Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	A	S	L	A	L	L	S	L	L	T	A	F	T	S	H	S	L	K	S	P	A	V	P	P	T	V	V	Q	I	Q	A	N	T	N	L	A	I	A	D	G	A	R	Q	Q	I	G	S	T	L	F	Y	D	P	A	Y	V	Q	L
Secondary structure
SS confidence
Disorder		?	?	?															?	?	?	?	?			?		?	?		?	?	?	?	?	?	?											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	Y	P	G	G	D	V	P	Q	E	R	G	V	C	S	D	V	V	I	R	A	L	R	S	Q	K	V	D	L	Q	K	L	V	H	E	D	M	A	K	N	F	A	E	Y	P	Q	K	W	K	L	K	R	P	D	S	N	I	D	H	R
Secondary structure
SS confidence
Disorder				?																																										?						?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	V	P	N	L	E	T	W	F	S	R	H	D	K	T	R	P	T	S	K	N	P	S	D	Y	Q	A	G	D	I	V	S	W	R	L	D	N	G	L	A	H	I	G	V	V	S	D	G	F	A	R	D	G	T	P	L	V	I	H	N
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence		I	G	A	G	A	Q	E	E	D	V	L	F	N	W	R	M	V	G	H	Y	R	Y	F	V	K
Secondary structure
SS confidence
Disorder																									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2k1g chain A Region: 36 - 203 Aligned: 115 Modelled: 127 Confidence: 96.6% Identity: 26% PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 Phyre2 PDB 2evr chain A domain 2 Region: 37 - 185 Aligned: 95 Modelled: 112 Confidence: 95.4% Identity: 22% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: NlpC/P60 Phyre2 PDB 3pbi chain A Region: 38 - 194 Aligned: 113 Modelled: 113 Confidence: 95.3% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution Phyre2 PDB 3gt2 chain A Region: 37 - 203 Aligned: 112 Modelled: 130 Confidence: 95.0% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c Phyre2 PDB 3npf chain B Region: 34 - 182 Aligned: 98 Modelled: 104 Confidence: 94.6% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution Phyre2 PDB 3i86 chain A Region: 37 - 201 Aligned: 120 Modelled: 131 Confidence: 94.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 Phyre2 PDB 2xiv chain A Region: 38 - 186 Aligned: 95 Modelled: 112 Confidence: 93.6% Identity: 25% PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis Phyre2 PDB 3h41 chain A Region: 18 - 203 Aligned: 133 Modelled: 137 Confidence: 93.5% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution Phyre2 PDB 2fg0 chain B Region: 74 - 183 Aligned: 67 Modelled: 73 Confidence: 91.6% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution Phyre2 PDB 2if6 chain A domain 1 Region: 10 - 89 Aligned: 70 Modelled: 80 Confidence: 85.6% Identity: 17% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: YiiX-like Phyre2 PDB 2p1g chain A Region: 146 - 204 Aligned: 56 Modelled: 59 Confidence: 83.6% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis Phyre2 PDB 2io8 chain A domain 2 Region: 146 - 179 Aligned: 32 Modelled: 34 Confidence: 70.5% Identity: 13% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: CHAP domain Phyre2 PDB 3kw0 chain D Region: 64 - 89 Aligned: 26 Modelled: 26 Confidence: 69.4% Identity: 19% PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution Phyre2 PDB 2vpm chain B Region: 146 - 167 Aligned: 22 Modelled: 22 Confidence: 63.3% Identity: 14% PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase Phyre2 PDB 2k3a chain A Region: 146 - 179 Aligned: 32 Modelled: 34 Confidence: 57.9% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 Phyre2 PDB 3obc chain B Region: 74 - 106 Aligned: 33 Modelled: 33 Confidence: 57.2% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:pyrophosphatase; PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution Phyre2 PDB 3m1u chain B Region: 125 - 181 Aligned: 54 Modelled: 56 Confidence: 55.9% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution Phyre2 PDB 2ioa chain A Region: 146 - 167 Aligned: 22 Modelled: 22 Confidence: 53.7% Identity: 18% PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor Phyre2 PDB 3isr chain B Region: 32 - 87 Aligned: 52 Modelled: 56 Confidence: 53.3% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease; PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a Phyre2 PDB 1rqg chain A Region: 60 - 104 Aligned: 45 Modelled: 45 Confidence: 53.3% Identity: 29% PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from pyrococcus abyssi Phyre2 1 c2k1gA_ 2 d2evra2 3 c3pbiA_ 4 c3gt2A_ 5 c3npfB_ 6 c3i86A_ 7 c2xivA_ 8 c3h41A_ 9 c2fg0B_ 10 d2if6a1 11 c2p1gA_ 12 d2io8a2 13 c3kw0D_ 14 c2vpmB_ 15 c2k3aA_ 16 c3obcB_ 17 c3m1uB_ 18 c2ioaA_ 19 c3isrB_ 20 c1rqgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k1gA_ 96.6 26 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 2 d2evra2 95.4 22 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 3 c3pbiA_ 95.3 20 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 4 c3gt2A_ 95.0 15 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 5 c3npfB_ 94.6 21 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 6 c3i86A_ 94.2 18 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 7 c2xivA_ 93.6 25 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 8 c3h41A_ 93.5 14 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 9 c2fg0B_ 91.6 24 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 10 d2if6a1 85.6 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 11 c2p1gA_ 83.