Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76194
DateThu Jan 5 12:20:21 GMT 2012
Unique Job ID70e7ba0d98ca96b6

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1mzga_
Top template information
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
Confidence and coverage
Confidence:100.0% Coverage: 99%
136 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMR
Secondary structure 



















SS confidence 



























































Disorder  ????










?
??

















?



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   .........70.........80.........90.........100.........110.........120
Sequence  QNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRS
Secondary structure 
















SS confidence 



























































Disorder 

















































???????


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   .........130........
Sequence  QGLEAMIRAIRAKAAALS
Secondary structure 
SS confidence 

















Disorder 















??
Disorder confidence 

















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1mzg chain A

3D model

Region: 3 - 138
Aligned: 136
Modelled: 136
Confidence: 100.0%
Identity: 97%
Fold: SufE/NifU
Superfamily: SufE/NifU
Family: SufE-like

Phyre2

PDB 1ni7 chain A

3D model

Region: 6 - 137
Aligned: 132
Modelled: 132
Confidence: 100.0%
Identity: 33%
Fold: SufE/NifU
Superfamily: SufE/NifU
Family: SufE-like

Phyre2

PDB 1wlo chain A

3D model

Region: 3 - 137
Aligned: 131
Modelled: 135
Confidence: 100.0%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sufe protein;
PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8

Phyre2

PDB 1r9p chain A

3D model

Region: 49 - 136
Aligned: 83
Modelled: 88
Confidence: 96.2%
Identity: 13%
Fold: SufE/NifU
Superfamily: SufE/NifU
Family: NifU/IscU domain

Phyre2

PDB 1wfz chain A

3D model

Region: 49 - 137
Aligned: 84
Modelled: 89
Confidence: 94.3%
Identity: 12%
Fold: SufE/NifU
Superfamily: SufE/NifU
Family: NifU/IscU domain

Phyre2

PDB 2z7e chain B

3D model

Region: 49 - 137
Aligned: 85
Modelled: 89
Confidence: 90.5%
Identity: 11%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:nifu-like protein;
PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster

Phyre2

PDB 1xjs chain A

3D model

Region: 1 - 109
Aligned: 94
Modelled: 109
Confidence: 78.7%
Identity: 14%
Fold: SufE/NifU
Superfamily: SufE/NifU
Family: NifU/IscU domain

Phyre2

PDB 1s2n chain B

3D model

Region: 75 - 99
Aligned: 25
Modelled: 25
Confidence: 55.1%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:extracellular subtilisin-like serine proteinase;
PDBTitle: crystal strucure of a cold adapted subtilisin-like serine proteinase

Phyre2

PDB 1gci chain A

3D model

Region: 57 - 99
Aligned: 43
Modelled: 0
Confidence: 54.8%
Identity: 21%
Fold: Subtilisin-like
Superfamily: Subtilisin-like
Family: Subtilases

Phyre2

PDB 2b6n chain A

3D model

Region: 75 - 99
Aligned: 25
Modelled: 25
Confidence: 53.4%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:proteinase k;
PDBTitle: the 1.8 a crystal structure of a proteinase k like enzyme from a2 psychrotroph serratia species

Phyre2

PDB 1r0r chain E

3D model

Region: 56 - 99
Aligned: 44
Modelled: 44
Confidence: 53.1%
Identity: 16%
Fold: Subtilisin-like
Superfamily: Subtilisin-like
Family: Subtilases

Phyre2

PDB 2iy9 chain A

3D model

Region: 57 - 99
Aligned: 43
Modelled: 43
Confidence: 51.7%
Identity: 21%
PDB header:toxin
Chain: A: PDB Molecule:suba;
PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli

Phyre2

PDB 2w2q chain A

3D model

Region: 75 - 99
Aligned: 25
Modelled: 25
Confidence: 49.8%
Identity: 24%
PDB header:hydrolase/receptor
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: pcsk9-deltac d374h mutant bound to wt egf-a of ldlr

Phyre2

PDB 1su0 chain B

3D model

Region: 49 - 109
Aligned: 59
Modelled: 61
Confidence: 49.6%
Identity: 8%
Fold: SufE/NifU
Superfamily: SufE/NifU
Family: NifU/IscU domain

Phyre2

PDB 1pda chain A domain 2

3D model

Region: 50 - 71
Aligned: 21
Modelled: 22
Confidence: 45.7%
Identity: 29%
Fold: dsRBD-like
Superfamily: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

Phyre2

PDB 3f7o chain B

3D model

Region: 57 - 99
Aligned: 43
Modelled: 43
Confidence: 45.6%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease;
PDBTitle: crystal structure of cuticle-degrading protease from paecilomyces2 lilacinus (pl646)

Phyre2

PDB 2oxa chain A

3D model

Region: 75 - 99
Aligned: 25
Modelled: 25
Confidence: 45.2%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular serine protease;
PDBTitle: crystal structure of serine protease of aeromonas sobria

Phyre2

PDB 2qq4 chain A

3D model

Region: 21 - 132
Aligned: 111
Modelled: 112
Confidence: 45.0%
Identity: 15%
PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu;
PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8

