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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3iibA_

Fold library idPDB HeaderMoleculeTitle
c3iibA_PDB header: hydrolaseChain: A: PDB Molecule: peptidase m28;PDBTitle: crystal structure of peptidase m28 precursor (yp_926796.1)2 from shewanella amazonensis sb2b at 1.70 a resolution


Added to library: Sun Aug 29 03:06:49 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDDINQKVAEQLAQKAQSSSLGYDIVESLTVEVGPRLAGSEQDKVAVDWAIAKLQSLGFDRVYKEPVTVP
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Known secondary structure (DSSP)


T



TTSTT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence VWRRGIAKASILSPFPQPLVVTALGGSIATPAQGLSATIVRFDTLQDLQNAEAGSLNDKIAFIDAKTERH
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Known secondary structure (DSSP) SS


BT




TT
SSTS
TTTTTT







 .........150.........160.........170.........180.........190.........200.........210
Sequence RDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRXAHTGXXRYEEGVTAIPAAAISNPDADLINA
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Known secondary structure (DSSP) TT
TT
S
S
S

SS




B



TTS




 .........220.........230.........240.........250.........260.........270.........280
Sequence XLKRDKEVVISLELGSERRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAA
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Known secondary structure (DSSP) TTT




ST



SSS

TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KHILDLPQKPERTIRVVLYAAEELGLLGGKTYAKEHEAELEKHYIAAESDFGAGPIYQIDWRVADTAHSP
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Known secondary structure (DSSP) TSSS

SS
GGGTSTGGGGGG

STT



 .........360.........370.........380.........390.........400.........410.........420
Sequence VINAXKVAEPLGVAAGNNKASGGPDVSXLPALGVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVA
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Known secondary structure (DSSP) GGGGGGGT


S




GGGTTSGGGT



TTGGGTTTSTT

GGGS
 .........430.........440..
Sequence VYAQFAWVXANSKVELRPLPPK
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Known secondary structure (DSSP)





S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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