Phyre 2 Results for P0AED0

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Email | l.a.kelley@imperial.ac.uk
Description | P0AED0
Date | Thu Jan 5 11:23:03 GMT 2012
Unique Job ID | 851bebc7914aaa1f

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1jmva_
Top template information
Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
Confidence and coverage
Confidence: | 99.9% | Coverage: | 97%
139 residues ( 97% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | Y | K | H | I | L | I | A | V | D | L | S | P | E | S | K | V | L | V | E | K | A | V | S | M | A | R | P | Y | N | A | K | V | S | L | I | H | V | D | V | N | Y | S | D | L | Y | T | G | L | I | D | V | N | L | G | D | M | Q | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  | ? |  |  | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | R | I | S | E | E | T | H | H | A | L | T | E | L | S | T | N | A | G | Y | P | I | T | E | T | L | S | G | S | G | D | L | G | Q | V | L | V | D | A | I | K | K | Y | D | M | D | L | V | V | C | G | H | H | Q | D | F | W | S | K | L | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | .
Sequence |  | S | S | A | R | Q | L | I | N | T | V | H | V | D | M | L | I | V | P | L | R | D | E | E | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1jmva_ |

### PDB 1jmv chain A

Region: 3 - 141
Aligned: 139
Modelled: 139
Confidence: 99.9%
Identity: 68%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: Universal stress protein-like

Phyre2
2 |
| c3hgmD_ |

### PDB 3hgm chain D

Region: 3 - 137
Aligned: 135
Modelled: 135
Confidence: 99.9%
Identity: 23%
PDB header:signaling protein
Chain: D: PDB Molecule:universal stress protein tead;
PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata

Phyre2
3 |
| d1mjha_ |

### PDB 1mjh chain A

Region: 1 - 141
Aligned: 139
Modelled: 141
Confidence: 99.9%
Identity: 16%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: Universal stress protein-like

Phyre2
4 |
| d2z3va1 |

### PDB 2z3v chain A domain 1

Region: 3 - 137
Aligned: 132
Modelled: 135
Confidence: 99.9%
Identity: 24%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: Universal stress protein-like

Phyre2
5 |
| c3s3tD_ |

### PDB 3s3t chain D

Region: 2 - 138
Aligned: 137
Modelled: 137
Confidence: 99.9%
Identity: 18%
PDB header:chaperone
Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa
PDBTitle: universal stress protein uspa from lactobacillus plantarum

Phyre2
6 |
| c2dumD_ |

### PDB 2dum chain D

Region: 3 - 142
Aligned: 139
Modelled: 140
Confidence: 99.9%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein ph0823;
PDBTitle: crystal structure of hypothetical protein, ph0823

Phyre2
7 |
| c3dloC_ |

### PDB 3dlo chain C

Region: 3 - 138
Aligned: 128
Modelled: 126
Confidence: 99.9%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:universal stress protein;
PDBTitle: structure of universal stress protein from archaeoglobus fulgidus

Phyre2
8 |
| d1tq8a_ |

### PDB 1tq8 chain A

Region: 1 - 140
Aligned: 122
Modelled: 122
Confidence: 99.9%
Identity: 25%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: Universal stress protein-like

Phyre2
9 |
| c3fg9B_ |

### PDB 3fg9 chain B

Region: 1 - 138
Aligned: 130
Modelled: 138
Confidence: 99.9%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein of universal stress protein uspa family;
PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1

Phyre2
10 |
| c2pfsA_ |

### PDB 2pfs chain A

Region: 3 - 138
Aligned: 121
Modelled: 136
Confidence: 99.9%
Identity: 27%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:universal stress protein;
PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea

Phyre2
11 |
| d2gm3a1 |

### PDB 2gm3 chain A domain 1

Region: 4 - 143
Aligned: 135
Modelled: 136
Confidence: 99.8%
Identity: 16%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: Universal stress protein-like

Phyre2
12 |
| c3fh0A_ |

### PDB 3fh0 chain A

Region: 2 - 138
Aligned: 121
Modelled: 122
Confidence: 99.8%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative universal stress protein kpn_01444;
PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase

Phyre2
13 |
| c3idfA_ |

### PDB 3idf chain A

Region: 4 - 138
Aligned: 135
Modelled: 135
Confidence: 99.8%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:usp-like protein;
PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a

Phyre2
14 |
| c3loqA_ |

### PDB 3loq chain A

Region: 2 - 143
Aligned: 123
Modelled: 123
Confidence: 99.8%
Identity: 17%
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:universal stress protein;
PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304

Phyre2
15 |
| c3olqA_ |

### PDB 3olq chain A

Region: 2 - 144
Aligned: 143
Modelled: 143
Confidence: 99.8%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:universal stress protein e;
PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320

