Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

N

T

N

V

F

R

L

L

L

L

G

S

L

F

S

L

S

A

C

V

Q

Q

S

E

V

R

Q

M

K

H

S

V

S

T

L

N

Q

E

M

T

Q

L

N

Q

E

T

V

K

I

T

Q

Q

N

R

L

N

A

K

S

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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.

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120

Sequence

S

S

G

V

Y

L

L

P

G

A

K

T

P

A

R

L

E

S

Q

I

G

T

L

R

M

S

L

V

N

I

T

P

D

A

D

G

T

T

L

T

L

R

I

Q

G

E

S

N

D

P

L

P

A

F

S

G

T

V

E

Y

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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.

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130

.

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140

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150

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160

.

.

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170

.

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.

.

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Sequence

G

Q

I

Q

G

T

I

D

N

F

Q

E

I

N

V

Q

N

Q

L

I

N

A

P

A

S

V

L

A

P

S

D

V

D

I

P

L

Q

L

K

G

I

S

V

D

Q

L

G

F

V

R

I

H

D

I

Q

P

V

M

Q

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jwy chain A Region: 21 - 179 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 100% PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540 Phyre2 PDB 1kdd chain C Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 83.8% Identity: 29% PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l Phyre2 PDB 1kdd chain F Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 83.6% Identity: 29% PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l Phyre2 PDB 1kdd chain A Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 83.6% Identity: 29% PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l Phyre2 PDB 1kd9 chain A Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 83.3% Identity: 29% PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l Phyre2 PDB 1kd9 chain C Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 83.3% Identity: 29% PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l Phyre2 PDB 1kd9 chain F Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 83.3% Identity: 29% PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l Phyre2 PDB 1kd8 chain F Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 69.2% Identity: 26% PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l Phyre2 PDB 1kd8 chain C Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 69.2% Identity: 26% PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l Phyre2 PDB 1kd8 chain A Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 67.8% Identity: 26% PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l Phyre2 PDB 2x7a chain B Region: 22 - 56 Aligned: 35 Modelled: 35 Confidence: 66.1% Identity: 20% PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain Phyre2 PDB 3mkx chain C Region: 22 - 56 Aligned: 35 Modelled: 35 Confidence: 56.6% Identity: 20% PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin Phyre2 PDB 2zzj chain A Region: 114 - 171 Aligned: 52 Modelled: 58 Confidence: 52.2% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:glucuronan lyase a; PDBTitle: crystal structure of endo-beta-1,4-glucuronan lyase from2 fungus trichoderma reesei Phyre2 PDB 1dip chain A Region: 24 - 52 Aligned: 29 Modelled: 29 Confidence: 42.9% Identity: 24% PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures Phyre2 PDB 1yyc chain A Region: 84 - 159 Aligned: 66 Modelled: 76 Confidence: 40.4% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 Phyre2 PDB 2gr7 chain C Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 38.0% Identity: 19% PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 Phyre2 PDB 2gr7 chain A domain 1 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 38.0% Identity: 19% Fold: Pili subunits Superfamily: Pili subunits Family: YadA C-terminal domain-like Phyre2 PDB 1u2u chain A Region: 25 - 51 Aligned: 27 Modelled: 27 Confidence: 37.8% Identity: 37% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper Phyre2 PDB 1kd8 chain E Region: 26 - 55 Aligned: 30 Modelled: 30 Confidence: 37.1% Identity: 23% PDB header:de novo protein Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l Phyre2 PDB 3bvh chain C Region: 24 - 53 Aligned: 30 Modelled: 30 Confidence: 34.5% Identity: 20% PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide Phyre2 1 c2jwyA_ 2 c1kddC_ 3 c1kddF_ 4 c1kddA_ 5 c1kd9A_ 6 c1kd9C_ 7 c1kd9F_ 8 c1kd8F_ 9 c1kd8C_ 10 c1kd8A_ 11 c2x7aB_ 12 c3mkxC_ 13 c2zzjA_ 14 c1dipA_ 15 c1yycA_ 16 c2gr7C_ 17 d2gr7a1 18 c1u2uA_ 19 c1kd8E_ 20 c3bvhC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jwyA_ 100.0 100 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540 2 c1kddC_ 83.8 29 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 3 c1kddF_ 83.6 29 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 4 c1kddA_ 83.6 29 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 5 c1kd9A_ 83.3 29 