Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33349
DateThu Jan 5 11:51:51 GMT 2012
Unique Job ID8012b355dc6db436

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2g5gx1
Top template information
Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:ChaN-like
Confidence and coverage
Confidence: 97.6% Coverage: 22%
165 residues ( 22% of your sequence) have been modelled with 97.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRVDELFLAHQLPVAIYSY
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Disorder  ????























































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   .........70.........80.........90.........100.........110.........120
Sequence  CQYQDGAAPGRGAWTPFAEFSPEWQALQAARRIQAQTYFIDLPCWAQSEEEDDSPDTQDE
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Disorder 
?????

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?

??????????

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   .........130.........140.........150.........160.........170.........180
Sequence  SQALLLRATRMDNSDTLWDHLFEDESQQTALPSALAHYFAQLRGDASGDALNRQREAFMA
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   .........190.........200.........210.........220.........230.........240
Sequence  RWIGWAMQQNNGDVLVVCGGWHAPALAKMWRECPQKINKPELPSLADAVTGCYLTPYSEK
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?????????????????????????








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   .........250.........260.........270.........280.........290.........300
Sequence  RLDVLAGYLSGMPAPVWQNWCWQWGLQKAGEQLLKTILTRLRQHKLPASTADMAAAHLHA
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?


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   .........310.........320.........330.........340.........350.........360
Sequence  MALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPLPWSYRGVIHPDTDPILLTLIDTLAGD
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???

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   .........370.........380.........390.........400.........410.........420
Sequence  GFGKLAPSTPQPPLPKDVTCELERTAISLPAELTLNRFTPDGLAQSQVLHRLAILEIPGI
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   .........430.........440.........450.........460.........470.........480
Sequence  VRQQGSTLTLAGNGEERWKLTRPLSQHAALIEAACFGATLQEAARNKLEADMLDAGGIGS
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????????







































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   .........490.........500.........510.........520.........530.........540
Sequence  ITTCLSQAALAGLASFSQQLLEQLTLLIAQENQFAEMGQALEVLYALWRLDEISGMQGAQ
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??
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   .........550.........560.........570.........580.........590.........600
Sequence  ILQTTLCATIDRTLWLCESNGRPDEKEFHAHLHSWQALCHILRDLHSGVNLPGVSLSAAV
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?
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   .........610.........620.........630.........640.........650.........660
Sequence  ALLERRSQAIHAPALDRGAALGALMRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALA
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   .........670.........680.........690.........700.........710.........720
Sequence  RHQLACQPAFIAGFSSHLNQLSEADFINALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQ
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   .........730.........740.........750.........
Sequence  LPVSALQMPLHCPPQAIAHHQQLEQQALASLQNWGVFHV
Secondary structure 












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Disorder  ???


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??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2g5g chain X domain 1

3D model

Region: 2 - 203
Aligned: 165
Modelled: 178
Confidence: 97.6%
Identity: 12%
Fold: EreA/ChaN-like
Superfamily: EreA/ChaN-like
Family: ChaN-like

Phyre2

PDB 3ol4 chain B

3D model

Region: 245 - 304
Aligned: 59
Modelled: 60
Confidence: 77.8%
Identity: 10%
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c

Phyre2

PDB 2qgm chain A

3D model

Region: 8 - 203
Aligned: 184
Modelled: 184
Confidence: 71.4%
Identity: 17%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:succinoglycan biosynthesis protein;
PDBTitle: crystal structure of succinoglycan biosynthesis protein at2 the resolution 1.7 a. northeast structural genomics3 consortium target bcr136.

Phyre2

PDB 2qgm chain A domain 1

3D model

Region: 8 - 203
Aligned: 184
Modelled: 196
Confidence: 71.4%
Identity: 17%
Fold: EreA/ChaN-like
Superfamily: EreA/ChaN-like
Family: EreA-like

Phyre2

PDB 2ebf chain X domain 2

3D model

Region: 2 - 101
Aligned: 90
Modelled: 100
Confidence: 56.7%
Identity: 11%
Fold: EreA/ChaN-like
Superfamily: EreA/ChaN-like
Family: PMT domain-like

Phyre2

PDB 3f9v chain A

3D model

Region: 266 - 322
Aligned: 57
Modelled: 57
Confidence: 54.5%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: crystal structure of a near full-length archaeal mcm: functional2 insights for an aaa+ hexameric helicase

Phyre2

PDB 1txk chain A

3D model

Region: 428 - 445
Aligned: 18
Modelled: 18
Confidence: 53.8%
Identity: 17%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg

