Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP29131
DateThu Jan 5 11:45:35 GMT 2012
Unique Job ID73a762ade1748b15

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1utaa_
Top template information
Fold:Ferredoxin-like
Superfamily:Sporulation related repeat
Family:Sporulation related repeat
Confidence and coverage
Confidence: 99.9% Coverage: 24%
76 residues ( 24% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 71% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVLVTFIGGLYFITHHKKE
Secondary structure 
SS confidence 
Disorder  ??????????????????????????????????
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEPSAGGEVKTPEQLTPEQRQ
Secondary structure 
SS confidence 
Disorder  ???????????????????????
??????????????????????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQ
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  QQTRTSQAAPVQAQPRQSKPASSQQPYQDLLQTPAHTTAQSKPQQAAPVARAADAPKPTA
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  EKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADST
Secondary structure 
SS confidence 
Disorder  ??????
????
Disorder confidence 
 
   .........310.........
Sequence  LNRLKMAGHTNCIRLAAGG
Secondary structure 
SS confidence 
Disorder 
?
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1uta chain A

3D model

Region: 244 - 319
Aligned: 76
Modelled: 76
Confidence: 99.9%
Identity: 100%
Fold: Ferredoxin-like
Superfamily: Sporulation related repeat
Family: Sporulation related repeat

Phyre2

PDB 1x60 chain A

3D model

Region: 240 - 315
Aligned: 76
Modelled: 76
Confidence: 99.8%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine
PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc

Phyre2

PDB 3cai chain A

3D model

Region: 260 - 308
Aligned: 49
Modelled: 49
Confidence: 88.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein

Phyre2

PDB 1bs0 chain A

3D model

Region: 255 - 308
Aligned: 54
Modelled: 54
Confidence: 87.6%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1elu chain A

3D model

Region: 255 - 308
Aligned: 54
Modelled: 54
Confidence: 85.5%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3f9t chain B

3D model

Region: 260 - 306
Aligned: 47
Modelled: 47
Confidence: 81.6%
Identity: 19%
PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution

Phyre2

PDB 1t3i chain A

3D model

Region: 260 - 307
Aligned: 48
Modelled: 48
Confidence: 65.9%
Identity: 23%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2k49 chain A

3D model

Region: 243 - 314
Aligned: 72
Modelled: 72
Confidence: 59.9%
Identity: 10%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0339 protein so_3888;
PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190

Phyre2

PDB 1iug chain A

3D model

Region: 255 - 306
Aligned: 52
Modelled: 52
Confidence: 59.2%
Identity: 10%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3hdo chain B

3D model

Region: 261 - 308
Aligned: 45
Modelled: 48
Confidence: 59.1%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens

Phyre2

PDB 3cq6 chain E

3D model

Region: 255 - 306
Aligned: 49
Modelled: 52
Confidence: 58.3%
Identity: 18%
PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )

Phyre2

PDB 1m32 chain A

3D model

Region: 261 - 307
Aligned: 47
Modelled: 47
Confidence: 58.0%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2fyf chain B

3D model

Region: 261 - 305
Aligned: 45
Modelled: 45
Confidence: 56.4%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis

Phyre2

PDB 2yrr chain A

3D model

Region: 255 - 307
Aligned: 53
Modelled: 53
Confidence: 52.9%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class v;
PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8

Phyre2

PDB 1qz9 chain A

3D model

Region: 260 - 306
Aligned: 46
Modelled: 47
Confidence: 52.8%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1v72 chain A domain 1

3D model

Region: 262 - 307
Aligned: 46
Modelled: 46
Confidence: 52.6%
Identity: 22%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3hqt chain B

3D model

Region: 255 - 307
Aligned: 53
Modelled: 53
Confidence: 49.8%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa

Phyre2

PDB 1wyu chain A domain 1

3D model

Region: 255 - 305
Aligned: 51
Modelled: 51
Confidence: 47.6%
Identity: 20%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Glycine dehydrogenase subunits (GDC-P)

Phyre2

PDB 3rgg chain D

3D model

Region: 249 - 319
Aligned: 63
Modelled: 71
Confidence: 46.5%
Identity: 19%
PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air