Phyre2
16 |
| c3mt0A_ |

### PDB 3mt0 chain A

Region: 2 - 144
Aligned: 125
Modelled: 125
Confidence: 99.7%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pa1789;
PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1

Phyre2
17 |
| d1q77a_ |

### PDB 1q77 chain A

Region: 2 - 138
Aligned: 131
Modelled: 135
Confidence: 99.7%
Identity: 16%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: Universal stress protein-like

Phyre2
18 |
| c2jaxA_ |

### PDB 2jax chain A

Region: 3 - 138
Aligned: 132
Modelled: 136
Confidence: 99.6%
Identity: 14%
PDB header:protein binding
Chain: A: PDB Molecule:hypothetical protein tb31.7;
PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis

Phyre2
19 |
| c3ab8B_ |

### PDB 3ab8 chain B

Region: 2 - 138
Aligned: 116
Modelled: 117
Confidence: 99.6%
Identity: 20%
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein ttha0350;
PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps.

Phyre2
20 |
| c3a2kB_ |

### PDB 3a2k chain B

Region: 4 - 112
Aligned: 94
Modelled: 94
Confidence: 75.0%
Identity: 23%
PDB header:ligase/rna
Chain: B: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils complexed with trna

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1jmva_ |
|  | 99.9 | 68 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
2 | c3hgmD_ |
|  | 99.9 | 23 | PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata
3 | d1mjha_ |
|  | 99.9 | 16 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
4 | d2z3va1 |
|  | 99.9 | 24 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
5 | c3s3tD_ |
|  | 99.9 | 18 | PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum
6 | c2dumD_ |
|  | 99.9 | 15 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823
7 | c3dloC_ |
|  | 99.9 | 18 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus
8 | d1tq8a_ |
|  | 99.9 | 25 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
9 | c3fg9B_ |
|  | 99.9 | 18 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1
10 | c2pfsA_ |
|  | 99.9 | 27 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea
11 | d2gm3a1 |
|  | 99.8 | 16 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
12 | c3fh0A_ |
|  | 99.8 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase
13 | c3idfA_ |
|  | 99.8 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a
14 | c3loqA_ |
|  | 99.8 | 17 | PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304
15 | c3olqA_ |
|  | 99.8 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320
16 | c3mt0A_ |
|  | 99.7 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1
17 | d1q77a_ |
|  | 99.7 | 16 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
18 | c2jaxA_ |
|  | 99.6 | 14 | PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis
19 | c3ab8B_ |
|  | 99.6 | 20 | PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps.
20 | c3a2kB_ |
|  | 75.0 | 23 | PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna
21 | c1ni5A_ |
| not modelled | 65.6 | 14 | PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli
22 | c3mcuF_ |
| not modelled | 65.6 | 16 | PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215.
23 | d3clsc1 |
| not modelled | 51.5 | 16 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits
24 | c3lqkA_ |
| not modelled | 50.6 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c
25 | d1ni5a1 |
| not modelled | 49.9 | 14 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase
26 | d1zuna1 |
| not modelled | 49.2 | 18 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like
27 | d1g5qa_ |
| not modelled | 48.1 | 18 | Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
28 | d1efpb_ |
| not modelled | 47.9 | 12 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits
29 | c2e21A_ |
| not modelled | 46.2 | 19 | PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus.
30 | d1o94c_ |
| not modelled | 44.2 | 16 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits
31 | d1p3y1_ |
| not modelled | 42.3 | 14 | Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
32 | c1zunA_ |
| not modelled | 41.8 | 18 | PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
33 | c2ejbA_ |
| not modelled | 40.6 | 9 | PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
34 | c3zquA_ |
| not modelled | 39.5 | 9 | PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase
35 | c1o94D_ |
| not modelled | 39.0 | 27 | PDB header:electron transport Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein
36 | c3qjgD_ |
| not modelled | 39.0 | 18 | PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus
37 | d1sbza_ |
| not modelled | 38.6 | 9 | Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
38 | d1gph11 |
| not modelled | 37.8 | 17 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
39 | d1efvb_ |
| not modelled | 35.6 | 15 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits
40 | d1mvla_ |
| not modelled | 34.8 | 16 | Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
41 | c1mvlA_ |
| not modelled | 34.8 | 16 | PDB header:lyase Chain: A: PDB Molecule:ppc decarboxylase athal3a; PDBTitle: ppc decarboxylase mutant c175s
42 | c1vl2C_ |
| not modelled | 34.2 | 9 | PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution
43 | d2dbsa1 |
| not modelled | 32.2 | 17 | Fold:TTHC002-like Superfamily:TTHC002-like Family:TTHC002-like
44 | d1wy5a1 |
| not modelled | 31.6 | 15 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase
45 | d1p5dx1 |
| not modelled | 31.6 | 14 | Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains
46 | c2pjuD_ |
