Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Y	K	H	I	L	I	A	V	D	L	S	P	E	S	K	V	L	V	E	K	A	V	S	M	A	R	P	Y	N	A	K	V	S	L	I	H	V	D	V	N	Y	S	D	L	Y	T	G	L	I	D	V	N	L	G	D	M	Q	K
Secondary structure
SS confidence
Disorder		?	?	?																																								?	?	?	?	?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	I	S	E	E	T	H	H	A	L	T	E	L	S	T	N	A	G	Y	P	I	T	E	T	L	S	G	S	G	D	L	G	Q	V	L	V	D	A	I	K	K	Y	D	M	D	L	V	V	C	G	H	H	Q	D	F	W	S	K	L	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Sequence		S	S	A	R	Q	L	I	N	T	V	H	V	D	M	L	I	V	P	L	R	D	E	E	E
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jmv chain A Region: 3 - 141 Aligned: 139 Modelled: 139 Confidence: 99.9% Identity: 68% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3hgm chain D Region: 3 - 137 Aligned: 135 Modelled: 135 Confidence: 99.9% Identity: 23% PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata Phyre2 PDB 1mjh chain A Region: 1 - 141 Aligned: 139 Modelled: 141 Confidence: 99.9% Identity: 16% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 2z3v chain A domain 1 Region: 3 - 137 Aligned: 132 Modelled: 135 Confidence: 99.9% Identity: 24% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3s3t chain D Region: 2 - 138 Aligned: 137 Modelled: 137 Confidence: 99.9% Identity: 18% PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum Phyre2 PDB 2dum chain D Region: 3 - 142 Aligned: 139 Modelled: 140 Confidence: 99.9% Identity: 15% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 Phyre2 PDB 3dlo chain C Region: 3 - 138 Aligned: 128 Modelled: 126 Confidence: 99.9% Identity: 18% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus Phyre2 PDB 1tq8 chain A Region: 1 - 140 Aligned: 122 Modelled: 122 Confidence: 99.9% Identity: 25% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3fg9 chain B Region: 1 - 138 Aligned: 130 Modelled: 138 Confidence: 99.9% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 Phyre2 PDB 2pfs chain A Region: 3 - 138 Aligned: 121 Modelled: 136 Confidence: 99.9% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea Phyre2 PDB 2gm3 chain A domain 1 Region: 4 - 143 Aligned: 135 Modelled: 136 Confidence: 99.8% Identity: 16% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3fh0 chain A Region: 2 - 138 Aligned: 121 Modelled: 122 Confidence: 99.8% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase Phyre2 PDB 3idf chain A Region: 4 - 138 Aligned: 135 Modelled: 135 Confidence: 99.8% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a Phyre2 PDB 3loq chain A Region: 2 - 143 Aligned: 123 Modelled: 123 Confidence: 99.8% Identity: 17% PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 Phyre2 PDB 3olq chain A Region: 2 - 144 Aligned: 143 Modelled: 143 Confidence: 99.8% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 Phyre2 PDB 3mt0 chain A Region: 2 - 144 Aligned: 125 Modelled: 125 Confidence: 99.7% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 Phyre2 PDB 1q77 chain A Region: 2 - 138 Aligned: 131 Modelled: 135 Confidence: 99.7% Identity: 16% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 2jax chain A Region: 3 - 138 Aligned: 132 Modelled: 136 Confidence: 99.6% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis Phyre2 PDB 3ab8 chain B Region: 2 - 138 Aligned: 116 Modelled: 117 Confidence: 99.6% Identity: 20% PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. Phyre2 PDB 3a2k chain B Region: 4 - 112 Aligned: 94 Modelled: 94 Confidence: 75.0% Identity: 23% PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna Phyre2 1 d1jmva_ 2 c3hgmD_ 3 d1mjha_ 4 d2z3va1 5 c3s3tD_ 6 c2dumD_ 7 c3dloC_ 8 d1tq8a_ 9 c3fg9B_ 10 c2pfsA_ 11 d2gm3a1 12 c3fh0A_ 13 c3idfA_ 14 c3loqA_ 15 c3olqA_ 16 c3mt0A_ 17 d1q77a_ 18 c2jaxA_ 19 c3ab8B_ 20 c3a2kB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jmva_ 99.9 68 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 2 c3hgmD_ 99.9 23 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 3 d1mjha_ 99.9 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 4 d2z3va1 99.9 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 5 c3s3tD_ 99.9 18 PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum 6 c2dumD_ 99.9 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 7 c3dloC_ 99.9 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus 8 d1tq8a_ 99.9 25 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 9 c3fg9B_ 99.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 10 c2pfsA_ 99.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 11 d2gm3a1 99.8 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 12 c3fh0A_ 99.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase 13 c3idfA_ 99.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a 14 c3loqA_ 99.8 17 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 15 c3olqA_ 99.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 16 c3mt0A_ 99.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 17 d1q77a_ 99.7 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 18 c2jaxA_ 99.6 14 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis 19 c3ab8B_ 99.6 20 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. 20 c3a2kB_ 75.0 23 PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna 21 c1ni5A_ not modelled 65.6 14 PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli 22 c3mcuF_ not modelled 65.6 16 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 23 d3clsc1 not modelled 51.5 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 24 c3lqkA_ not modelled 50.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 25 d1ni5a1 not modelled 49.9 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 26 d1zuna1 not modelled 49.2 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 27 d1g5qa_ not modelled 48.1 18 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 28 d1efpb_ not modelled 47.9 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 29 c2e21A_ not modelled 46.2 19 PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. 