Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	V	I	W	S	H	G	T	G	F	I	M	S	H	Q	L	T	F	A	D	S	E	F	S	S	K	R	R	Q	T	R	K	E	I	F	L	S	R	M	E	Q	I	L	P	W	Q	N	M	V	E	V	I	E	P	F	Y	P	K	A
Secondary structure
SS confidence
Disorder		?					?	?		?	?		?	?	?															?	?	?	?	?	?																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	N	G	R	R	P	Y	P	L	E	T	M	L	R	I	H	C	M	Q	H	W	Y	N	L	S	D	G	A	M	E	D	A	L	Y	E	I	A	S	M	R	L	F	A	R	L	S	L	D	S	A	L	P	D	R	T	T	I	M	N	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	H	L	L	E	Q	H	Q	L	A	R	Q	L	F	K	T	I	N	R	W	L	A	E	A	G	V	M	M	T	Q	G	T	L	V	D	A	T	I	I	E	A	P	S	S	T	K	N	K	E	Q	Q	R	D	P	E	M	H	Q	T	K
Secondary structure
SS confidence
Disorder																													?																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	G	N	Q	W	H	F	G	M	K	A	H	I	G	V	D	A	K	S	G	L	T	H	S	L	V	T	T	A	A	N	E	H	D	L	N	Q	L	G	N	L	L	H	G	E	E	Q	F	V	S	A	D	A	G	Y	Q	G	A	P	Q
Secondary structure
SS confidence
Disorder				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	E	E	L	A	E	V	D	V	D	W	L	I	A	E	R	P	G	K	V	R	T	L	K	Q	H	P	R	K	N	K	T	A	I	N	I	E	Y	M	K	A	S	I	R	A	K	V	E	H	P	F	R	I	I	K	R	Q	F	G	F
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Sequence		V	K	A	R	Y	K	G	L	L	K	N	D	N	Q	L	A	M	L	F	T	L	A	N	L	F	R	A	D	Q	M	I	R	Q	W	E	R	S	H
Secondary structure
SS confidence
Disorder																																					?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1mus chain A Region: 123 - 321 Aligned: 187 Modelled: 199 Confidence: 98.3% Identity: 13% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 1b7e chain A Region: 125 - 333 Aligned: 176 Modelled: 183 Confidence: 97.9% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 1cxq chain A Region: 191 - 323 Aligned: 106 Modelled: 107 Confidence: 76.7% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Retroviral integrase, catalytic domain Phyre2 PDB 1asu chain A Region: 191 - 323 Aligned: 110 Modelled: 111 Confidence: 75.9% Identity: 20% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Retroviral integrase, catalytic domain Phyre2 PDB 3nf9 chain A Region: 191 - 323 Aligned: 108 Modelled: 111 Confidence: 53.5% Identity: 14% PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design Phyre2 PDB 1c0m chain A domain 2 Region: 191 - 326 Aligned: 114 Modelled: 114 Confidence: 49.1% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Retroviral integrase, catalytic domain Phyre2 PDB 3hef chain B Region: 87 - 123 Aligned: 34 Modelled: 37 Confidence: 44.3% Identity: 15% PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit Phyre2 PDB 2hts chain A Region: 3 - 41 Aligned: 39 Modelled: 39 Confidence: 43.2% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Heat-shock transcription factor Phyre2 PDB 1hks chain A Region: 5 - 41 Aligned: 37 Modelled: 37 Confidence: 40.6% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Heat-shock transcription factor Phyre2 PDB 1a9x chain A domain 1 Region: 36 - 98 Aligned: 50 Modelled: 63 Confidence: 39.8% Identity: 14% Fold: Carbamoyl phosphate synthetase, large subunit connection domain Superfamily: Carbamoyl phosphate synthetase, large subunit connection domain Family: Carbamoyl phosphate synthetase, large subunit connection domain Phyre2 PDB 1c0m chain A Region: 191 - 296 Aligned: 84 Modelled: 84 Confidence: 34.5% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Phyre2 PDB 1d5r chain A domain 1 Region: 1 - 36 Aligned: 35 Modelled: 36 Confidence: 29.4% Identity: 26% Fold: C2 domain-like Superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) Family: PLC-like (P variant) Phyre2 PDB 2ldu chain A Region: 3 - 41 Aligned: 39 Modelled: 39 Confidence: 28.7% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:heat shock factor protein 1; PDBTitle: solution nmr structure of heat shock factor protein 1 dna binding2 domain from homo sapiens, northeast structural genomics consortium3 target hr3023c Phyre2 PDB 2e0y chain B Region: 4 - 18 Aligned: 15 Modelled: 13 Confidence: 28.2% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli Phyre2 PDB 3pvp chain A Region: 44 - 143 Aligned: 83 Modelled: 83 Confidence: 24.2% Identity: 14% PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna Phyre2 PDB 1hyv chain A Region: 191 - 326 Aligned: 103 Modelled: 107 Confidence: 23.1% Identity: 16% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Retroviral integrase, catalytic domain Phyre2 PDB 2nqo chain B Region: 4 - 23 Aligned: 20 Modelled: 20 Confidence: 22.2% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase Phyre2 PDB 1exq chain A Region: 193 - 323 Aligned: 99 Modelled: 102 Confidence: 18.8% Identity: 16% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Retroviral integrase, catalytic domain Phyre2 PDB 3f9k chain V Region: 191 - 323 Aligned: 108 Modelled: 111 Confidence: 18.4% Identity: 12% PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Phyre2 PDB 3epl chain A Region: 8 - 143 Aligned: 129 Modelled: 136 Confidence: 15.3% Identity: 10% PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism Phyre2 1 d1musa_ 2 d1b7ea_ 3 d1cxqa_ 4 d1asua_ 5 c3nf9A_ 6 d1c0ma2 7 c3hefB_ 8 d2htsa_ 9 d1hksa_ 10 d1a9xa1 11 c1c0mA_ 12 d1d5ra1 13 c2lduA_ 14 c2e0yB_ 15 c3pvpA_ 16 d1hyva_ 17 c2nqoB_ 18 d1exqa_ 19 c3f9kV_ 20 c3eplA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1musa_ 98.3 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 2 d1b7ea_ 97.9 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 3 d1cxqa_ 76.7 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 4 d1asua_ 75.9 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 5 c3nf9A_ 53.5 14 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design 6 d1c0ma2 49.1 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 7 c3hefB_ 44.3 15 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 8 d2htsa_ 43.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-shock transcription factor 9 d1hksa_ 40.