Phyre2

PDB 1p8j chain A domain 2

3D model

Region: 75 - 99
Aligned: 25
Modelled: 25
Confidence: 43.9%
Identity: 24%
Fold: Subtilisin-like
Superfamily: Subtilisin-like
Family: Subtilases

Phyre2

PDB 2ixt chain A domain 1

3D model

Region: 57 - 99
Aligned: 43
Modelled: 43
Confidence: 42.4%
Identity: 16%
Fold: Subtilisin-like
Superfamily: Subtilisin-like
Family: Subtilases

Phyre2
1

d1mzga_
2

d1ni7a_
3

c1wloA_
4

d1r9pa_
5

d1wfza_
6

c2z7eB_
7

d1xjsa_
8

c1s2nB_
9

d1gcia_
10

c2b6nA_
11

d1r0re_
12

c2iy9A_
13

c2w2qA_
14

d1su0b_
15

d1pdaa2
16

c3f7oB_
17

c2oxaA_
18

c2qq4A_
19

d1p8ja2
20

d2ixta1
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



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44



45



46



47



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49



50



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54



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57



58



59



60



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62



63



64



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66



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68



69



70



71



72



73



74



75



76



77



78



79



80



81






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1mzga_



100.0 97 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
2d1ni7a_



100.0 33 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
3c1wloA_



100.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sufe protein;
PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8
4d1r9pa_



96.2 13 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
5d1wfza_



94.3 12 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
6c2z7eB_



90.5 11 PDB header:biosynthetic protein
Chain: B: PDB Molecule:nifu-like protein;
PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster
7d1xjsa_



78.7 14 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
8c1s2nB_



55.1 20 PDB header:hydrolase
Chain: B: PDB Molecule:extracellular subtilisin-like serine proteinase;
PDBTitle: crystal strucure of a cold adapted subtilisin-like serine proteinase
9d1gcia_



54.8 21 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
10c2b6nA_



53.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:proteinase k;
PDBTitle: the 1.8 a crystal structure of a proteinase k like enzyme from a2 psychrotroph serratia species
11d1r0re_



53.1 16 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
12c2iy9A_



51.7 21 PDB header:toxin
Chain: A: PDB Molecule:suba;
PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli
13c2w2qA_



49.8 24 PDB header:hydrolase/receptor
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: pcsk9-deltac d374h mutant bound to wt egf-a of ldlr
14d1su0b_



49.6 8 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
15d1pdaa2



45.7 29 Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
16c3f7oB_



45.6 21 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease;
PDBTitle: crystal structure of cuticle-degrading protease from paecilomyces2 lilacinus (pl646)
17c2oxaA_



45.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:extracellular serine protease;
PDBTitle: crystal structure of serine protease of aeromonas sobria
18c2qq4A_



45.0 15 PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu;
PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8
19d1p8ja2



43.9 24 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
20d2ixta1



42.4 16 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
21d1gtka2



not modelled 41.6 29 Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
22d1to2e_



not modelled 40.4 16 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
23d2id4a2



not modelled 36.8 16 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
24d1v6ca_



not modelled 36.8 12 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
25c1r64A_



not modelled 33.9 16 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:kexin;
PDBTitle: the 2.2 a crystal structure of kex2 protease in complex with ac-arg-2 glu-lys-boroarg peptidyl boronic acid inhibitor
26c1p8jB_



not modelled 32.1 24 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:furin precursor;
PDBTitle: crystal structure of the proprotein convertase furin
27d1gnsa_



not modelled 30.5 14 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
28d1bh6a_



not modelled 29.7 20 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
29d1nexa1



not modelled 29.0 17 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
30c3qfhE_



not modelled 26.5 22 PDB header:hydrolase
Chain: E: PDB Molecule:epidermin leader peptide processing serine protease epip;
PDBTitle: 2.05 angstrom resolution crystal structure of epidermin leader peptide2 processing serine protease (epip) from staphylococcus aureus.
31d1fs1b1



not modelled 24.7 30 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
32c3bpsA_



not modelled 23.9 24 PDB header:hydrolase/lipid transport
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: pcsk9:egf-a complex
33d1fs2b1



not modelled 23.3 30 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
34c3lpcA_



not modelled 22.1 24 PDB header:hydrolase
Chain: A: PDB Molecule:aprb2;
PDBTitle: crystal structure of a subtilisin-like protease
35c3n00A_



not modelled 22.0 17 PDB header:transcription regulator
Chain: A: PDB Molecule:rev-erba-alpha;
PDBTitle: crystal structure of a deletion mutant of human reverba ligand binding2 domain bound with an ncor id1 peptide determined to 2.60a
36c2ypnA_



not modelled 20.0 29 PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase
37d2olra2



not modelled 19.1 16 Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
38d1tlha_



not modelled 18.9 29 Fold:Anti-sigma factor AsiA
Superfamily:Anti-sigma factor AsiA
Family:Anti-sigma factor AsiA
39d1ii2a2



not modelled 17.9 22 Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
40c2yukA_



