Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	K	L	L	E	R	F	L	N	Y	V	S	L	D	T	Q	S	K	A	G	V	R	Q	V	P	S	T	E	G	Q	W	K	L	L	H	L	L	K	E	Q	L	E	E	M	G	L	I	N	V	T	L	S	E	K	G	T	L	M	A
Secondary structure
SS confidence
Disorder		?																		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	L	P	A	N	V	P	G	D	I	P	A	I	G	F	I	S	H	V	D	T	S	P	D	C	S	G	K	N	V	N	P	Q	I	V	E	N	Y	R	G	G	D	I	A	L	G	I	G	D	E	V	L	S	P	V	M	F	P	V	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	Q	L	L	G	Q	T	L	I	T	T	D	G	K	T	L	L	G	A	D	D	K	A	G	I	A	E	I	M	T	A	L	A	V	L	Q	Q	K	K	I	P	H	G	D	I	R	V	A	F	T	P	D	E	E	V	G	K	G	A	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		H	F	D	V	D	A	F	D	A	R	W	A	Y	T	V	D	G	G	G	V	G	E	L	E	F	E	N	F	N	A	A	S	V	N	I	K	I	V	G	N	N	V	H	P	G	T	A	K	G	V	M	V	N	A	L	S	L	A	A	R
Secondary structure
SS confidence
Disorder																																													?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	H	A	E	V	P	A	D	E	S	P	E	M	T	E	G	Y	E	G	F	Y	H	L	A	S	M	K	G	T	V	E	R	A	D	M	H	Y	I	I	R	D	F	D	R	K	Q	F	E	A	R	K	R	K	M	M	E	I	A	K	K
Secondary structure
SS confidence
Disorder									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	G	K	G	L	H	P	D	C	Y	I	E	L	V	I	E	D	S	Y	Y	N	M	R	E	K	V	V	E	H	P	H	I	L	D	I	A	Q	Q	A	M	R	D	C	D	I	E	P	E	L	K	P	I	R	G	G	T	D	G	A	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Sequence		L	S	F	M	G	L	P	C	P	N	L	F	T	G	G	Y	N	Y	H	G	K	H	E	F	V	T	L	E	G	M	E	K	A	V	Q	V	I	V	R	I	A	E	L	T	A	Q	R	K
Secondary structure
SS confidence
Disorder																																															?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vix chain A Region: 1 - 408 Aligned: 408 Modelled: 408 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of a putative peptidase t Phyre2 PDB 3ife chain A Region: 2 - 407 Aligned: 405 Modelled: 406 Confidence: 100.0% Identity: 53% PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: 1.55 angstrom resolution crystal structure of peptidase t (pept-1)2 from bacillus anthracis str. 'ames ancestor'. Phyre2 PDB 3gb0 chain A Region: 2 - 406 Aligned: 358 Modelled: 372 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of aminopeptidase pept (np_980509.1) from bacillus2 cereus atcc 10987 at 2.04 a resolution Phyre2 PDB 3rza chain A Region: 2 - 407 Aligned: 358 Modelled: 372 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:tripeptidase; PDBTitle: crystal structure of a tripeptidase (sav1512) from staphylococcus2 aureus subsp. aureus mu50 at 2.10 a resolution Phyre2 PDB 3pfe chain A Region: 2 - 407 Aligned: 371 Modelled: 375 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a m20a metallo peptidase (dape, lpg0809) from2 legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.503 a resolution Phyre2 PDB 3pfo chain B Region: 1 - 406 Aligned: 363 Modelled: 375 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:putative acetylornithine deacetylase; PDBTitle: crystal structure of a putative acetylornithine deacetylase (rpa2325)2 from rhodopseudomonas palustris cga009 at 1.90 a resolution Phyre2 PDB 3mru chain B Region: 2 - 407 Aligned: 359 Modelled: 384 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus Phyre2 PDB 2zog chain A Region: 2 - 408 Aligned: 370 Modelled: 378 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:cytosolic non-specific dipeptidase; PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin Phyre2 PDB 2qyv chain B Region: 2 - 407 Aligned: 349 Modelled: 357 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:xaa-his dipeptidase; PDBTitle: crystal structure of putative xaa-his dipeptidase (yp_718209.1) from2 haemophilus somnus 129pt at 2.11 a resolution Phyre2 PDB 3dlj chain B Region: 2 - 406 Aligned: 370 Modelled: 380 Confidence: 100.0% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:beta-ala-his dipeptidase; PDBTitle: crystal structure of human carnosine dipeptidase 1 Phyre2 PDB 2pok chain B Region: 2 - 404 Aligned: 359 Modelled: 378 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of a m20 family metallo peptidase from streptococcus2 pneumoniae Phyre2 PDB 1vix chain A domain 1 Region: 1 - 408 Aligned: 