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-shock transcription factor 10 d1a9xa1 39.8 14 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 11 c1c0mA_ 34.5 18 PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase 12 d1d5ra1 29.4 26 Fold:C2 domain-like Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB) Family:PLC-like (P variant) 13 c2lduA_ 28.7 21 PDB header:chaperone Chain: A: PDB Molecule:heat shock factor protein 1; PDBTitle: solution nmr structure of heat shock factor protein 1 dna binding2 domain from homo sapiens, northeast structural genomics consortium3 target hr3023c 14 c2e0yB_ 28.2 20 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli 15 c3pvpA_ 24.2 14 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 16 d1hyva_ 23.1 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 17 c2nqoB_ 22.2 15 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase 18 d1exqa_ 18.8 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 19 c3f9kV_ 18.4 12 PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd 20 c3eplA_ 15.3 10 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 21 c2v36D_ not modelled 15.1 30 PDB header:transferase Chain: D: PDB Molecule:gamma-glutamyltranspeptidase small chain; PDBTitle: crystal structure of gamma-glutamyl transferase from2 bacillus subtilis 22 c2o8kA_ not modelled 15.0 27 PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element 23 d1mnga2 not modelled 14.3 18 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 24 c1p7gL_ not modelled 13.5 5 PDB header:oxidoreductase Chain: L: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum 25 d1bsma2 not modelled 13.4 11 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 26 d1slma1 not modelled 13.2 27 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 27 d1c6va_ not modelled 12.7 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 28 d1p7ga2 not modelled 12.6 5 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 29 d1kkca2 not modelled 12.5 5 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 30 d1b06a2 not modelled 11.9 5 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 31 d1ma1a2 not modelled 11.6 13 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 32 d1idsa2 not modelled 11.1 13 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 33 c3g7pA_ not modelled 10.9 17 PDB header:unknown function Chain: A: PDB Molecule:nitrogen fixation protein; PDBTitle: crystal structure of a nifx-associated protein of unknown function2 (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 a3 resolution 34 d2vo1a1 not modelled 9.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 35 c3nj2B_ not modelled 9.8 17 PDB header:unknown function Chain: B: PDB Molecule:duf269-containing protein; PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family 36 d1jr9a2 not modelled 9.7 13 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 37 d1wb8a2 not modelled 9.7 5 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 38 c3d3kD_ not modelled 9.2 12 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 39 d2i3oa1 not modelled 9.2 25 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Gamma-glutamyltranspeptidase-like 40 d1gv3a2 not modelled 9.0 11 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 41 d2nyba2 not modelled 8.9 8 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 42 c3ceiA_ not modelled 8.8 9 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori 43 d2p4ka2 not modelled 8.8 11 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 44 d2nlza1 not modelled 8.7 20 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Gamma-glutamyltranspeptidase-like 45 c3n0aA_ not modelled 8.6 29 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase auxilin; PDBTitle: crystal structure of auxilin (40-400) 46 c1y67D_ not modelled 8.5 11 PDB header:oxidoreductase Chain: D: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans 47 c2kvcA_ not modelled 8.1 20 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 48 d1y67a2 not modelled 7.9 11 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 49 c3d3jA_ not modelled 7.4 12 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 50 d1s1ma2 not modelled 7.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 51 c3ga9S_ not modelled 7.2 36 PDB header:hydrolase Chain: S: PDB Molecule:capsule biosynthesis protein capd; PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd,2 crystal form ii 52 c1k6yB_ not modelled 7.1 15 PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase 53 d1j1va_ not modelled 6.7 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 54 d1sfka_ not modelled 6.4 24 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 55 d1vcoa2 not modelled 6.3 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 56 c1cojA_ not modelled 6.2 8 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: fe-sod from aquifex pyrophilus, a hyperthermophilic bacterium 57 d1su3a1 not modelled 6.1 28 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 58 d2fug11 not modelled 5.9 19 Fold:Bromodomain-like Superfamily:Nqo1C-terminal domain-like Family:Nqo1C-terminal domain-like 59 d1b48a1 not modelled 5.9 44 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 60 d1coja2 not modelled 5.8 8 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 61 c1m6vE_ not modelled 5.8 14 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 62 c1dt0A_ not modelled 5.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis 63 c2jg6A_ not modelled 5.7 10 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 64 c3kksB_ not modelled 5.6 14 PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii 65 c3eusB_ not modelled 5.6 16 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding protein; PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi 66 c2vkpA_ not modelled 5.5 12 PDB header:protein-binding Chain: A: PDB Molecule:btb/poz domain-containing protein 6; PDBTitle: crystal structure of btb domain from btbd6 67 d1uera2 not modelled 5.2 15 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 68 d1ix9a2 not modelled 5.1 13 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 69 d1v77a_ not modelled 5.1 7 Fold:7-stranded beta/alpha barrel Superfamily:PHP domain-like Family:RNase P subunit p30

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0