not modelled 17.5 14 PDB header:transferase
Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia
PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog
41d2pwaa1



not modelled 16.8 19 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
42d2ovra1



not modelled 16.4 30 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
43c2gjvF_



not modelled 15.9 15 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative cytoplasmic protein;
PDBTitle: crystal structure of a protein of unknown function from salmonella2 typhimurium
44d2gjva1



not modelled 15.6 15 Fold:Phage tail protein-like
Superfamily:Phage tail protein-like
Family:STM4215-like
45d1meea_



not modelled 13.5 16 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
46d1r6va_



not modelled 13.4 28 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
47d2hh6a1



not modelled 12.8 16 Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
48c2w0gA_



not modelled 12.0 20 PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: hsp90 co-chaperone cdc37
49c1us7B_



not modelled 10.4 20 PDB header:chaperone
Chain: B: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: complex of hsp90 and p50
50d1us7b_



not modelled 10.4 20 Fold:Hsp90 co-chaperone CDC37
Superfamily:Hsp90 co-chaperone CDC37
Family:Hsp90 co-chaperone CDC37
51c3gq2B_



not modelled 10.3 11 PDB header:transport protein
Chain: B: PDB Molecule:general vesicular transport factor p115;
PDBTitle: crystal structure of the dimer of the p115 tether globular head domain
52c3lysC_



not modelled 10.0 9 PDB header:recombination
Chain: C: PDB Molecule:prophage pi2 protein 01, integrase;
PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f
53d1gm5a1



not modelled 9.4 18 Fold:Four-helical up-and-down bundle
Superfamily:RecG, N-terminal domain
Family:RecG, N-terminal domain
54d1n83a_



not modelled 9.1 15 Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
55c2hl7A_



not modelled 9.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
56d1osha_



not modelled 9.0 30 Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
57c3t41B_



not modelled 8.2 21 PDB header:hydrolase
Chain: B: PDB Molecule:epidermin leader peptide processing serine protease epip;
PDBTitle: 1.95 angstrom resolution crystal structure of epidermin leader peptide2 processing serine protease (epip) s393a mutant from staphylococcus3 aureus
58c2w3cA_



not modelled 8.0 11 PDB header:transport protein
Chain: A: PDB Molecule:general vesicular transport factor p115;
PDBTitle: globular head region of the human general vesicular2 transport factor p115
59d1vdda_



not modelled 7.7 26 Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
60c2kvhA_



not modelled 7.1 39 PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
61c3e21A_



not modelled 7.0 32 PDB header:apoptosis
Chain: A: PDB Molecule:fas-associated factor 1;
PDBTitle: crystal structure of faf-1 uba domain
62c3eq1A_



not modelled 6.9 26 PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution
63d1pq9a_



not modelled 6.9 12 Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
64c2kykA_



not modelled 6.8 25 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif
65c2hc4A_



not modelled 6.7 15 PDB header:gene regulation
Chain: A: PDB Molecule:vitamin d receptor;
PDBTitle: crystal structure of the lbd of vdr of danio rerio in2 complex with calcitriol
66d1t7ra_



not modelled 6.7 15 Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
67c3i74B_



not modelled 6.4 20 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:subtilisin-like protease;
PDBTitle: crystal structure of the plant subtilisin-like protease sbt3 in2 complex with a chloromethylketone inhibitor
68c3dmbA_



not modelled 6.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
69c3c18B_



not modelled 6.4 10 PDB header:transferase
Chain: B: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution
70d1fpoa1



not modelled 6.3 8 Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
71d1x40a1



not modelled 6.2 22 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
72c2dl0A_



not modelled 6.2 17 PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1
73d1coka_



not modelled 6.1 15 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
74d1dbia_



not modelled 5.9 21 Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
75c2kg5A_



not modelled 5.6 28 PDB header:signaling protein
Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph
PDBTitle: nmr solution structure of arap3-sam
76c3zqpB_



not modelled 5.6 13 PDB header:dna-binding protein
Chain: B: PDB Molecule:terminase small subunit;
PDBTitle: crystal structure of the small terminase oligomerization2 domain from a spp1-like bacteriophage
77c1z5xE_



not modelled 5.5 21 PDB header:hormone/growth factor receptor
Chain: E: PDB Molecule:ecdysone receptor ligand binding domain;
PDBTitle: hemipteran ecdysone receptor ligand-binding domain2 complexed with ponasterone a
78c2eamA_



not modelled 5.5 18 PDB header:signaling protein
Chain: A: PDB Molecule:putative 47 kda protein;
PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein
79c3lbdA_



not modelled 5.4 18 PDB header:nuclear receptor
Chain: A: PDB Molecule:retinoic acid receptor gamma;
PDBTitle: ligand-binding domain of the human retinoic acid receptor2 gamma bound to 9-cis retinoic acid
80c2ocfA_



not modelled 5.2 11 PDB header:hormone/growth factor
Chain: A: PDB Molecule:estrogen receptor;
PDBTitle: human estrogen receptor alpha ligand-binding domain in complex with2 estradiol and the e2#23 fn3 monobody
81c2kw0A_



not modelled 5.1 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0