Phyre2

PDB 2f8j chain A domain 1

3D model

Region: 257 - 306
Aligned: 45
Modelled: 50
Confidence: 46.5%
Identity: 22%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
1
d1utaa_
2
c1x60A_
3
c3caiA_
4
d1bs0a_
5
d1elua_
6
c3f9tB_
7
d1t3ia_
8
c2k49A_
9
d1iuga_
10
c3hdoB_
11
c3cq6E_
12
d1m32a_
13
c2fyfB_
14
c2yrrA_
15
d1qz9a_
16
d1v72a1
17
c3hqtB_
18
d1wyua1
19
c3rggD_
20
d2f8ja1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
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90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1utaa_
99.9 100 Fold:Ferredoxin-like
Superfamily:Sporulation related repeat
Family:Sporulation related repeat
2c1x60A_
99.8 29 PDB header:hydrolase
Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine
PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc
3c3caiA_
88.0 22 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
4d1bs0a_
87.6 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
5d1elua_
85.5 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
6c3f9tB_
81.6 19 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
7d1t3ia_
65.9 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
8c2k49A_
59.9 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0339 protein so_3888;
PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190
9d1iuga_
59.2 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
10c3hdoB_
59.1 24 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
11c3cq6E_
58.3 18 PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
12d1m32a_
58.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
13c2fyfB_
56.4 18 PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
14c2yrrA_
52.9 23 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class v;
PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8
15d1qz9a_
52.8 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
16d1v72a1
52.6 22 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
17c3hqtB_
49.8 19 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
18d1wyua1
47.6 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
19c3rggD_
46.5 19 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
20d2f8ja1
46.5 22 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
21c2k8eA_
not modelled 46.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0339 protein yegp;
PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102.
22d1eg5a_
not modelled 44.5 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
23c3p3dA_
not modelled 44.2 21 PDB header:nuclear protein
Chain: A: PDB Molecule:nucleoporin 53;
PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii
24d1gcca_
not modelled 43.5 26 Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:GCC-box binding domain
25c2adbA_
not modelled 43.0 9 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd2 complexed with cucucu rna
26d1dq3a4
not modelled 41.6 14 Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
27c2y9jt_
not modelled 41.0 14 PDB header:protein transport
Chain: T: PDB Molecule:protein prgh;
PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
28d1u11a_
not modelled 40.0 16 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
29c2w8wA_
not modelled 39.7 19 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
30d2c0ra1
not modelled 38.5 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
31c2x7iA_
not modelled 37.9 17 PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: crystal structure of mevalonate kinase from methicillin-2 resistant staphylococcus aureus mrsa252
32c3a2bA_
not modelled 37.6 13 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
33d1ztpa1
not modelled 36.4 8 Fold:eIF4e-like
Superfamily:eIF4e-like
Family:BLES03-like
34d1nz8a_
not modelled 35.9 17 Fold:Ferredoxin-like
Superfamily:N-utilization substance G protein NusG, N-terminal domain
Family:N-utilization substance G protein NusG, N-terminal domain
35d1wg1a_
not modelled 35.7 8 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
36c2fw9A_
not modelled 35.2 16 PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
37d2hk6a1
not modelled 33.5 15 Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
38d1jf9a_
not modelled 33.3 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
39c3f0hA_
not modelled 33.2 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
40c3pn8A_
not modelled 32.3 18 PDB header:hydrolase
Chain: A: PDB Molecule:putative phospho-beta-glucosidase;
PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159
41c3lp6D_
not modelled 32.1 21 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
42d1qcza_
not modelled 31.8 16 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
43c3e9kA_
not modelled 31.1 17 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
44c3trhI_
not modelled 30.8 16 PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
45c2dr1A_
not modelled 29.2 11 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
46d1m6sa_
not modelled 28.6 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
47c1yj7A_
not modelled 28.6 12 PDB header:protein transport
Chain: A: PDB Molecule:escj;
PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
48d1nh8a2
not modelled 28.1 12 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
49c3rfaA_
not modelled 27.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n;
PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine
50c2k06A_
not modelled 27.5 13 PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg
51c3cbfA_
not modelled 26.8 15 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
