Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	E	F	D	N	L	T	Y	L	H	G	K	P	Q	G	T	G	L	L	K	A	N	P	E	D	F	V	V	V	E	D	L	G	F	E	P	D	G	E	G	E	H	I	L	V	R	I	L	K	N	G	C	N	T	R	F	V	A	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	L	A	K	F	L	K	I	H	A	R	E	V	S	F	A	G	Q	K	D	K	H	A	V	T	E	Q	W	L	C	A	R	V	P	G	K	E	M	P	D	L	S	A	F	Q	L	E	G	C	Q	V	L	E	Y	A	R	H	K	R	K
Secondary structure
SS confidence
Disorder																																					?	?						?														?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	R	L	G	A	L	K	G	N	A	F	T	L	V	L	R	E	V	S	N	R	D	D	V	E	Q	R	L	I	D	I	C	V	K	G	V	P	N	Y	F	G	A	Q	R	F	G	I	G	G	S	N	L	Q	G	A	Q	R	W	A	Q
Secondary structure
SS confidence
Disorder																																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	N	T	P	V	R	D	R	N	K	R	S	F	W	L	S	A	A	R	S	A	L	F	N	Q	I	V	A	E	R	L	K	K	A	D	V	N	Q	V	V	D	G	D	A	L	Q	L	A	G	R	G	S	W	F	V	A	T	T	E	E
Secondary structure
SS confidence
Disorder				?	?	?	?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	A	E	L	Q	R	R	V	N	D	K	E	L	M	I	T	A	A	L	P	G	S	G	E	W	G	T	Q	R	E	A	L	A	F	E	Q	A	A	V	A	A	E	T	E	L	Q	A	L	L	V	R	E	K	V	E	A	A	R	R	A
Secondary structure
SS confidence
Disorder																								?		?	?		?																	?						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Sequence		M	L	L	Y	P	Q	Q	L	S	W	N	W	W	D	D	V	T	V	E	I	R	F	W	L	P	A	G	S	F	A	T	S	V	V	R	E	L	I	N	T	T	G	D	Y	A	H	I	A	E
Secondary structure
SS confidence
Disorder																																												?	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sb7 chain A Region: 1 - 341 Aligned: 341 Modelled: 339 Confidence: 100.0% Identity: 99% PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud Phyre2 PDB 1szw chain A Region: 1 - 341 Aligned: 334 Modelled: 340 Confidence: 100.0% Identity: 99% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: tRNA pseudouridine synthase TruD Phyre2 PDB 1z2z chain B Region: 9 - 342 Aligned: 332 Modelled: 334 Confidence: 100.0% Identity: 26% PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 Phyre2 PDB 1k8w chain A domain 5 Region: 45 - 151 Aligned: 101 Modelled: 107 Confidence: 86.5% Identity: 12% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1r3e chain A domain 2 Region: 45 - 119 Aligned: 73 Modelled: 75 Confidence: 84.1% Identity: 16% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 2cx6 chain A domain 1 Region: 128 - 161 Aligned: 32 Modelled: 33 Confidence: 83.6% Identity: 16% Fold: Barstar-like Superfamily: Barstar-related Family: Barstar-related Phyre2 PDB 1sgv chain A Region: 45 - 151 Aligned: 102 Modelled: 107 Confidence: 81.8% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) Phyre2 PDB 2ey4 chain A domain 2 Region: 21 - 115 Aligned: 93 Modelled: 95 Confidence: 81.6% Identity: 17% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 2apo chain A domain 2 Region: 45 - 119 Aligned: 73 Modelled: 75 Confidence: 78.3% Identity: 16% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1sgv chain A domain 2 Region: 40 - 151 Aligned: 107 Modelled: 109 Confidence: 75.0% Identity: 15% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1k8w chain A Region: 45 - 151 Aligned: 101 Modelled: 107 Confidence: 72.8% Identity: 11% PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna Phyre2 PDB 1ze2 chain B Region: 43 - 83 Aligned: 39 Modelled: 41 Confidence: 68.4% Identity: 33% PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate Phyre2 PDB 1ay7 chain B Region: 130 - 161 Aligned: 30 Modelled: 32 Confidence: 62.7% Identity: 20% Fold: Barstar-like Superfamily: Barstar-related Family: Barstar-related Phyre2 PDB 2apo chain A Region: 45 - 119 Aligned: 73 Modelled: 75 Confidence: 53.9% Identity: 16% PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex Phyre2 PDB 3uai chain A Region: 42 - 115 Aligned: 72 Modelled: 74 Confidence: 48.5% Identity: 10% PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae Phyre2 PDB 2ey4 chain A Region: 43 - 115 Aligned: 71 Modelled: 73 Confidence: 43.6% Identity: 13% PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex Phyre2 PDB 1yh5 chain A domain 1 Region: 51 - 82 Aligned: 32 Modelled: 32 Confidence: 38.7% Identity: 19% Fold: YggU-like Superfamily: YggU-like Family: YggU-like Phyre2 PDB 1lld chain A domain 2 Region: 51 - 73 Aligned: 23 Modelled: 23 Confidence: 33.0% Identity: 9% Fold: LDH C-terminal domain-like Superfamily: LDH C-terminal domain-like Family: Lactate & malate dehydrogenases, C-terminal domain Phyre2 PDB 2dce chain A Region: 135 - 159 Aligned: 25 Modelled: 25 Confidence: 31.2% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1915 protein; PDBTitle: solution structure of the swirm domain of human kiaa19152 protein Phyre2 PDB 2j85 chain A domain 1 Region: 116 - 163 Aligned: 48 Modelled: 48 Confidence: 30.7% Identity: 13% Fold: STIV B116-like Superfamily: STIV B116-like Family: STIV B116-like Phyre2 1 c1sb7A_ 2 d1szwa_ 3 c1z2zB_ 4 d1k8wa5 5 d1r3ea2 6 d2cx6a1 7 c1sgvA_ 8 d2ey4a2 9 d2apoa2 10 d1sgva2 11 c1k8wA_ 12 c1ze2B_ 13 d1ay7b_ 14 c2apoA_ 15 c3uaiA_ 16 c2ey4A_ 17 d1yh5a1 18 d1llda2 19 c2dceA_ 20 d2j85a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1sb7A_ 100.0 99 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud 2 d1szwa_ 100.0 99 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:tRNA pseudouridine synthase TruD 3 c1z2zB_ 100.0 26 PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 4 d1k8wa5 