Phyre 2 alignment of P29131 with c3p3dA_

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Job Description | P29131
Confidence | 44.24% | Date | Thu Jan 5 11:45:35 GMT 2012
Rank | 23 | Aligned Residues | 24
% Identity | 21% | Template | c3p3dA_
PDB info | PDB header:nuclear protein | Chain: A: PDB Molecule:nucleoporin 53; | PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii
Resolution | 2.35 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 277 | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | I | T | T | N | N | G | W | N | R | V | V | I | G | P | V | K | G | K | E | N | A | D | S | T | L | N | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | I | F | S | G | N | S | W | T | K | I | T | . | . | . | Y | D | N | P | A | S | A | V | D | A | L | L | E
Template Known Secondary structure |  |  |  |  |  | T | T |  |  |  |  |  | . | . | . | B | S | S |  |  |  |  |  |  |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 316 | . | . | . | 320 | . | . | . | . | . | . |  |  |  | . | . | . | 330 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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