295 Modelled: 295 Confidence: 100.0% Identity: 100% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: Bacterial dinuclear zinc exopeptidases Phyre2 PDB 1cg2 chain D Region: 2 - 406 Aligned: 358 Modelled: 376 Confidence: 100.0% Identity: 20% PDB header:metallocarboxypeptidase Chain: D: PDB Molecule:carboxypeptidase g2; PDBTitle: carboxypeptidase g2 Phyre2 PDB 1lfw chain A Region: 1 - 408 Aligned: 360 Modelled: 367 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:pepv; PDBTitle: crystal structure of pepv Phyre2 PDB 1vgy chain B Region: 2 - 404 Aligned: 351 Modelled: 378 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase Phyre2 PDB 3n5f chain B Region: 2 - 406 Aligned: 346 Modelled: 354 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:n-carbamoyl-l-amino acid hydrolase; PDBTitle: crystal structure of l-n-carbamoylase from geobacillus2 stearothermophilus cect43 Phyre2 PDB 3ic1 chain A Region: 2 - 406 Aligned: 351 Modelled: 369 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae Phyre2 PDB 2rb7 chain A Region: 2 - 406 Aligned: 341 Modelled: 351 Confidence: 100.0% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of co-catalytic metallopeptidase (yp_387682.1) from2 desulfovibrio desulfuricans g20 at 1.60 a resolution Phyre2 PDB 1fno chain A domain 4 Region: 1 - 407 Aligned: 294 Modelled: 293 Confidence: 100.0% Identity: 93% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: Bacterial dinuclear zinc exopeptidases Phyre2 PDB 2imo chain A Region: 1 - 408 Aligned: 349 Modelled: 343 Confidence: 100.0% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:allantoate amidohydrolase; PDBTitle: crystal structure of allantoate amidohydrolase from escherichia coli2 at ph 4.6 Phyre2 1 c1vixA_ 2 c3ifeA_ 3 c3gb0A_ 4 c3rzaA_ 5 c3pfeA_ 6 c3pfoB_ 7 c3mruB_ 8 c2zogA_ 9 c2qyvB_ 10 c3dljB_ 11 c2pokB_ 12 d1vixa1 13 c1cg2D_ 14 c1lfwA_ 15 c1vgyB_ 16 c3n5fB_ 17 c3ic1A_ 18 c2rb7A_ 19 d1fnoa4 20 c2imoA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vixA_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of a putative peptidase t 2 c3ifeA_ 100.0 53 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: 1.55 angstrom resolution crystal structure of peptidase t (pept-1)2 from bacillus anthracis str. 'ames ancestor'. 3 c3gb0A_ 100.0 29 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of aminopeptidase pept (np_980509.1) from bacillus2 cereus atcc 10987 at 2.04 a resolution 4 c3rzaA_ 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidase; PDBTitle: crystal structure of a tripeptidase (sav1512) from staphylococcus2 aureus subsp. aureus mu50 at 2.10 a resolution 5 c3pfeA_ 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a m20a metallo peptidase (dape, lpg0809) from2 legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.503 a resolution 6 c3pfoB_ 100.0 15 PDB header:hydrolase Chain: B: PDB Molecule:putative acetylornithine deacetylase; PDBTitle: crystal structure of a putative acetylornithine deacetylase (rpa2325)2 from rhodopseudomonas palustris cga009 at 1.90 a resolution 7 c3mruB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus 8 c2zogA_ 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:cytosolic non-specific dipeptidase; PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin 9 c2qyvB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:xaa-his dipeptidase; PDBTitle: crystal structure of putative xaa-his dipeptidase (yp_718209.1) from2 haemophilus somnus 129pt at 2.11 a resolution 10 c3dljB_ 100.0 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-ala-his dipeptidase; PDBTitle: crystal structure of human carnosine dipeptidase 1 11 c2pokB_ 100.0 17 PDB header:hydrolase Chain: B: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of a m20 family metallo peptidase from streptococcus2 pneumoniae 12 d1vixa1 100.0 100 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 13 c1cg2D_ 100.0 20 PDB header:metallocarboxypeptidase Chain: D: PDB Molecule:carboxypeptidase g2; PDBTitle: carboxypeptidase g2 14 c1lfwA_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:pepv; PDBTitle: crystal structure of pepv 15 c1vgyB_ 100.