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 6 c1kd9C_ 83.3 29 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 7 c1kd9F_ 83.3 29 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 8 c1kd8F_ 69.2 26 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 9 c1kd8C_ 69.2 26 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 10 c1kd8A_ 67.8 26 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 11 c2x7aB_ 66.1 20 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 12 c3mkxC_ 56.6 20 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 13 c2zzjA_ 52.2 19 PDB header:lyase Chain: A: PDB Molecule:glucuronan lyase a; PDBTitle: crystal structure of endo-beta-1,4-glucuronan lyase from2 fungus trichoderma reesei 14 c1dipA_ 42.9 24 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 15 c1yycA_ 40.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 16 c2gr7C_ 38.0 19 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 17 d2gr7a1 38.0 19 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 18 c1u2uA_ 37.8 37 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 19 c1kd8E_ 37.1 23 PDB header:de novo protein Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 20 c3bvhC_ 34.5 20 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 21 c3bkpA_ not modelled 33.3 21 PDB header:isomerase Chain: A: PDB Molecule:cyclophilin; PDBTitle: crystal structure of the toxoplasma gondii cyclophilin, 49.m03261 22 c2yy0D_ not modelled 32.7 21 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 23 d1xo8a_ not modelled 29.4 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 24 c2hpcF_ not modelled 26.0 19 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 25 d1r8ia_ not modelled 25.6 11 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Typo IV secretion system protein TraC Family:Typo IV secretion system protein TraC 26 c1r8iA_ not modelled 25.6 11 PDB header:structural protein Chain: A: PDB Molecule:trac; PDBTitle: crystal structure of trac 27 c2vefB_ not modelled 24.9 33 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 28 c1aq5C_ not modelled 24.6 11 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 29 d1o75a2 not modelled 24.5 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Tp47 lipoprotein, middle and C-terminal domains Family:Tp47 lipoprotein, middle and C-terminal domains 30 c3t97A_ not modelled 22.9 3 PDB header:protein transport Chain: A: PDB Molecule:nuclear pore glycoprotein p62; PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup62/nup54 31 d1afwa2 not modelled 22.6 21 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 32 c2xzrA_ not modelled 22.5 15 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 33 c3iynR_ not modelled 20.1 10 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 34 d1smoa_ not modelled 20.1 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 35 d1an2a_ not modelled 19.7 9 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 36 c1xnaA_ not modelled 19.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:protein (dna-repair protein xrcc1); PDBTitle: nmr solution structure of the single-strand break repair2 protein xrcc1-n-terminal domain 37 d1eqwa_ not modelled 19.2 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 38 c2dzaA_ not modelled 19.1 25 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate 39 d1eyea_ not modelled 19.0 33 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 40 c1cz7C_ not modelled 18.4 19 PDB header:contractile protein Chain: C: PDB Molecule:microtubule motor protein ncd; PDBTitle: the crystal structure of a minus-end directed microtubule2 motor protein ncd reveals variable dimer conformations 41 c3aqqD_ not modelled 18.0 18 PDB header:dna binding protein Chain: D: PDB Molecule:calcium-regulated heat stable protein 1; PDBTitle: crystal structure of human crhsp-24 42 c1kzzA_ not modelled 17.7 7 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 43 c2y5sA_ not modelled 17.5 33 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 44 c2e43A_ not modelled 17.1 15 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 45 d1wu9a1 not modelled 16.9 14 Fold:EB1 dimerisation domain-like Superfamily:EB1 dimerisation domain-like Family:EB1 dimerisation domain-like 46 c2ibyD_ not modelled 16.9 5 PDB header:transferase Chain: D: PDB Molecule:acetyl-coa acetyltransferase; PDBTitle: crystallographic and kinetic studies of human mitochondrial2 acetoacetyl-coa thiolase (t2): the importance of potassium and3 chloride for its structure and function 47 c2bmbA_ not modelled 16.8 33 PDB header:transferase Chain: A: PDB Molecule:folic acid synthesis protein fol1; PDBTitle: x-ray structure of the bifunctional 6-hydroxymethyl-7,8-2 dihydroxypterin pyrophosphokinase dihydropteroate synthase3 from saccharomyces cerevisiae 48 c1coiA_ not modelled 16.2 19 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 49 c2xv5A_ not modelled 16.1 7 PDB header:structural protein Chain: A: PDB Molecule:lamin-a/c; PDBTitle: human lamin a coil 2b fragment 50 c1n73C_ not modelled 15.9 13 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 51 c1deqF_ not modelled 15.5 16 PDB header: PDB COMPND: 