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 12 d2io8a2 70.5 13 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 13 c3kw0D_ 69.4 19 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 14 c2vpmB_ 63.3 14 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 15 c2k3aA_ 57.9 28 PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 16 c3obcB_ 57.2 27 PDB header:hydrolase Chain: B: PDB Molecule:pyrophosphatase; PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution 17 c3m1uB_ 55.9 24 PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution 18 c2ioaA_ 53.7 18 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 19 c3isrB_ 53.3 15 PDB header:hydrolase Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease; PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a 20 c1rqgA_ 53.3 29 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from pyrococcus abyssi 21 d2a3qa1 not modelled 49.5 34 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 22 c2q4pA_ not modelled 49.5 34 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898 23 d1nx4a_ not modelled 46.5 22 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 24 d1bqka_ not modelled 42.5 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 25 c3r1jB_ not modelled 40.9 33 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 26 d1otja_ not modelled 40.9 44 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 27 c3pvjB_ not modelled 38.9 33 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 28 c2kytA_ not modelled 38.0 16 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 29 c3eatX_ not modelled 36.2 22 PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa 30 d1y0za_ not modelled 35.3 33 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 31 d1oiha_ not modelled 35.2 44 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 32 d1pmya_ not modelled 34.9 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 33 d1ilea3 not modelled 33.6 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 34 d1plaa_ not modelled 32.6 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 35 c2x1lC_ not modelled 32.3 30 PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine 36 c2ct8A_ not modelled 32.1 26 PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue 37 d2d5ba2 not modelled 31.6 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 38 d1pfva2 not modelled 31.4 30 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 39 d1kdja_ not modelled 31.0 31 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 40 d1rqga2 not modelled 30.7 31 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 41 c3kflA_ not modelled 25.2 22 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: leishmania major methionyl-trna synthetase in complex with2 methionyladenylate and pyrophosphate 42 d2jxma1 not modelled 24.4 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 43 c2zouB_ not modelled 24.4 15 PDB header:cell adhesion Chain: B: PDB Molecule:spondin-1; PDBTitle: crystal struture of human f-spondin reeler domain (fragment 2) 44 d1pcsa_ not modelled 23.5 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 45 d1wspa1 not modelled 23.0 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:DIX domain 46 d7pcya_ not modelled 22.4 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 47 d1bvp12 not modelled 21.4 45 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 48 d9pcya_ not modelled 20.8 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 49 d1ahsa_ not modelled 20.5 26 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 50 d1h3na3 not modelled 20.3 31 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 51 d1mgta2 not modelled 19.7 23 Fold:Ribonuclease H-like motif Superfamily:Methylated DNA-protein cysteine methyltransferase domain Family:Methylated DNA-protein cysteine methyltransferase domain 52 d1bypa_ not modelled 19.2 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 53 d1paza_ not modelled 18.6 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 54 c1pfuA_ not modelled 18.1 30 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from escherichia coli complexed2 with methionine phosphinate 55 d2etna2 not modelled 17.9 29 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 56 d1ag6a_ not modelled 17.9 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 57 d2oiea1 not modelled 17.5 38 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 58 c1woyA_ not modelled 16.5 22 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of methionyl trna synthetase y225f mutant2 from thermus thermophilus 59 c2im9A_ not modelled 16.