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase 16 c3n5fB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:n-carbamoyl-l-amino acid hydrolase; PDBTitle: crystal structure of l-n-carbamoylase from geobacillus2 stearothermophilus cect43 17 c3ic1A_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae 18 c2rb7A_ 100.0 14 PDB header:hydrolase Chain: A: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of co-catalytic metallopeptidase (yp_387682.1) from2 desulfovibrio desulfuricans g20 at 1.60 a resolution 19 d1fnoa4 100.0 93 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 20 c2imoA_ 100.0 14 PDB header:hydrolase Chain: A: PDB Molecule:allantoate amidohydrolase; PDBTitle: crystal structure of allantoate amidohydrolase from escherichia coli2 at ph 4.6 21 c3tx8A_ not modelled 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a succinyl-diaminopimelate desuccinylase (arge)2 from corynebacterium glutamicum atcc 13032 at 2.97 a resolution 22 c2f7vA_ not modelled 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:aectylcitrulline deacetylase; PDBTitle: structure of acetylcitrulline deacetylase complexed with2 one co 23 c3khzA_ not modelled 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form 24 c2v8gD_ not modelled 100.0 16 PDB header:hydrolase Chain: D: PDB Molecule:beta-alanine synthase; PDBTitle: crystal structure of beta-alanine synthase from2 saccharomyces kluyveri in complex with the product beta-3 alanine 25 c1ysjB_ not modelled 100.0 15 PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family 26 c3ct9B_ not modelled 100.0 15 PDB header:hydrolase Chain: B: PDB Molecule:acetylornithine deacetylase; PDBTitle: crystal structure of a putative zinc peptidase (np_812461.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution 27 c2q43A_ not modelled 100.0 14 PDB header:hydrolase Chain: A: PDB Molecule:iaa-amino acid hydrolase ilr1-like 2; PDBTitle: ensemble refinement of the protein crystal structure of iaa-aminoacid2 hydrolase from arabidopsis thaliana gene at5g56660 28 c3ramC_ not modelled 100.0 17 PDB header:hydrolase Chain: C: PDB Molecule:hmra protein; PDBTitle: crystal structure of hmra 29 c1vheA_ not modelled 100.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:aminopeptidase/glucanase homolog; PDBTitle: crystal structure of a aminopeptidase/glucanase homolog 30 d1lfwa1 not modelled 100.0 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 31 c3kl9F_ not modelled 100.0 12 PDB header:hydrolase Chain: F: PDB Molecule:glutamyl aminopeptidase; PDBTitle: crystal structure of pepa from streptococcus pneumoniae 32 d1z2la1 not modelled 100.0 15 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 33 c1yloA_ not modelled 100.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sf2450; PDBTitle: crystal structure of protein of unknown function (possible2 aminopeptidase) s2589 from shigella flexneri 2a str. 2457t 34 c1vhoA_ not modelled 100.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of a putative peptidase/endoglucanase 35 c2cf4A_ not modelled 100.0 13 PDB header:hydrolase Chain: A: PDB Molecule:protein ph0519; PDBTitle: pyrococcus horikoshii tet1 peptidase can assemble into a2 tetrahedron or a large octahedral shell 36 c1y0yA_ not modelled 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:frv operon protein frvx; PDBTitle: crystal structure of tetrahedral aminopeptidase from p. horikoshii in2 complex with amastatin 37 c3io1B_ not modelled 100.0 12 PDB header:hydrolase Chain: B: PDB Molecule:aminobenzoyl-glutamate utilization protein; PDBTitle: crystal structure of aminobenzoyl-glutamate utilization2 protein from klebsiella pneumoniae 38 c2pe3A_ not modelled 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:354aa long hypothetical operon protein frv; PDBTitle: crystal structure of frv operon protein frvx (ph1821)from pyrococcus2 horikoshii ot3 39 c3isxA_ not modelled 100.0 14 