30 d1o94c_ not modelled 44.2 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 31 d1p3y1_ not modelled 42.3 14 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 32 c1zunA_ not modelled 41.8 18 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae 33 c2ejbA_ not modelled 40.6 9 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 34 c3zquA_ not modelled 39.5 9 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 35 c1o94D_ not modelled 39.0 27 PDB header:electron transport Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein 36 c3qjgD_ not modelled 39.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus 37 d1sbza_ not modelled 38.6 9 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 38 d1gph11 not modelled 37.8 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 39 d1efvb_ not modelled 35.6 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 40 d1mvla_ not modelled 34.8 16 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 41 c1mvlA_ not modelled 34.8 16 PDB header:lyase Chain: A: PDB Molecule:ppc decarboxylase athal3a; PDBTitle: ppc decarboxylase mutant c175s 42 c1vl2C_ not modelled 34.2 9 PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution 43 d2dbsa1 not modelled 32.2 17 Fold:TTHC002-like Superfamily:TTHC002-like Family:TTHC002-like 44 d1wy5a1 not modelled 31.6 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 45 d1p5dx1 not modelled 31.6 14 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 46 c2pjuD_ not modelled 29.9 9 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 47 d1vl2a1 not modelled 28.8 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 48 d1np7a2 not modelled 26.3 13 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 49 d2iela1 not modelled 26.0 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 50 d1vbka1 not modelled 25.5 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 51 c2xrzA_ not modelled 25.1 16 PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion 52 c2ywxA_ not modelled 24.9 7 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii 53 c3c04A_ not modelled 24.5 14 PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa 54 c1kh2D_ not modelled 24.1 16 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 55 d1t6t1_ not modelled 23.6 12 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 56 d1qzua_ not modelled 22.2 19 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 57 c3r8wC_ not modelled 20.4 20 PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution 58 d1j20a1 not modelled 18.8 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 59 d1ylqa1 not modelled 18.4 19 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 60 d1v53a1 not modelled 18.4 24 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 61 d2pjua1 not modelled 18.0 9 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 62 c2qf7A_ not modelled 17.4 16 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli 63 d1m7ja3 not modelled 17.1 17 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:D-aminoacylase, catalytic domain 64 c3tvsA_ not modelled 16.9 10 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome 65 c2nz2A_ not modelled 16.7 6 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline 66 c1gph1_ not modelled 16.2 17 PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis 67 d2e1za2 not modelled 16.1 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 68 c1k97A_ not modelled 15.4 18 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 69 d1cnza_ not modelled 15.3 28 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 70 d2c5sa1 not modelled 15.0 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 71 d1tifa_ not modelled 14.9 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 72 c3trhI_ not modelled 14.7 9 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 73 c3i3wB_ not modelled 14.4 16 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis 74 d2j07a2 not modelled 14.1 13 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 75 c1nuiA_ not modelled 14.0 18 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 76 d1xaca_ not modelled 14.0 24 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 77 d1g99a2 not modelled 13.9 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 78 c2oq2B_ not modelled 13.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex 79 d1pkla3 not modelled 13.8 22 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 80 c2f7lA_ not modelled 13.7 15 PDB header:isomerase Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase; PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase 81 d1nuia1 not modelled 13.6 18 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 82 d1cm7a_ not modelled 13.1 28 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 83 c3u1hA_ not modelled 13.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus 84 d1t0la_ not modelled 13.0 9 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 85 c3us8A_ not modelled 12.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of an isocitrate dehydrogenase from sinorhizobium2 meliloti 1021 86 d1uf3a_ not modelled 12.4 19 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 87 d1nmpa_ not modelled 12.3 21 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 88 d1g2ua_ not modelled 12.1 24 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 89 d1lwda_ not modelled 11.8 3 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 90 d3pmga1 not modelled 11.7 14 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 91 c2iirJ_ not modelled 11.6 36 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 92 c3pdkB_ not modelled 11.4 18 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis 93 d3clsd1 not modelled 11.3 26 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 94 d1k92a1 not modelled 11.2 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 95 c2au3A_ not modelled 10.6 14 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 96 c1ecjB_ not modelled 10.6 22 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 97 c1dd9A_ not modelled 10.5 11 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 98 d1dd9a_ not modelled 10.5 11 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 99 c3p4iA_ not modelled 10.5 29 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0