| not modelled | 29.9 | 9 | PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr
47 | d1vl2a1 |
| not modelled | 28.8 | 9 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases
48 | d1np7a2 |
| not modelled | 26.3 | 13 | Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain
49 | d2iela1 |
| not modelled | 26.0 | 15 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like
50 | d1vbka1 |
| not modelled | 25.5 | 9 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like
51 | c2xrzA_ |
| not modelled | 25.1 | 16 | PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion
52 | c2ywxA_ |
| not modelled | 24.9 | 7 | PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii
53 | c3c04A_ |
| not modelled | 24.5 | 14 | PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa
54 | c1kh2D_ |
| not modelled | 24.1 | 16 | PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp
55 | d1t6t1_ |
| not modelled | 23.6 | 12 | Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain
56 | d1qzua_ |
| not modelled | 22.2 | 19 | Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
57 | c3r8wC_ |
| not modelled | 20.4 | 20 | PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution
58 | d1j20a1 |
| not modelled | 18.8 | 16 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases
59 | d1ylqa1 |
| not modelled | 18.4 | 19 | Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase
60 | d1v53a1 |
| not modelled | 18.4 | 24 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
61 | d2pjua1 |
| not modelled | 18.0 | 9 | Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like
62 | c2qf7A_ |
| not modelled | 17.4 | 16 | PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli
63 | d1m7ja3 |
| not modelled | 17.1 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:D-aminoacylase, catalytic domain
64 | c3tvsA_ |
| not modelled | 16.9 | 10 | PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome
65 | c2nz2A_ |
| not modelled | 16.7 | 6 | PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline
66 | c1gph1_ |
| not modelled | 16.2 | 17 | PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis
67 | d2e1za2 |
| not modelled | 16.1 | 21 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like
68 | c1k97A_ |
| not modelled | 15.4 | 18 | PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline
69 | d1cnza_ |
| not modelled | 15.3 | 28 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
70 | d2c5sa1 |
| not modelled | 15.0 | 13 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like
71 | d1tifa_ |
| not modelled | 14.9 | 16 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain
72 | c3trhI_ |
| not modelled | 14.7 | 9 | PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
73 | c3i3wB_ |
| not modelled | 14.4 | 16 | PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis
74 | d2j07a2 |
| not modelled | 14.1 | 13 | Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain
75 | c1nuiA_ |
| not modelled | 14.0 | 18 | PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein
76 | d1xaca_ |
| not modelled | 14.0 | 24 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
77 | d1g99a2 |
| not modelled | 13.9 | 21 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like
78 | c2oq2B_ |
| not modelled | 13.8 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
79 | d1pkla3 |
| not modelled | 13.8 | 22 | Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain
80 | c2f7lA_ |
| not modelled | 13.7 | 15 | PDB header:isomerase Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase; PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase
81 | d1nuia1 |
| not modelled | 13.6 | 18 | Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein
82 | d1cm7a_ |
| not modelled | 13.1 | 28 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
83 | c3u1hA_ |
| not modelled | 13.1 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus
84 | d1t0la_ |
| not modelled | 13.0 | 9 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
85 | c3us8A_ |
| not modelled | 12.8 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of an isocitrate dehydrogenase from sinorhizobium2 meliloti 1021
86 | d1uf3a_ |
| not modelled | 12.4 | 19 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like
87 | d1nmpa_ |
| not modelled | 12.3 | 21 | Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like
88 | d1g2ua_ |
| not modelled | 12.1 | 24 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
89 | d1lwda_ |
| not modelled | 11.8 | 3 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases
90 | d3pmga1 |
| not modelled | 11.7 | 14 | Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains
91 | c2iirJ_ |
| not modelled | 11.6 | 36 | PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima
92 | c3pdkB_ |
| not modelled | 11.4 | 18 | PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis
93 | d3clsd1 |
| not modelled | 11.3 | 26 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits
94 | d1k92a1 |
| not modelled | 11.2 | 13 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases
95 | c2au3A_ |
| not modelled | 10.6 | 14 | PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains)
96 | c1ecjB_ |
| not modelled | 10.6 | 22 | PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer
97 | c1dd9A_ |
| not modelled | 10.5 | 11 | PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core
98 | d1dd9a_ |
| not modelled | 10.5 | 11 | Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core
99 | c3p4iA_ |
| not modelled | 10.5 | 29 | PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0