86.5 12 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 5 d1r3ea2 84.1 16 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 6 d2cx6a1 83.6 16 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 7 c1sgvA_ 81.8 16 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 8 d2ey4a2 81.6 17 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 9 d2apoa2 78.3 16 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 10 d1sgva2 75.0 15 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 11 c1k8wA_ 72.8 11 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 12 c1ze2B_ 68.4 33 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 13 d1ay7b_ 62.7 20 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 14 c2apoA_ 53.9 16 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 15 c3uaiA_ 48.5 10 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 16 c2ey4A_ 43.6 13 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 17 d1yh5a1 38.7 19 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 18 d1llda2 33.0 9 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 19 c2dceA_ 31.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1915 protein; PDBTitle: solution structure of the swirm domain of human kiaa19152 protein 20 d2j85a1 30.7 13 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 21 d1mlda2 not modelled 26.9 13 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 22 c2km1A_ not modelled 26.6 19 PDB header:protein binding Chain: A: PDB Molecule:protein dre2; PDBTitle: solution structure of the n-terminal domain of the yeast protein dre2 23 d5mdha2 not modelled 26.3 14 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 24 d1utaa_ not modelled 26.2 15 Fold:Ferredoxin-like Superfamily:Sporulation related repeat Family:Sporulation related repeat 25 d1t2da2 not modelled 26.2 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 26 d2j6ba1 not modelled 26.0 14 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 27 d1oc4a2 not modelled 25.8 18 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 28 c3kopB_ not modelled 25.5 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution 29 d1ez4a2 not modelled 25.4 22 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 30 d1b8pa2 not modelled 25.2 5 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 31 d1hyha2 not modelled 25.0 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 32 c2v9vA_ not modelled 24.9 15 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 33 d7mdha2 not modelled 24.7 18 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 34 c2kvrA_ not modelled 24.6 5 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7; PDBTitle: solution nmr structure of human ubiquitin specific protease2 usp7 ubl domain (residues 537-664). nesg target hr4395c/3 sgc-toronto 35 d1gv0a2 not modelled 24.6 14 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 36 c3hskB_ not modelled 24.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 with nadp from candida albicans 37 d1obba2 not modelled 24.2 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:AglA-like glucosidase 38 d9ldta2 not modelled 24.2 10 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 39 d2cmda2 not modelled 24.0 13 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 40 d1guza2 not modelled 22.9 10 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 41 d1o6za2 not modelled 22.4 9 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 42 c3f1xA_ not modelled 21.7 12 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62. 43 d1uxja2 not modelled 21.3 10 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 44 d1pzga2 not modelled 21.2 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 45 d1civa2 not modelled 21.1 18 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 46 d1hyea2 not modelled 21.1 32 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 47 c3mpoD_ not modelled 21.0 15 PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis 48 d1y7ta2 not modelled 21.0 14 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 49 d1i0za2 not modelled 21.0 17 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 50 d1ldma2 not modelled 20.9 10 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 51 d2dw4a1 not modelled 20.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 52 c3lhoA_ not modelled 20.8 17 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative hydrolase (yp_751971.1) from shewanella2 frigidimarina ncimb 400 at 1.80 a resolution 53 d1zpwx1 not modelled 20.8 10 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 54 d1w4xa1 not modelled 20.6 67 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 55 d2nn4a1 not modelled 20.1 25 Fold:YqgQ-like Superfamily:YqgQ-like Family:YqgQ-like 56 d1ldna2 not modelled 19.7 14 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 57 d1a5za2 not modelled 19.7 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 58 d1llca2 not modelled 19.7 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 59 d1i10a2 not modelled 19.1 10 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 60 d2pg4a1 not modelled 19.0 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F93-like 61 c3cjlA_ not modelled 18.6 24 PDB header:unknown function Chain: A: PDB Molecule:domain of unknown function; PDBTitle: crystal structure of a protein of unknown function (eca1910) from2 pectobacterium atrosepticum scri1043 at 2.20 a resolution 62 d2fq3a1 not modelled 17.