52 d1e5ma2 not modelled 15.5 14 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 53 c2vp8A_ not modelled 15.4 22 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 54 c3n4xB_ not modelled 15.3 14 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 55 c1deqO_ not modelled 14.9 13 PDB header: PDB COMPND: 56 d1esoa_ not modelled 14.7 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cu,Zn superoxide dismutase-like Family:Cu,Zn superoxide dismutase-like 57 c1u0iA_ not modelled 14.5 20 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 58 d1v5ja_ not modelled 14.4 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 59 d1ajza_ not modelled 14.4 25 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 60 d1ad1a_ not modelled 14.4 25 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 61 c3pp5A_ not modelled 14.1 21 PDB header:structural protein Chain: A: PDB Molecule:brk1; PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1 62 d1m3ka2 not modelled 13.9 20 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 63 c3mcnA_ not modelled 13.7 43 PDB header:transferase Chain: A: PDB Molecule:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine PDBTitle: crystal structure of the 6-hyroxymethyl-7,8-dihydropterin2 pyrophosphokinase dihydropteroate synthase bifunctional enzyme from3 francisella tularensis 64 c3ghgK_ not modelled 13.6 3 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 65 d2ix4a2 not modelled 13.6 29 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 66 c1txqB_ not modelled 13.5 14 PDB header:structural protein/protein binding Chain: B: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: crystal structure of the eb1 c-terminal domain complexed2 with the cap-gly domain of p150glued 67 d1txqb1 not modelled 13.5 14 Fold:EB1 dimerisation domain-like Superfamily:EB1 dimerisation domain-like Family:EB1 dimerisation domain-like 68 c3lssA_ not modelled 13.4 18 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp 69 d2gfva2 not modelled 13.3 43 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 70 c1r48A_ not modelled 13.2 16 PDB header:transport protein Chain: A: PDB Molecule:proline/betaine transporter; PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop 71 d1ulqa2 not modelled 13.0 27 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 72 d1k32a4 not modelled 12.9 31 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Tail specific protease, catalytic domain 73 c3p8cE_ not modelled 12.9 25 PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex 74 c3cm9J_ not modelled 12.9 25 PDB header:immune system Chain: J: PDB Molecule:secretory component; PDBTitle: solution structure of human siga2 75 c3chnJ_ not modelled 12.9 25 PDB header:immune system Chain: J: PDB Molecule:secretory component; PDBTitle: solution structure of human secretory iga1 76 c3rbgB_ not modelled 12.7 17 PDB header:immune system Chain: B: PDB Molecule:cytotoxic and regulatory t-cell molecule; PDBTitle: crystal structure analysis of class-i mhc restricted t-cell associated2 molecule 77 c1tx2A_ not modelled 12.7 42 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 78 d1tx2a_ not modelled 12.7 42 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 79 d1wdkc2 not modelled 12.6 13 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 80 d2ijra1 not modelled 12.4 11 Fold:Api92-like Superfamily:Api92-like Family:Api92-like 81 d1ox0a2 not modelled 12.3 36 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 82 c3ni0A_ not modelled 12.2 32 PDB header:immune system Chain: A: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain 83 c3tr9A_ not modelled 12.2 25 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 84 d1hkfa_ not modelled 12.1 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 85 c2xdjF_ not modelled 12.1 6 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 86 c1ci6A_ not modelled 12.0 9 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 87 c1ca9D_ not modelled 11.9 23 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 88 c1ei3E_ not modelled 11.8 3 PDB header: PDB COMPND: 89 c1fmhA_ not modelled 11.7 31 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 90 c1t2kD_ not modelled 11.7 16 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 91 d1nldl1 not modelled 11.5 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 92 c3m9bK_ not modelled 11.5 15 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 93 c1fosF_ not modelled 11.3 16 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 94 d1ub5a1 not modelled 11.1 4 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 95 c1jccC_ not modelled 10.8 3 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 96 d1dpta_ not modelled 10.6 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 97 c1fosE_ not modelled 10.6 12 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 98 d1h3pl1 not modelled 10.6 2 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 99 c2q7cC_ not modelled 10.3 11 PDB header:viral protein Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and PDBTitle: crystal structure of iqn17

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0