Phyre2

PDB 2ei9 chain A

3D model

Region: 11 - 34
Aligned: 24
Modelled: 24
Confidence: 51.2%
Identity: 17%
PDB header:gene regulation
Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein;
PDBTitle: crystal structure of r1bm endonuclease domain

Phyre2

PDB 3qfn chain A

3D model

Region: 1 - 37
Aligned: 37
Modelled: 37
Confidence: 50.9%
Identity: 11%
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate

Phyre2

PDB 1hjr chain A

3D model

Region: 17 - 37
Aligned: 21
Modelled: 21
Confidence: 48.6%
Identity: 29%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: RuvC resolvase

Phyre2

PDB 2rad chain B

3D model

Region: 175 - 203
Aligned: 28
Modelled: 29
Confidence: 47.5%
Identity: 14%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:succinoglycan biosynthesis protein;
PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135

Phyre2

PDB 1txk chain A domain 1

3D model

Region: 428 - 445
Aligned: 18
Modelled: 18
Confidence: 46.4%
Identity: 17%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: E-set domains of sugar-utilizing enzymes

Phyre2

PDB 1ffv chain A domain 1

3D model

Region: 299 - 356
Aligned: 43
Modelled: 43
Confidence: 43.8%
Identity: 14%
Fold: CO dehydrogenase ISP C-domain like
Superfamily: CO dehydrogenase ISP C-domain like
Family: CO dehydrogenase ISP C-domain like

Phyre2

PDB 1wdu chain A

3D model

Region: 11 - 34
Aligned: 24
Modelled: 24
Confidence: 38.1%
Identity: 8%
Fold: DNase I-like
Superfamily: DNase I-like
Family: DNase I-like

Phyre2

PDB 1v97 chain A domain 1

3D model

Region: 299 - 356
Aligned: 43
Modelled: 43
Confidence: 35.7%
Identity: 23%
Fold: CO dehydrogenase ISP C-domain like
Superfamily: CO dehydrogenase ISP C-domain like
Family: CO dehydrogenase ISP C-domain like

Phyre2

PDB 1n62 chain A domain 1

3D model

Region: 299 - 356
Aligned: 43
Modelled: 43
Confidence: 34.7%
Identity: 14%
Fold: CO dehydrogenase ISP C-domain like
Superfamily: CO dehydrogenase ISP C-domain like
Family: CO dehydrogenase ISP C-domain like

Phyre2

PDB 1kcf chain A domain 2

3D model

Region: 13 - 35
Aligned: 23
Modelled: 23
Confidence: 33.9%
Identity: 26%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Mitochondrial resolvase ydc2 catalytic domain

Phyre2

PDB 1t3q chain A domain 1

3D model

Region: 299 - 356
Aligned: 43
Modelled: 43
Confidence: 32.8%
Identity: 21%
Fold: CO dehydrogenase ISP C-domain like
Superfamily: CO dehydrogenase ISP C-domain like
Family: CO dehydrogenase ISP C-domain like

Phyre2

PDB 3f8t chain A

3D model

Region: 266 - 322
Aligned: 57
Modelled: 57
Confidence: 29.5%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:predicted atpase involved in replication control,
PDBTitle: crystal structure analysis of a full-length mcm homolog2 from methanopyrus kandleri

Phyre2

PDB 3czc chain A

3D model

Region: 193 - 201
Aligned: 9
Modelled: 9
Confidence: 29.3%
Identity: 44%
PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans

Phyre2
1

d2g5gx1
2

c3ol4B_
3

c2qgmA_
4

d2qgma1
5

d2ebfx2
6

c3f9vA_
7

c1txkA_
8

c2ei9A_
9

c3qfnA_
10

d1hjra_
11

c2radB_
12

d1txka1
13

d1ffva1
14

d1wdua_
15

d1v97a1
16

d1n62a1
17

d1kcfa2
18

d1t3qa1
19

c3f8tA_
20

c3czcA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2g5gx1



97.6 12 Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:ChaN-like
2c3ol4B_



77.8 10 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
3c2qgmA_



71.4 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:succinoglycan biosynthesis protein;
PDBTitle: crystal structure of succinoglycan biosynthesis protein at2 the resolution 1.7 a. northeast structural genomics3 consortium target bcr136.
4d2qgma1



71.4 17 Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:EreA-like
5d2ebfx2



56.7 11 Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:PMT domain-like
6c3f9vA_



54.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: crystal structure of a near full-length archaeal mcm: functional2 insights for an aaa+ hexameric helicase
7c1txkA_



53.8 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
8c2ei9A_



51.2 17 PDB header:gene regulation
Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein;
PDBTitle: crystal structure of r1bm endonuclease domain
9c3qfnA_



