modelled 99.8 18 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b homolog;
PDBTitle: structure and function of the feob g-domain from2 methanococcus jannaschii
40d2gjsa1



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
41d1g16a_



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
42c2x77B_



not modelled 99.8 18 PDB header:gtp-binding protein
Chain: B: PDB Molecule:adp-ribosylation factor;
PDBTitle: crystal structure of leishmania major adp ribosylation2 factor-like 1.
43c2nzjB_



not modelled 99.8 19 PDB header:signaling protein
Chain: B: PDB Molecule:gtp-binding protein rem 1;
PDBTitle: the crystal structure of rem1 in complex with gdp
44d1x3sa1



not modelled 99.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
45d2bcgy1



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
46d1ksha_



not modelled 99.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
47c2qu8A_



not modelled 99.8 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
48c2oilA_



not modelled 99.8 12 PDB header:protein transport
Chain: A: PDB Molecule:ras-related protein rab-25;
PDBTitle: crystal structure of human rab25 in complex with gdp
49c3a1wA_



not modelled 99.8 23 PDB header:transport protein
Chain: A: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the g domain of t. maritima feob iron2 iransporter
50d1z2ca1



not modelled 99.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
51d2ngra_



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
52d1mkya1



not modelled 99.8 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
53d1x1ra1



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
54d1kmqa_



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
55c2wsmB_



not modelled 99.8 17 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
56d1ds6a_



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
57d1z0ja1



not modelled 99.8 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
58d2fg5a1



not modelled 99.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
59c2fg5A_



not modelled 99.8 10 PDB header:signaling protein
Chain: A: PDB Molecule:ras-related protein rab-31;
PDBTitle: crystal structure of human rab31 in complex with a gtp2 analogue
60c2bovA_



not modelled 99.8 11 PDB header:transferase
Chain: A: PDB Molecule:ras-related protein ral-a;
PDBTitle: molecular recognition of an adp-ribosylating clostridium2 botulinum c3 exoenzyme by rala gtpase
61d1fzqa_



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
62d1r8qa_



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
63c3cphA_



not modelled 99.8 18 PDB header:protein transport
Chain: A: PDB Molecule:ras-related protein sec4;
PDBTitle: crystal structure of sec4 in complex with rab-gdi
64d2a5ja1



not modelled 99.8 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
65c2zejA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:leucine-rich repeat kinase 2;
PDBTitle: structure of the roc domain from the parkinson's disease-associated2 leucine-rich repeat kinase 2 reveals a dimeric gtpase
66d2f9la1



not modelled 99.8 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
67d2erya1



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
68c2plfA_



not modelled 99.8 22 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
69c3q85B_



not modelled 99.8 18 PDB header:signaling protein
Chain: B: PDB Molecule:gtp-binding protein rem 2;
PDBTitle: crystal structure of rem2 g-domain -gtp analog complex
70c3i8sC_



not modelled 99.8 25 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
71d1kaoa_



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
72c3oesA_



not modelled 99.8 14 PDB header:hydrolase
Chain: A: PDB Molecule:gtpase rhebl1;
PDBTitle: crystal structure of the small gtpase rhebl1
73d1svsa1



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
74d1r8sa_



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
75d2erxa1



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
76d2atxa1



not modelled 99.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
77d2bmea1



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
78c2gf0C_



not modelled 99.8 15 PDB header:transport protein
Chain: C: PDB Molecule:gtp-binding protein di-ras1;
PDBTitle: the crystal structure of the human diras1 gtpase in the2 inactive gdp bound state
79d2gf0a1



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
80c3cbqA_



not modelled 99.8 16 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein rem 2;
PDBTitle: crystal structure of the human rem2 gtpase with bound gdp
81d1vg8a_



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
82c2f7sA_



not modelled 99.8 18 PDB header:signaling protein
Chain: A: PDB Molecule:ras-related protein rab-27b;
PDBTitle: the crystal structure of human rab27b bound to gdp
83d2f7sa1



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
84d1i2ma_



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
85c3tw8B_



not modelled 99.8 17 PDB header:protein transport
Chain: B: PDB Molecule:ras-related protein rab-35;
PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35
86c3a1vB_



not modelled 99.8 26 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
87d1upta_



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
88c1m2oD_



not modelled 99.8 22 PDB header:protein transport/signaling protein
Chain: D: PDB Molecule:gtp-binding protein sar1;
PDBTitle: crystal structure of the sec23-sar1 complex
89c3doeA_



not modelled 99.8 15 PDB header:signaling protein/hydrolase
Chain: A: PDB Molecule:adp-ribosylation factor-like protein 2;
PDBTitle: complex of arl2 and bart, crystal form 1
90d2dy1a2



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
91d1c1ya_



not modelled 99.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
92d2cxxa1



not modelled 99.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
93d2fh5b1



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
94d1u8za_



not modelled 99.8 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
95c3c5cC_



not modelled 99.8 14 PDB header:signaling protein
Chain: C: PDB Molecule:ras-like protein 12;
PDBTitle: crystal structure of human ras-like, family 12 protein in2 complex with gdp
96d1z0aa1



not modelled 99.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
97d1mr3f_



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
98d1z0fa1



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
99d1moza_



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
100c3pqcA_



not modelled 99.8 19 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
101c1zbdA_



not modelled 99.8 17 PDB header:g protein
Chain: A: PDB Molecule:rabphilin-3a;
PDBTitle: structural basis of rab effector specificity: crystal2 structure of the small g protein rab3a complexed with the3 effector domain of rabphilin-3a
102d1zd9a1



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
103d1z6xa1



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
104d1mkya2



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
105c3k53B_



not modelled 99.8 21 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
106d1tada2



not modelled 99.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
107d1zunb3



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
108d1yzga1



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
109d1yzna1



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
110c2p5sB_



not modelled 99.8 14 PDB header:signaling protein
Chain: B: PDB Molecule:ras and ef-hand domain containing;
PDBTitle: rab domain of human rasef in complex with gdp
111d2ew1a1



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
112c2ew1A_



not modelled 99.8 18 PDB header:signaling protein
Chain: A: PDB Molecule:ras-related protein rab-30;
PDBTitle: crystal structure of rab30 in complex with a gtp analogue
113c3cpjB_



not modelled 99.8 13 PDB header:protein transport
Chain: B: PDB Molecule:gtp-binding protein ypt31/ypt8;
PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi
114d1ky3a_



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
115d1zcaa2



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
116d1zj6a1



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
117d2d7ca1



not modelled 99.8 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
118d2b6ha1



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
119d2al7a1



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
120d1lnza2



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0