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase (tm1050) from thermotoga2 maritima at 1.40 a resolution 40 c2fvgA_ not modelled 100.0 14 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase (tm1049) from thermotoga maritima2 at 2.01 a resolution 41 c3t6mA_ not modelled 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of the catalytic domain of dape protein from2 v.cholerea in the zn bound form 42 d1cg2a1 not modelled 100.0 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 43 d1vhea2 not modelled 100.0 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 44 d1yloa2 not modelled 100.0 19 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 45 d1vhoa2 not modelled 100.0 21 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 46 d1xfoa2 not modelled 100.0 21 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 47 c3cpxC_ not modelled 100.0 13 PDB header:hydrolase Chain: C: PDB Molecule:aminopeptidase, m42 family; PDBTitle: crystal structure of putative m42 glutamyl aminopeptidase2 (yp_676701.1) from cytophaga hutchinsonii atcc 33406 at 2.39 a3 resolution 48 c2greC_ not modelled 99.9 24 PDB header:hydrolase Chain: C: PDB Molecule:deblocking aminopeptidase; PDBTitle: crystal structure of deblocking aminopeptidase from bacillus cereus 49 d1r3na1 not modelled 99.9 20 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 50 c1q7lA_ not modelled 99.9 21 PDB header:hydrolase Chain: A: PDB Molecule:aminoacylase-1; PDBTitle: zn-binding domain of the t347g mutant of human aminoacylase-2 i 51 d2fvga2 not modelled 99.9 21 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 52 d1xmba1 not modelled 99.9 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 53 d1vgya1 not modelled 99.9 13 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 54 d2grea2 not modelled 99.9 21 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 55 d1ysja1 not modelled 99.8 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 56 d1tkja1 not modelled 99.7 25 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 57 c3l6sA_ not modelled 99.7 16 PDB header:hydrolase Chain: A: PDB Molecule:aspartyl aminopeptidase; PDBTitle: crystal structure of human aspartyl aminopeptidase (dnpep),2 in complex with aspartic acid hydroxamate 58 d1rtqa_ not modelled 99.6 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 59 d1y0ya2 not modelled 99.6 22 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 60 c2glfB_ not modelled 99.5 13 PDB header:hydrolase Chain: B: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: crystal structure of aminipeptidase (m18 family) from thermotoga2 maritima 61 c1y7eA_ not modelled 99.5 15 PDB header:hydrolase Chain: A: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: the crystal structure of aminopeptidase i from borrelia burgdorferi2 b31 62 c2ijzF_ not modelled 99.5 17 PDB header:hydrolase Chain: F: PDB Molecule:probable m18-family aminopeptidase 2; PDBTitle: crystal structure of aminopeptidase 63 c1q7lB_ not modelled 99.5 13 PDB header:hydrolase Chain: B: PDB Molecule:aminoacylase-1; PDBTitle: zn-binding domain of the t347g mutant of human aminoacylase-2 i 64 c3tc8A_ not modelled 99.4 22 PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase; PDBTitle: crystal structure of a hypothetical zn-dependent exopeptidase2 (bdi_3547) from parabacteroides distasonis atcc 8503 at 1.06 a3 resolution 65 d1y7ea2 not modelled 99.3 14 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 66 c3pb6X_ not modelled 99.3 20 PDB header:transferase Chain: X: PDB Molecule:glutaminyl-peptide cyclotransferase-like protein; PDBTitle: crystal structure of the catalytic domain of human golgi-resident2 glutaminyl cyclase at ph 6.5 67 d2afwa1 not modelled 99.3 14 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Glutaminyl-peptide cyclotransferase-like 68 d1z2la2 not modelled 99.2 11 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 69 d1cg2a2 not modelled 99.2 19 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 70 d1r3na2 not modelled 99.2 10 