50.9 11 PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate
10d1hjra_



48.6 29 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:RuvC resolvase
11c2radB_



47.5 14 PDB header:biosynthetic protein
Chain: B: PDB Molecule:succinoglycan biosynthesis protein;
PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135
12d1txka1



46.4 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
13d1ffva1



43.8 14 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
14d1wdua_



38.1 8 Fold:DNase I-like
Superfamily:DNase I-like
Family:DNase I-like
15d1v97a1



35.7 23 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
16d1n62a1



34.7 14 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
17d1kcfa2



33.9 26 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
18d1t3qa1



32.8 21 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
19c3f8tA_



29.5 19 PDB header:hydrolase
Chain: A: PDB Molecule:predicted atpase involved in replication control,
PDBTitle: crystal structure analysis of a full-length mcm homolog2 from methanopyrus kandleri
20c3czcA_



29.3 44 PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
21d1vkra_



not modelled 28.7 20 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
22c1vkrA_



not modelled 28.7 20 PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
23c3b4sA_



not modelled 28.5 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein luxt;
PDBTitle: crystal structure of a luxt domain from vibrio2 parahaemolyticus rimd 2210633
24d1zxia1



not modelled 28.0 14 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
25c1t3qD_



not modelled 27.9 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
26d1rm6c1



not modelled 26.6 23 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
27c1n60D_



not modelled 26.2 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain;
PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
28d1g8pa_



not modelled 25.6 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
29d5easa1



not modelled 23.7 42 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpenoid cyclase N-terminal domain
30c2kuyA_



not modelled 23.4 42 PDB header:antimicrobial protein
Chain: A: PDB Molecule:prebacteriocin glycocin f;
PDBTitle: structure of glycocin f
31d3b55a1



not modelled 23.2 10 Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:EreA-like
32c3eubJ_



not modelled 22.4 23 PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
33c1tvmA_



not modelled 22.0 36 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
34d1n1ba1



not modelled 21.9 42 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpenoid cyclase N-terminal domain
35c3hrdH_



not modelled 20.1 18 PDB header:oxidoreductase
Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
36c1ffuA_



not modelled 19.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
37c3g5rA_



not modelled 19.6 33 PDB header:transferase
Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)-
PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate
38c3nbxX_



not modelled 19.3 18 PDB header:hydrolase
Chain: X: PDB Molecule:atpase rava;
PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp
39d2yvta1



not modelled 18.7 14 Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:TT1561-like
40d1di0a_



not modelled 17.8 9 Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
41c2obxH_



not modelled 17.7 13 PDB header:transferase
Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1;
PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
42c1rm6F_



not modelled 17.7 26 PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
43c1kcfB_



not modelled 17.7 31 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
44c3b9jI_



not modelled 17.7 23 PDB header:oxidoreductase
Chain: I: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
45d1ejba_



not modelled 17.4 9 Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
46d1rvv1_



not modelled 17.0 9 Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
47d1vqqa1



not modelled 16.9 36 Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
48d1c41a_



not modelled 16.1 11 Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
49c2j63B_



not modelled 16.1 19 PDB header:lyase
Chain: B: PDB Molecule:ap-endonuclease;
PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major
50d1m5wa_



not modelled 15.9 11 Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
51d2q4qa1



not modelled 15.9 23 Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
52d1hd7a_



not modelled 15.9 4 Fold:DNase I-like
Superfamily:DNase I-like
Family:DNase I-like
53c2yvaB_



not modelled 15.8 14 PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
54c3trjC_



not modelled 15.8 13 PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
55c3oqvA_



not modelled 15.7 17 PDB header:protein binding
Chain: A: PDB Molecule:albc;
PDBTitle: albc, a cyclodipeptide synthase from streptomyces noursei
56c2x7mA_



not modelled 15.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution
57d1b24a2



not modelled 15.6 18 Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
58c2hjpA_



not modelled 14.9 8 PDB header:hydrolase
Chain: A: PDB Molecule:phosphonopyruvate hydrolase;
PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++
59d1qh8b_



not modelled 14.9 15 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
60d1iowa1



not modelled 14.8 10 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:D-Alanine ligase N-terminal domain
61d2dfaa1



not modelled 14.7 17 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
62d1zq1a2



not modelled 14.6 11 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
63d1q74a_



not modelled 14.2 20 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
64c3g4dB_



not modelled 14.2 33 PDB header:lyase
Chain: B: PDB Molecule:(+)-delta-cadinene synthase isozyme xc1;
PDBTitle: crystal structure of (+)-delta-cadinene synthase from gossypium2 arboreum and evolutionary divergence of metal binding motifs for3 catalysis
65c2j5cB_