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 63 d2dkya1 not modelled 17.3 18 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 64 d2g17a1 not modelled 17.0 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 65 d1vkna1 not modelled 16.9 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 66 d2h80a1 not modelled 16.6 18 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 67 c2hjsA_ not modelled 16.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usg-1 protein homolog; PDBTitle: the structure of a probable aspartate-semialdehyde dehydrogenase from2 pseudomonas aeruginosa 68 d2v9va2 not modelled 16.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 69 d2hjsa1 not modelled 16.0 0 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 70 c2zv3E_ not modelled 15.6 13 PDB header:hydrolase Chain: E: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661 71 d2ox7a1 not modelled 15.4 45 Fold:YopX-like Superfamily:YopX-like Family:YopX-like 72 d2ldxa2 not modelled 15.4 5 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 73 c3kubA_ not modelled 15.2 0 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semi-aldehyde dehydrogenase complexed2 with glycerol and phosphate of mycobacterium tuberculosis h37rv 74 c1mb4B_ not modelled 14.9 0 PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 from vibrio cholerae with nadp and s-methyl-l-cysteine3 sulfoxide 75 d1y6ja2 not modelled 14.7 14 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 76 d2q49a1 not modelled 14.7 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 77 c3h92A_ not modelled 14.3 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized atp-binding protein mjecl15; PDBTitle: the crystal structure of one domain of the protein with unknown2 function from methanocaldococcus jannaschii 78 c2x4iA_ not modelled 13.9 16 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein 114; PDBTitle: orf 114a from sulfolobus islandicus rudivirus 1 79 d2cvoa1 not modelled 13.8 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 80 c3nwiC_ not modelled 13.3 12 PDB header:transport protein Chain: C: PDB Molecule:zinc transport protein zntb; PDBTitle: the soluble domain structure of the zntb zn2+ efflux system 81 d1qlma_ not modelled 13.2 8 Fold:Methenyltetrahydromethanopterin cyclohydrolase Superfamily:Methenyltetrahydromethanopterin cyclohydrolase Family:Methenyltetrahydromethanopterin cyclohydrolase 82 c3t76A_ not modelled 13.2 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 83 d2dt5a1 not modelled 13.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional repressor Rex, N-terminal domain 84 c1t4bB_ not modelled 12.9 0 PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: 1.6 angstrom structure of esherichia coli aspartate-2 semialdehyde dehydrogenase. 85 d2p84a1 not modelled 12.6 33 Fold:YopX-like Superfamily:YopX-like Family:YopX-like 86 d2hjja1 not modelled 12.2 33 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YkfF-like 87 c2hjjA_ not modelled 12.2 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ykff; PDBTitle: solution nmr structure of protein ykff from escherichia coli.2 northeast structural genomics target er397. 88 c3ofeB_ not modelled 12.1 11 PDB header:chaperone Chain: B: PDB Molecule:ldlr chaperone boca; PDBTitle: structured domain of drosophila melanogaster boca p41 2 2 crystal form 89 c1jegB_ not modelled 12.1 67 PDB header:transferase/hydrolase Chain: B: PDB Molecule:hematopoietic cell protein-tyrosine phosphatase PDBTitle: solution structure of the sh3 domain from c-terminal src2 kinase complexed with a peptide from the tyrosine3 phosphatase pep 90 d1xrsb2 not modelled 12.0 44 Fold:Dodecin subunit-like Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 91 c2gz3D_ not modelled 11.8 0 PDB header:oxidoreductase Chain: D: PDB Molecule:aspartate beta-semialdehyde dehydrogenase; PDBTitle: structure of aspartate semialdehyde dehydrogenase (asadh) from2 streptococcus pneumoniae complexed with nadp and aspartate-3 semialdehyde 92 c2qyzA_ not modelled 11.6 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the uncharacterized protein ctc02137 from2 clostridium tetani e88 93 d1up7a2 not modelled 11.5 10 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:AglA-like glucosidase 94 d1s6ya2 not modelled 11.5 38 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:AglA-like glucosidase 95 c3uw3A_ not modelled 10.7 0 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of an aspartate-semialdehyde dehydrogenase from2 burkholderia thailandensis 96 c2wh7A_ not modelled 10.5 38 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-phage associated; PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2 97 c2i9sA_ not modelled 9.9 21 PDB header:chaperone Chain: A: PDB Molecule:mesoderm development candidate 2; PDBTitle: the solution structure of the core of mesoderm development2 (mesd). 98 c2w3pB_ not modelled 9.6 36 PDB header:lyase Chain: B: PDB Molecule:benzoyl-coa-dihydrodiol lyase; PDBTitle: boxc crystal structure 99 c3gwdA_ not modelled 9.3 44 PDB header:oxidoreductase Chain: A: PDB Molecule:cyclohexanone monooxygenase; PDBTitle: closed crystal structure of cyclohexanone monooxygenase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0