PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vgyB_

Fold library id	PDB Header	Molecule	Title
c1vgyB_	PDB header: structural genomics, unknown function	Chain: B: PDB Molecule: succinyl-diaminopimelate desuccinylase;	PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase

Links to external resources
Added to library: Tue Mar 16 13:00:32 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T E T Q S L E L A K E L I S R P S V T P D D R D C Q K L X A E R L H K I G F A A E E X H F G N T K N I W L R R G T K A P V V C F A G H T D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T S
B T T
T T T T T
B T T B
S S S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V P T G P V E K W D S P P F E P A E R D G R L Y G R G A A D X K T S I A C F V T A C E R F V A K H P N H Q G S I A L L I T S D E E G D A L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G S S S
T T S
T T S T T T T T T
T T
S S S
S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G T T K V V D V L K A R D E L I D Y C I V G E P T A V D K L G D X I K N G R R G S L S G N L T V K G K Q G H I A Y P H L A I N P V H T F A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
B S S S T T S
B
T T
G G G
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A L L E L T Q E V W D E G N E Y F P P T S F Q I S N I N G G T G A T N V I P G E L N V K F N F R F S T E S T E A G L K Q R V H A I L D K H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
S
T T S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V Q Y D L Q W S C S G Q P F L T Q A G K L T D V A R A A I A E T C G I E A E L S T T G G T S D G R F I K A X A Q E L I E L G P S N A T I H Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S
T G G G
S B
T T T T S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . .

Sequence I N E N V R L N D I P K L S A V Y E G I L V R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	E	T	Q	S	L	E	L	A	K	E	L	I	S	R	P	S	V	T	P	D	D	R	D	C	Q	K	L	X	A	E	R	L	H	K	I	G	F	A	A	E	E	X	H	F	G	N	T	K	N	I	W	L	R	R	G	T	K	A	P	V	V	C	F	A	G	H	T	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S											T	S			B	T	T			T	T											T	T	T								B	T	T	B									S	S	S	S										B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	P	T	G	P	V	E	K	W	D	S	P	P	F	E	P	A	E	R	D	G	R	L	Y	G	R	G	A	A	D	X	K	T	S	I	A	C	F	V	T	A	C	E	R	F	V	A	K	H	P	N	H	Q	G	S	I	A	L	L	I	T	S	D	E	E	G	D	A	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	G	G	G	S	S	S		T	T	S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		S	S	S			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	T	T	K	V	V	D	V	L	K	A	R	D	E	L	I	D	Y	C	I	V	G	E	P	T	A	V	D	K	L	G	D	X	I	K	N	G	R	R	G	S	L	S	G	N	L	T	V	K	G	K	Q	G	H	I	A	Y	P	H	L	A	I	N	P	V	H	T	F	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S											T	T													B	S	S	S	T	T	S																			B				T	T		G	G	G		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	L	E	L	T	Q	E	V	W	D	E	G	N	E	Y	F	P	P	T	S	F	Q	I	S	N	I	N	G	G	T	G	A	T	N	V	I	P	G	E	L	N	V	K	F	N	F	R	F	S	T	E	S	T	E	A	G	L	K	Q	R	V	H	A	I	L	D	K	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S																S		T	T				S												T	T	S																T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	Q	Y	D	L	Q	W	S	C	S	G	Q	P	F	L	T	Q	A	G	K	L	T	D	V	A	R	A	A	I	A	E	T	C	G	I	E	A	E	L	S	T	T	G	G	T	S	D	G	R	F	I	K	A	X	A	Q	E	L	I	E	L	G	P	S	N	A	T	I	H	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S															S	S								S				T					G	G	G									S	B		T	T	T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence	I	N	E	N	V	R	L	N	D	I	P	K	L	S	A	V	Y	E	G	I	L	V	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T					T	T