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 60 d2im9a1 not modelled 16.2 13 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like 61 c2x35A_ not modelled 15.8 20 PDB header:transcription Chain: A: PDB Molecule:peregrin; PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp2 domain of brpf1. 62 d1plca_ not modelled 15.8 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 63 d1ivsa4 not modelled 15.3 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 64 d2nlua1 not modelled 15.1 14 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 65 d2f23a2 not modelled 15.1 29 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 66 d1h3za_ not modelled 15.0 15 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 67 c2wbqA_ not modelled 14.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 68 d1xcca_ not modelled 14.5 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 69 c2og5A_ not modelled 14.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 70 c2etnA_ not modelled 14.2 29 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 71 d1iuza_ not modelled 13.9 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 72 c3ms5A_ not modelled 13.9 22 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) 73 c3lyiA_ not modelled 13.9 9 PDB header:transcription Chain: A: PDB Molecule:bromodomain-containing protein 1; PDBTitle: pwwp domain of human bromodomain-containing protein 1 74 c3o82B_ not modelled 13.8 14 PDB header:ligase Chain: B: PDB Molecule:peptide arylation enzyme; PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine 75 c2l8kA_ not modelled 13.0 35 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 7; PDBTitle: nmr structure of the arterivirus nonstructural protein 7 alpha (nsp72 alpha) 76 c2v2gC_ not modelled 12.9 26 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxiredoxin 6; PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form 77 d1te7a_ not modelled 12.8 31 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 78 c3pfsA_ not modelled 12.6 9 PDB header:protein binding Chain: A: PDB Molecule:bromodomain and phd finger-containing protein 3; PDBTitle: pwwp domain of human bromodomain and phd finger-containing protein 3 79 c2q9lA_ not modelled 12.4 22 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 80 d1ds1a_ not modelled 12.3 22 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 81 d1ffya3 not modelled 12.2 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 82 c2l3oA_ not modelled 11.7 33 PDB header:cytokine Chain: A: PDB Molecule:interleukin 3; PDBTitle: solution structure of murine interleukin 3 83 c1u0bB_ not modelled 11.6 28 PDB header:ligase/rna Chain: B: PDB Molecule:cysteinyl trna; PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys 84 c2wkdA_ not modelled 11.5 57 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 85 d2q5ba1 not modelled 11.5 31 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 86 d1em8a_ not modelled 11.0 25 Fold:DNA polymerase III chi subunit Superfamily:DNA polymerase III chi subunit Family:DNA polymerase III chi subunit 87 c2l53B_ not modelled 11.0 38 PDB header:ca-binding protein/proton transport Chain: B: PDB Molecule:voltage-gated sodium channel type v alpha isoform b PDBTitle: solution nmr structure of apo-calmodulin in complex with the iq motif2 of human cardiac sodium channel nav1.5 88 c2p4vA_ not modelled 10.6 24 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 89 c3exmA_ not modelled 10.1 29 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp 90 c3ca8B_ not modelled 9.6 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 91 d2cj3a1 not modelled 9.0 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 92 d1qcsa1 not modelled 8.7 30 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 93 d1prxa_ not modelled 8.5 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 94 c2kxwB_ not modelled 8.3 33 PDB header:calcium-binding protein/metal transport Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha; PDBTitle: structure of the c-domain fragment of apo calmodulin bound to the iq2 motif of nav1.2 95 d1li5a2 not modelled 8.2 31 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 96 c1obhA_ not modelled 8.1 31 PDB header:synthetase Chain: A: PDB Molecule:leucyl-trna synthetase; PDBTitle: leucyl-trna synthetase from thermus thermophilus complexed2 with a pre-transfer editing substrate analogue in both3 synthetic active site and editing site 97 c2rfpA_ not modelled 8.1 18 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 98 c1ileA_ not modelled 8.1 11 PDB header:aminoacyl-trna synthetase Chain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: isoleucyl-trna synthetase 99 d1bxua_ not modelled 7.9 44 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0