not modelled 14.1 33 PDB header:lyase
Chain: B: PDB Molecule:1,8-cineole synthase;
PDBTitle: rational conversion of substrate and product specificity2 in a monoterpene synthase. structural insights into the3 molecular basis of rapid evolution.
66d1hc7a1



not modelled 13.9 9 Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
67c3g6sA_



not modelled 13.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:putative endonuclease/exonuclease/phosphatase
PDBTitle: crystal structure of the2 endonuclease/exonuclease/phosphatase (bvu_0621) from3 bacteroides vulgatus. northeast structural genomics4 consortium target bvr56d
68c2xhzC_



not modelled 13.7 12 PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
69c3mk3L_



not modelled 13.7 6 PDB header:transferase
Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase;
PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2
70d1uana_



not modelled 13.6 26 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
71d1vyba_



not modelled 13.6 32 Fold:DNase I-like
Superfamily:DNase I-like
Family:DNase I-like
72c2x9qA_



not modelled 13.5 11 PDB header:ligase
Chain: A: PDB Molecule:cyclodipeptide synthetase;
PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases.
73d1wsaa_



not modelled 13.2 40 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
74d1kz1a_



not modelled 13.1 10 Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
75d1nj8a1



not modelled 13.0 10 Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
76c1n20A_



not modelled 13.0 42 PDB header:isomerase
Chain: A: PDB Molecule:(+)-bornyl diphosphate synthase;
PDBTitle: (+)-bornyl diphosphate synthase: complex with mg and 3-aza-2 2,3-dihydrogeranyl diphosphate
77d1nqua_



not modelled 13.0 6 Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
78d1iwpb_



not modelled 12.8 17 Fold:Anticodon-binding domain-like
Superfamily:B12-dependent dehydatase associated subunit
Family:Diol dehydratase, beta subunit
79d2cula1



not modelled 12.7 11 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GidA-like
80d2d6fa2



not modelled 12.5 13 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
81d1uh5a_



not modelled 12.3 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
82c1hx9A_



not modelled 12.3 42 PDB header:lyase
Chain: A: PDB Molecule:5-epi-aristolochene synthase;
PDBTitle: crystal structure of teas w273s form 1
83c2ongA_



not modelled 12.0 25 PDB header:lyase
Chain: A: PDB Molecule:4s-limonene synthase;
PDBTitle: crystal structure of of limonene synthase with 2-2 fluorogeranyl diphosphate (fgpp).
84d1nj1a1



not modelled 12.0 12 Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
85c3r89A_



not modelled 11.9 10 PDB header:lyase
Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase;
PDBTitle: crystal structure of orotidine 5-phosphate decarboxylase from2 anaerococcus prevotii dsm 20548
86c2jc5A_



not modelled 11.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease;
PDBTitle: apurinic apyrimidinic (ap) endonuclease (nape) from2 neisseria meningitidis
87d2pd4a1



not modelled 11.7 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
88d2gc6a1



not modelled 11.7 6 Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
89c3lo3E_



not modelled 11.4 35 PDB header:structure genomics, unknown function
Chain: E: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h.
90c2bibA_



not modelled 11.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:teichoic acid phosphorylcholine esterase/ choline binding
PDBTitle: crystal structure of the complete modular teichioic acid2 phosphorylcholine esterase pce (cbpe) from streptococcus3 pneumoniae
91c3lx6B_



not modelled 11.4 26 PDB header:transferase
Chain: B: PDB Molecule:cytosine-specific methyltransferase;
PDBTitle: structure of probable cytosine-specific methyltransferase from2 shigella flexneri
92d3bzka5



not modelled 11.3 6 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
93c2ixdB_



not modelled 11.3 18 PDB header:hydrolase
Chain: B: PDB Molecule:lmbe-related protein;
PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus
94c1zlpA_



not modelled 11.2 11 PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
95c3tebA_



not modelled 11.2 6 PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease/exonuclease/phosphatase;
PDBTitle: endonuclease/exonuclease/phosphatase family protein from leptotrichia2 buccalis c-1013-b
96c3iv4A_



not modelled 11.2 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: a putative oxidoreductase with a thioredoxin fold
97c3n0fA_



not modelled 11.2 42 PDB header:lyase
Chain: A: PDB Molecule:isoprene synthase;
PDBTitle: crystal structure of isoprene synthase from grey poplar leaves2 (populus x canescens)
98d1v6ta_



not modelled 10.8 17 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
99d1eexb_



not modelled 10.7 11 Fold:Anticodon-binding domain-like
Superfamily:B12-dependent dehydatase associated subunit
Family:Diol dehydratase, beta subunit

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0