Secondary structure and disorder prediction

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Sequence		M	N	K	T	Q	L	I	D	V	I	A	E	K	A	E	L	S	K	T	Q	A	K	A	A	L	E	S	T	L	A	A	I	T	E	S	L	K	E	G	D	A	V	Q	L	V	G	F	G	T	F	K	V	N	H	R	A	E	R	T	G
Secondary structure
SS confidence
Disorder		?	?																																					?	?														?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Sequence		R	N	P	Q	T	G	K	E	I	K	I	A	A	A	N	V	P	A	F	V	S	G	K	A	L	K	D	A	V	K
Secondary structure
SS confidence
Disorder		?	?	?									?	?	?															?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2iif chain A Region: 1 - 89 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 37% PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna Phyre2 PDB 1p71 chain A Region: 1 - 89 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 47% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 3c4i chain A Region: 1 - 89 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 42% PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] Phyre2 PDB 1owf chain A Region: 1 - 89 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 37% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1owf chain B Region: 1 - 89 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 34% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2np2 chain B Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 32% PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex Phyre2 PDB 1exe chain A Region: 1 - 89 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 39% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1huu chain A Region: 1 - 90 Aligned: 80 Modelled: 90 Confidence: 99.8% Identity: 58% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1mul chain A Region: 1 - 90 Aligned: 76 Modelled: 76 Confidence: 99.8% Identity: 95% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2o97 chain B domain 1 Region: 1 - 89 Aligned: 70 Modelled: 71 Confidence: 99.6% Identity: 70% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1b8z chain A Region: 1 - 90 Aligned: 67 Modelled: 67 Confidence: 99.6% Identity: 54% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2ysk chain A Region: 4 - 40 Aligned: 37 Modelled: 37 Confidence: 42.6% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus Phyre2 PDB 1o17 chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 42.5% Identity: 17% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1brw chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 41.2% Identity: 17% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1dul chain A Region: 1 - 31 Aligned: 31 Modelled: 27 Confidence: 41.0% Identity: 10% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 1z67 chain A domain 1 Region: 4 - 42 Aligned: 39 Modelled: 39 Confidence: 30.8% Identity: 21% Fold: YidB-like Superfamily: YidB-like Family: YidB-like Phyre2 PDB 1nri chain A Region: 1 - 49 Aligned: 49 Modelled: 49 Confidence: 29.2% Identity: 16% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 1nri chain A Region: 1 - 49 Aligned: 49 Modelled: 49 Confidence: 29.2% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae Phyre2 PDB 1khd chain A domain 1 Region: 2 - 30 Aligned: 29 Modelled: 29 Confidence: 28.9% Identity: 0% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 2tpt chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 28.7% Identity: 10% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 1 c2iifA_ 2 d1p71a_ 3 c3c4iA_ 4 d1owfa_ 5 d1owfb_ 6 c2np2B_ 7 d1exea_ 8 d1huua_ 9 d1mula_ 10 d2o97b1 11 d1b8za_ 12 c2yskA_ 13 d1o17a1 14 d1brwa1 15 d1dula_ 16 d1z67a1 17 d1nria_ 18 c1nriA_ 19 d1khda1 20 d2tpta1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2iifA_ 99.9 37 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 2 d1p71a_ 99.9 47 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 3 c3c4iA_ 99.9 42 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 4 d1owfa_ 99.9 37 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 5 d1owfb_ 99.9 34 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 6 c2np2B_ 99.9 32 PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex 7 d1exea_ 99.9 39 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 8 d1huua_ 99.8 58 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 9 d1mula_ 99.8 95 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 10 d2o97b1 99.6 70 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 11 d1b8za_ 99.6 54 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 12 c2yskA_ 42.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus 13 d1o17a1 42.5 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 14 d1brwa1 41.2 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 15 d1dula_ 41.0 10 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 16 d1z67a1 30.8 21 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 17 d1nria_ 29.2 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 18 c1nriA_ 29.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 19 d1khda1 28.9 0 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 20 d2tpta1 28.7 10 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 c3mzyA_ not modelled 26.7 14 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 22 c3cvjB_ not modelled 26.6 13 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 23 d1i27a_ not modelled 25.7 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 24 d1z6ra1 not modelled 25.