PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3t6mA_

Fold library id	PDB Header	Molecule	Title
c3t6mA_	PDB header: hydrolase	Chain: A: PDB Molecule: succinyl-diaminopimelate desuccinylase;	PDBTitle: crystal structure of the catalytic domain of dape protein from2 v.cholerea in the zn bound form

Links to external resources
Added to library: Sat Sep 17 10:00:19 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T D S P V L A L A K E L I S R Q S V T P A D A G C Q D L M I E R L K A L G F E I E S M V F E D T T N F W A R R G T Q S P L F V F A G H T D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
B T T
T T T T T
T T
S S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V P A G P L S Q W H T P P F E P T V I D G F L H G R G A A D M K G S L A C M I V A V E R F I A E H P D H Q G S I G F L I T S D E E G I N G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S
T T S
T T S T T T T T T
T T
S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V R V V E T L M A R N E L I D M C I V G E P S S T L A V G D V V K N G R R G G G F L T D T G E L L A A V V A A V E E V N H Q A P A L L T T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
B S S S T T S
G G G G T S
S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . .

Sequence G T S D G R F I A Q M G A Q V V E L G P V N A T I H K V N E C V R I A D L E K L T D M Y Q K T L N H L L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
S B
T T T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	D	S	P	V	L	A	L	A	K	E	L	I	S	R	Q	S	V	T	P	A	D	A	G	C	Q	D	L	M	I	E	R	L	K	A	L	G	F	E	I	E	S	M	V	F	E	D	T	T	N	F	W	A	R	R	G	T	Q	S	P	L	F	V	F	A	G	H	T	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	S			B	T	T			T	T											T	T	T									T	T										S	S	S											B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	P	A	G	P	L	S	Q	W	H	T	P	P	F	E	P	T	V	I	D	G	F	L	H	G	R	G	A	A	D	M	K	G	S	L	A	C	M	I	V	A	V	E	R	F	I	A	E	H	P	D	H	Q	G	S	I	G	F	L	I	T	S	D	E	E	G	I	N	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G		S	S		T	T	S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	R	V	V	E	T	L	M	A	R	N	E	L	I	D	M	C	I	V	G	E	P	S	S	T	L	A	V	G	D	V	V	K	N	G	R	R	G	G	G	F	L	T	D	T	G	E	L	L	A	A	V	V	A	A	V	E	E	V	N	H	Q	A	P	A	L	L	T	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T										S			B	S	S	S	T	T	S							G	G	G	G	T	S																			S	S						S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Sequence	G	T	S	D	G	R	F	I	A	Q	M	G	A	Q	V	V	E	L	G	P	V	N	A	T	I	H	K	V	N	E	C	V	R	I	A	D	L	E	K	L	T	D	M	Y	Q	K	T	L	N	H	L	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S											T								S	B		T	T	T	T	S	T	T