52c2j75A_
not modelled 26.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin
53c3hyjD_
not modelled 26.5 22 PDB header:transcription regulator
Chain: D: PDB Molecule:protein duf199/whia;
PDBTitle: crystal structure of the n-terminal laglidadg domain of duf199/whia
54c3orsD_
not modelled 26.3 17 PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
55d1xmpa_
not modelled 26.2 18 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
56c3nthA_
not modelled 25.0 16 PDB header:transcription
Chain: A: PDB Molecule:maternal protein tudor;
PDBTitle: crystal structure of tudor and aubergine [r13(me2s)] complex
57c3mafB_
not modelled 24.1 17 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
58d1js3a_
not modelled 23.7 6 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
59c2hzpA_
not modelled 23.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
60c2p2uA_
not modelled 23.6 41 PDB header:dna binding protein
Chain: A: PDB Molecule:host-nuclease inhibitor protein gam, putative;
PDBTitle: crystal structure of putative host-nuclease inhibitor2 protein gam from desulfovibrio vulgaris
61c2h31A_
not modelled 23.3 18 PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
62c3nohA_
not modelled 23.1 50 PDB header:peptide binding protein
Chain: A: PDB Molecule:putative peptide binding protein;
PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution
63d1u0bb1
not modelled 22.5 16 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
64c3bfjK_
not modelled 21.3 15 PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
65c2q5cA_
not modelled 21.1 18 PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
66d2cpia1
not modelled 21.0 11 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
67d1oj4a2
not modelled 20.4 11 Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
68d1lbqa_
not modelled 20.1 13 Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
69c2huuA_
not modelled 20.1 13 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
70c3ffrA_
not modelled 20.0 13 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
71d1rk8a_
not modelled 19.7 11 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
72d1fg7a_
not modelled 19.5 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
73c3ox4D_
not modelled 19.3 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
74c2eqkA_
not modelled 19.0 43 PDB header:transcription
Chain: A: PDB Molecule:tudor domain-containing protein 4;
PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4
75d1wsta1
not modelled 18.9 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
76d2erra1
not modelled 18.4 8 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
77c3o6cA_
not modelled 18.1 12 PDB header:transferase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni
78c3hyiA_
not modelled 18.0 18 PDB header:transcription regulator
Chain: A: PDB Molecule:protein duf199/whia;
PDBTitle: crystal structure of full-length duf199/whia from thermatoga maritima
79d1s0aa_
not modelled 17.9 6 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
80c2z1sA_
not modelled 17.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase b;
PDBTitle: beta-glucosidase b from paenibacillus polymyxa complexed2 with cellotetraose
81c2ordA_
not modelled 17.6 15 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
82d1kvka2
not modelled 17.1 19 Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate kinase
83c2hvzA_
not modelled 16.8 7 PDB header:rna binding protein
Chain: A: PDB Molecule:splicing factor, arginine/serine-rich 7;
PDBTitle: solution structure of the rrm domain of sr rich factor 9g8
84c2i38A_
not modelled 16.6 12 PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20
85c2zoxA_
not modelled 16.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:cytosolic beta-glucosidase;
PDBTitle: crystal structure of the covalent intermediate of human cytosolic2 beta-glucosidase
86c2iruA_
not modelled 16.0 24 PDB header:transferase
Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965;
PDBTitle: crystal structure of the polymerase domain from mycobacterium2 tuberculosis ligase d
87c2dclB_
not modelled 15.9 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503;
PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3
88d1fsha_
not modelled 15.9 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
89c3md3A_
not modelled 15.9 4 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1)
90d2p5ia1
not modelled 15.7 27 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:LplA-like
91c3ml6D_
not modelled 15.5 15 PDB header:protein transport
Chain: D: PDB Molecule:chimeric complex between protein dishevlled2 homolog dvl-2
PDBTitle: a complex between dishevlled2 and clathrin adaptor ap-2
92d1pbga_
not modelled 15.2 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
93d1o51a_
not modelled 14.6 16 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:DUF190/COG1993
94c1v02F_
not modelled 14.2 20 PDB header:hydrolase
Chain: F: PDB Molecule:dhurrinase;
PDBTitle: crystal structure of the sorghum bicolor dhurrinase 1
95d1v02a_
not modelled 14.2 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
96d2a21a1
not modelled 14.2 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
97d2k7ia1
not modelled 14.1 11 Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
98c2k7iB_
not modelled 14.1 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:upf0339 protein atu0232;
PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223.
99d1rv3a_
not modelled 14.1 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0