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 25 c1o17A_ not modelled 24.6 17 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 26 d2cp9a1 not modelled 24.5 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 27 d1aipc1 not modelled 23.8 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 28 c2krcA_ not modelled 22.8 14 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 29 d1uoua1 not modelled 21.7 15 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 30 d2o4ta1 not modelled 21.7 13 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 31 d1nh2d1 not modelled 21.0 21 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 32 c2v79B_ not modelled 20.8 13 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 33 c2vn2B_ not modelled 20.4 17 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 34 d1xb2b1 not modelled 19.9 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 35 c3tsuA_ not modelled 18.6 37 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 36 d1hq1a_ not modelled 18.4 12 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 37 d1ee8a1 not modelled 17.4 14 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 38 d1tdza1 not modelled 16.6 14 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 39 c1otpA_ not modelled 16.5 10 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 40 d1qzxa2 not modelled 16.5 27 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 41 d1k82a1 not modelled 16.0 18 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 42 d1vola2 not modelled 15.8 17 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 43 d1ussa_ not modelled 15.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 44 d1qb2a_ not modelled 14.9 16 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 45 c3g2bA_ not modelled 14.8 6 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 46 d2ffha2 not modelled 14.7 12 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 47 c2jqeA_ not modelled 14.3 24 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 48 c1khdD_ not modelled 14.2 0 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 49 d1r2za1 not modelled 13.9 29 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 50 c1l0oC_ not modelled 13.6 24 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 51 d1l0oc_ not modelled 13.6 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 52 d1g8ia_ not modelled 13.6 7 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 53 d1k3xa1 not modelled 13.4 19 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 54 c3bwgA_ not modelled 13.2 31 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 55 c1tr8A_ not modelled 13.0 21 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 56 d1njra_ not modelled 11.9 21 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 57 c1vquB_ not modelled 11.4 21 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 58 d1nvpd1 not modelled 11.1 17 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 59 d1uxda_ not modelled 11.1 35 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 60 d1smyf2 not modelled 11.0 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 61 d1z05a1 not modelled 11.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 62 c3a4cA_ not modelled 10.4 11 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 63 d1efub3 not modelled 10.2 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 64 d1v8ga1 not modelled 10.2 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 65 c2kloA_ not modelled 10.0 11 PDB header:cell cycle Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: structure of the cdt1 c-terminal domain 66 c1brwB_ not modelled 10.0 17 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 67 d1mkma1 not modelled 9.9 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 68 c2l8nA_ not modelled 9.8 30 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 69 c2dsjA_ not modelled 9.8 23 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 70 d2elca1 not modelled 9.6 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 71 d1uxca_ not modelled 9.6 35 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 72 d1aisb2 not modelled 9.6 22 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 73 c1aipG_ not modelled 9.5 27 PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus 74 d2bjca1 not modelled 9.4 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 75 c2v3cC_ not modelled 9.4 19 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 76 c3edpB_ not modelled 9.2 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 77 c2kjwA_ not modelled 8.8 14 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 78 d1qpza1 not modelled 8.8 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 79 c2lcvA_ not modelled 8.6 30 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 80 d2j5aa1 not modelled 8.4 26 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 81 c3thgA_ not modelled 8.4 7 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 82 c3kfoA_ not modelled 8.3 14 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup133; PDBTitle: crystal structure of the c-terminal domain from the nuclear pore2 complex component nup133 from saccharomyces cerevisiae 83 d1x92a_ not modelled 8.3 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 84 d1tk9a_ not modelled 8.1 20 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 85 d2hsga1 not modelled 8.0 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 86 d1lcda_ not modelled 8.0 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 87 d1qjha_ not modelled 7.7 14 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 88 c3r3tA_ not modelled 7.6 15 PDB header:rna binding protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: crystal structure of 30s ribosomal protein s from bacillus anthracis 89 d2fq4a1 not modelled 7.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 90 d2i10a1 not modelled 7.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 91 d1u5ta1 not modelled 7.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 92 d1vr3a1 not modelled 7.0 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 93 c1dpuA_ not modelled 6.8 12 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 94 d1dpua_ not modelled 6.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 95 c2bpqB_ not modelled 6.8 19 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 96 c1xb2B_ not modelled 6.7 29 PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex 97 c2kz3A_ not modelled 6.5 26 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 98 d1x2na1 not modelled 6.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 99 c1rp3G_ not modelled 6.4 18 PDB header:transcription Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia); PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0