Email l.a.kelley@imperial.ac.uk Description P28912 Date Thu Jan 5 11:45:24 GMT 2012 Unique Job ID 7cd5438d21624744

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1musa_ 97.7 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 2 d1b7ea_ 97.7 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 3 d2v9va2 79.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 4 c2v9vA_ 65.1 12 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 5 d2ezha_ 50.9 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 6 d2ezia_ 49.1 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 7 c6paxA_ 43.9 22 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 8 c3hefB_ 40.9 22 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 9 c2plyB_ 22.7 11 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 10 d1e8qa_ 20.2 36 Fold:Cellulose docking domain, dockering Superfamily:Cellulose docking domain, dockering Family:Cellulose docking domain, dockering 11 d1pdnc_ 19.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 12 d1dlwa_ 19.4 11 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 13 c2rfpA_ 16.4 15 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 14 d1ajza_ 15.5 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 15 c3aq8A_ 15.3 4 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 16 d2fgga1 15.3 31 Fold:dsRBD-like Superfamily:Rv2632c-like Family:Rv2632c-like 17 c2kvcA_ 15.2 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 18 c3mx7A_ 14.8 29 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd 19 c2vp8A_ 14.8 18 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 20 d1s69a_ 14.5 21 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 21 d1iyxa1 not modelled 13.3 19 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 22 c2k27A_ not modelled 13.2 25 PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain 23 c3ol4B_ not modelled 12.7 26 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 24 c3e2dB_ not modelled 12.4 17 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 25 c2j4mA_ not modelled 11.9 36 PDB header:protein binding Chain: A: PDB Molecule:endoglucanase 45a; PDBTitle: double dockerin from piromyces equi cel45a 26 d1idra_ not modelled 11.7 7 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 27 c1qcrD_ not modelled 11.3 8 PDB header: PDB COMPND: 28 d1mpga1 not modelled 11.3 11 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 29 d1g9ga_ not modelled 10.5 63 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 30 d1md6a_ not modelled 10.3 17 Fold:beta-Trefoil Superfamily:Cytokine Family:Interleukin-1 (IL-1) 31 c2y5sA_ not modelled 10.1 15 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 32 c2kzvA_ not modelled 9.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a 33 d3bpya1 not modelled 9.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 34 d1osna_ not modelled 9.7 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 35 c3rf7A_ not modelled 9.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 36 c1e17A_ not modelled 8.8 9 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 37 d2c6ya1 not modelled 8.8 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 38 c3r1iB_ not modelled 8.7 25 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: crystal structure of a short-chain type dehydrogenase/reductase from2 mycobacterium marinum 39 c1dlyA_ not modelled 8.5 12 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin; PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos 40 d1dlya_ not modelled 8.5 12 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 41 c3gk0H_ not modelled 8.4 20 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 42 c1l2aD_ not modelled 8.4 50 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 43 d1l1ya_ not modelled 8.4 50 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 44 d1w6ta1 not modelled 8.4 20 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 45 c3co7C_ not modelled 8.4 14 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 46 d2ilaa_ not modelled 8.1 22 Fold:beta-Trefoil Superfamily:Cytokine Family:Interleukin-1 (IL-1) 47 c3cwbQ_ not modelled 7.9 8 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 48 d2ptza1 not modelled 7.8 13 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 49 c3nswA_ not modelled 7.8 38 PDB header:immune system Chain: A: PDB Molecule:excretory-secretory protein 2; PDBTitle: crystal structure of ancylostoma ceylanicum excretory-secretory2 protein 2 50 d2ezla_ not modelled 7.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 51 c2yf3F_ not modelled 7.7 20 PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese 52 c2x4mD_ not modelled 7.7 27 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 53 c1hj0A_ not modelled 7.6 19 PDB header:actin binding peptide Chain: A: PDB Molecule:thymosin beta9; PDBTitle: thymosin beta9 54 d1g31a_ not modelled 7.6 13 Fold:GroES-like Superfamily:GroES-like Family:GroES 55 d2abka_ not modelled 7.3 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 56 c3hluA_ not modelled 7.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 57 c1p84D_ not modelled 7.1 11 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 58 d1vi7a1 not modelled 7.1 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 59 c2jpiA_ not modelled 7.1 17 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa 60 d1rh6a_ not modelled 7.0 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 61 d1eyea_ not modelled 6.8 19 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 62 c3g73A_ not modelled 6.8 17 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 63 d2a22a1 not modelled 6.7 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 64 d2giab1 not modelled 6.7 63 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Guide RNA binding protein gBP 65 c2giaB_ not modelled 6.7 63 PDB header:translation Chain: B: PDB Molecule:mitochondrial rna-binding protein 1; PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2 66 d1m5wa_ not modelled 6.6 24 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 67 d1pcna1 not modelled 6.5 36 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 68 c1gmuB_ not modelled 6.5 9 PDB header:metallochaperone Chain: B: PDB Molecule:uree; PDBTitle: structure of uree 69 d1ogla_ not modelled 6.5 18 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:Type II deoxyuridine triphosphatase 70 d1un2a_ not modelled 6.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 71 c3douA_ not modelled 6.4 21 PDB header:transferase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j; PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1 72 c3a44D_ not modelled 6.4 0 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 73 c3k6qB_ not modelled 6.4 14 PDB header:ligand binding protein Chain: B: PDB Molecule:putative ligand binding protein; PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution 74 d1d5va_ not modelled 6.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 75 d1xb4a2 not modelled 6.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 76 c1c94B_ not modelled 6.3 63 PDB header:gene regulation Chain: B: PDB Molecule:retro-gcn4 leucine zipper; PDBTitle: reversing the sequence of the gcn4 leucine zipper does not2 affect its fold. 77 d1ha7a_ not modelled 6.2 17 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 78 c2iucB_ not modelled 6.1 25 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 79 c2b99A_ not modelled 6.1 18 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor 80 d2hfha_ not modelled 6.0 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 81 c3a52A_ not modelled 6.0 18 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 82 d1pm6a_ not modelled 6.0 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 83 d1j3aa_ not modelled 6.0 13 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 84 d2czda1 not modelled 5.9 28 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 85 c2kl8A_ not modelled 5.9 14 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 86 d2o0ma1 not modelled 5.9 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 87 c2o0mA_ not modelled 5.9 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis 88 c3emkA_ not modelled 5.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis 89 d2a07f1 not modelled 5.8 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 90 d1f6ya_ not modelled 5.8 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 91 c2y6xA_ not modelled 5.8 11 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kd protein; PDBTitle: structure of psb27 from thermosynechococcus elongatus 92 d1yqea1 not modelled 5.8 13 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 93 d2i7pa1 not modelled 5.6 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 94 d1dqwa_ not modelled 5.6 27 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 95 c2dfjA_ not modelled 5.5 17 PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a 96 c2wdzD_ not modelled 5.5 16 PDB header:oxidoreductase Chain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol 97 d1xi8a3 not modelled 5.5 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 98 c3n1uA_ not modelled 5.5 15 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila 99 c3pk0B_ not modelled 5.5 16 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: crystal structure of short-chain dehydrogenase/reductase sdr from2 mycobacterium smegmatis