PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3gb0A_

Fold library id	PDB Header	Molecule	Title
c3gb0A_	PDB header: hydrolase	Chain: A: PDB Molecule: peptidase t;	PDBTitle: crystal structure of aminopeptidase pept (np_980509.1) from2 bacillus cereus atcc 10987 at 2.04 a resolution

Links to external resources
Added to library: Tue Mar 16 12:08:40 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G X I N Q E R L V N E F X E L V Q V D S E T K F E A E I C K V L T K K F T D L G V E V F E D D T X A V T G H G A G N L I C T L P A T K D G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S
B T T
T T
S
S S
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D T I Y F T S H X D T V V P G N G I K P S I K D G Y I V S D G T T I L G A D D K A G L A S X F E A I R V L K E K N I P H G T I E F I I T V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S
S S
T T
S S S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E E S G L V G A K A L D R E R I T A K Y G Y A L D S D G K V G E I V V A A P T Q A K V N A I I R G K T A H A G V A P E K G V S A I T I A A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T S S
G G G
S
S
T T
B
B T T T
G G G S B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A I A K X P L G R I D S E T T A N I G R F E G G T Q T N I V C D H V Q I F A E A R S L I N E K X E A Q V A K X K E A F E T T A K E X G G H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S
T T B
S S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D V E V N V X Y P G F K F A D G D H V V E V A K R A A E K I G R T P S L H Q S G G G S D A N V I A G H G I P T V N L A V G Y E E I H T T N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S
T T
B S T T S T T

. . . . . . . . . 360 . . . . . . . . . 370 . . .

Sequence K I P V E E L A K T A E L V V A I I E E V A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	X	I	N	Q	E	R	L	V	N	E	F	X	E	L	V	Q	V	D	S	E	T	K	F	E	A	E	I	C	K	V	L	T	K	K	F	T	D	L	G	V	E	V	F	E	D	D	T	X	A	V	T	G	H	G	A	G	N	L	I	C	T	L	P	A	T	K	D	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S														T	S			B	T	T																T	T							S								S	S										S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	T	I	Y	F	T	S	H	X	D	T	V	V	P	G	N	G	I	K	P	S	I	K	D	G	Y	I	V	S	D	G	T	T	I	L	G	A	D	D	K	A	G	L	A	S	X	F	E	A	I	R	V	L	K	E	K	N	I	P	H	G	T	I	E	F	I	I	T	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											B		S	S		S	S							T	T						S	S	S																							T	T												S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	E	S	G	L	V	G	A	K	A	L	D	R	E	R	I	T	A	K	Y	G	Y	A	L	D	S	D	G	K	V	G	E	I	V	V	A	A	P	T	Q	A	K	V	N	A	I	I	R	G	K	T	A	H	A	G	V	A	P	E	K	G	V	S	A	I	T	I	A	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T	S						S		G	G	G				S									S		T	T																			B			B	T	T	T		G	G	G	S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	I	A	K	X	P	L	G	R	I	D	S	E	T	T	A	N	I	G	R	F	E	G	G	T	Q	T	N	I	V	C	D	H	V	Q	I	F	A	E	A	R	S	L	I	N	E	K	X	E	A	Q	V	A	K	X	K	E	A	F	E	T	T	A	K	E	X	G	G	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S							T	T												S		T	T	B														S	S																						T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	V	E	V	N	V	X	Y	P	G	F	K	F	A	D	G	D	H	V	V	E	V	A	K	R	A	A	E	K	I	G	R	T	P	S	L	H	Q	S	G	G	G	S	D	A	N	V	I	A	G	H	G	I	P	T	V	N	L	A	V	G	Y	E	E	I	H	T	T	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T														T	T									S	S										T	T											B	S	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Sequence	K	I	P	V	E	E	L	A	K	T	A	E	L	V	V	A	I	I	E	E	V	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)