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 71 c3guxA_ not modelled 99.1 18 PDB header:hydrolase Chain: A: PDB Molecule:putative zn-dependent exopeptidase; PDBTitle: crystal structure of a putative zn-dependent exopeptidase (bvu_1317)2 from bacteroides vulgatus atcc 8482 at 1.80 a resolution 72 d1vgya2 not modelled 99.1 11 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 73 c2gljR_ not modelled 98.9 11 PDB header:hydrolase Chain: R: PDB Molecule: PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum 74 c3iibA_ not modelled 98.9 26 PDB header:hydrolase Chain: A: PDB Molecule:peptidase m28; PDBTitle: crystal structure of peptidase m28 precursor (yp_926796.1) from2 shewanella amazonensis sb2b at 1.70 a resolution 75 d1ysja2 not modelled 98.8 14 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 76 c2ek8A_ not modelled 98.8 20 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase; PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1 77 d3bi1a3 not modelled 98.8 26 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FolH catalytic domain-like 78 d1fnoa3 not modelled 98.6 92 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 79 d1xmba2 not modelled 98.3 16 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 80 d1lfwa2 not modelled 98.2 13 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 81 d1de4c3 not modelled 98.1 15 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FolH catalytic domain-like 82 c2ootA_ not modelled 96.8 25 PDB header:hydrolase Chain: A: PDB Molecule:glutamate carboxypeptidase 2; PDBTitle: a high resolution structure of ligand-free human glutamate2 carboxypeptidase ii 83 c3rbuA_ not modelled 96.7 25 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:glutamate carboxypeptidase 2; PDBTitle: n-terminally avitev-tagged human glutamate carboxypeptidase ii in2 complex with 2-pmpa 84 c1cx8F_ not modelled 96.5 16 PDB header:metal transport Chain: F: PDB Molecule:transferrin receptor protein; PDBTitle: crytal structure of the ectodomain of human transferrin receptor 85 c3k9tA_ not modelled 93.1 20 PDB header:hydrolase Chain: A: PDB Molecule:putative peptidase; PDBTitle: crystal structure of putative peptidase (np_348812.1) from clostridium2 acetobutylicum at 2.37 a resolution 86 c2l2qA_ not modelled 84.0 6 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 87 d1iiba_ not modelled 78.8 5 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 88 d1v4na_ not modelled 46.1 13 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 89 c1wtaA_ not modelled 43.5 12 PDB header:transferase Chain: A: PDB Molecule:5'-methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum2 pernix (r32 form) 90 d1weka_ not modelled 35.6 20 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 91 d1gxha_ not modelled 32.0 17 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 92 d1wj9a2 not modelled 28.3 13 Fold:Ferredoxin-like Superfamily:CRISPR-associated protein Family:CRISPR-associated protein 93 d1ayia_ not modelled 27.8 17 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 94 c3ozbF_ not modelled 26.5 16 PDB header:transferase Chain: F: PDB Molecule:methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-methylthioinosine phosphorylase from2 psedomonas aeruginosa in complex with hypoxanthine 95 c2nv2U_ not modelled 25.7 17 PDB header:lyase/transferase Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs; PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis 96 d1jhfa1 not modelled 23.9 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 97 d1sqsa_ not modelled 21.6 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 98 c2jmkA_ not modelled 21.3 16 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein ta0956; PDBTitle: solution structure of ta0956 99 d1dfup_ not modelled 20.9 12 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 100 c3femB_ not modelled 20.6 13 PDB header:biosynthetic protein, transferase Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1; PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0