Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00550
DateThu Jan 5 10:56:43 GMT 2012
Unique Job ID7017ae0785c3d273

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3qnqD_
Top template information
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Confidence and coverage
Confidence:100.0% Coverage: 55%
353 residues ( 55% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
592 residues ( 93%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLL
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Disorder  ???













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   .........70.........80.........90.........100.........110.........120
Sequence  PLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGWCIKHFDRWVDG
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   .........130.........140.........150.........160.........170.........180
Sequence  KIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKMLAAGVNFMVVHDMLPLASIF
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   .........190.........200.........210.........220.........230.........240
Sequence  VEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIEANPGPGMGVLLAYMFFGRGSAK
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??








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?????

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   .........250.........260.........270.........280.........290.........300
Sequence  QSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILGGGLVSPASPGSI
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   .........310.........320.........330.........340.........350.........360
Sequence  LAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMQDMKAESK
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???????????????????????????
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   .........370.........380.........390.........400.........410.........420
Sequence  GASPLSAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL
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Disorder  ??????????????
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   .........430.........440.........450.........460.........470.........480
Sequence  PPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHTANEEKVKD
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   .........490.........500.........510.........520.........530.........540
Sequence  SLKDSFDDSSANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREK
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????????
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   .........550.........560.........570.........580.........590.........600
Sequence  LTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEH
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   .........610.........620.........630.......
Sequence  IQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK
Secondary structure 








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????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3qnq chain D

3D model

Region: 1 - 353
Aligned: 353
Modelled: 353
Confidence: 100.0%
Identity: 12%
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system

Phyre2

PDB 1a3a chain A

3D model

Region: 496 - 637
Aligned: 142
Modelled: 142
Confidence: 100.0%
Identity: 100%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2

PDB 3oxp chain B

3D model

Region: 492 - 635
Aligned: 142
Modelled: 144
Confidence: 99.9%
Identity: 30%
PDB header:transferase
Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution

Phyre2

PDB 3oxp chain A

3D model

Region: 492 - 635
Aligned: 142
Modelled: 144
Confidence: 99.9%
Identity: 30%
PDB header:transferase
Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution

Phyre2

PDB 2oq3 chain A

3D model

Region: 491 - 635
Aligned: 143
Modelled: 145
Confidence: 99.9%
Identity: 27%
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific cryptic phosphotransferase
PDBTitle: solution structure of the mannitol- specific cryptic2 phosphotransferase enzyme iia cmtb from escherichia coli

Phyre2

PDB 2oqt chain D

3D model

Region: 490 - 637
Aligned: 144
Modelled: 146
Confidence: 99.9%
Identity: 26%
PDB header:transferase
Chain: D: PDB Molecule:hypothetical protein spy0176;
PDBTitle: structural genomics, the crystal structure of a putative2 pts iia domain from streptococcus pyogenes m1 gas

Phyre2

PDB 3bjv chain A

3D model

Region: 490 - 637
Aligned: 144
Modelled: 148
Confidence: 99.9%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:rmpa;
PDBTitle: the crystal structure of a putative pts iia(ptxa) from streptococcus2 mutans

Phyre2

PDB 3urr chain B

3D model

Region: 490 - 637
Aligned: 144
Modelled: 148
Confidence: 99.9%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:pts iia-like nitrogen-regulatory protein ptsn;
PDBTitle: structure of pts iia-like nitrogen-regulatory protein ptsn (bth_i0484)2 (ptsn)

Phyre2

PDB 1a6j chain A

3D model

Region: 491 - 637
Aligned: 145
Modelled: 147
Confidence: 99.9%
Identity: 24%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2

PDB 2a0j chain A

3D model

Region: 490 - 634
Aligned: 142
Modelled: 145
Confidence: 99.9%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:pts system, nitrogen regulatory iia protein;
PDBTitle: crystal structure of nitrogen regulatory protein iia-ntr from2 neisseria meningitidis

Phyre2

PDB 1xiz chain A

3D model

Region: 495 - 635
Aligned: 138
Modelled: 138
Confidence: 99.9%
Identity: 20%
Fold: Phoshotransferase/anion transport protein
Superfamily: Phoshotransferase/anion transport protein
Family: IIA domain of mannitol-specific and ntr phosphotransferase EII

Phyre2

PDB 1vkr chain A

3D model

Region: 375 - 471
Aligned: 97
Modelled: 97
Confidence: 99.6%
Identity: 100%
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii

Phyre2

PDB 1vkr chain A

3D model

Region: 375 - 471
Aligned: 97
Modelled: 97
Confidence: 99.6%
Identity: 100%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2

PDB 3czc chain A

3D model

Region: 377 - 467
Aligned: 90
Modelled: 91
Confidence: 99.4%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans

Phyre2

PDB 1tvm chain A

3D model

Region: 373 - 468
Aligned: 91
Modelled: 96
Confidence: 99.3%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system

Phyre2

PDB 3sqn chain B

3D model

Region: 375 - 467
Aligned: 85
Modelled: 93
Confidence: 99.2%
Identity: 9%
PDB header:transcription regulator
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis

Phyre2

PDB 1iib chain A

3D model

Region: 378 - 470
Aligned: 91
Modelled: 93
Confidence: 97.4%
Identity: 12%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2

PDB 3nbm chain A

3D model

Region: 379 - 428
Aligned: 48
Modelled: 50
Confidence: 96.5%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.

Phyre2

PDB 2l2q chain A

3D model

Region: 379 - 428
Aligned: 49
Modelled: 50
Confidence: 95.9%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi

Phyre2

PDB 2kyr chain A

3D model

Region: 378 - 467
Aligned: 90
Modelled: 90
Confidence: 92.5%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544

Phyre2
1

c3qnqD_
2

d1a3aa_
3

c3oxpB_
4

c3oxpA_
5

c2oq3A_
6

c2oqtD_
7

c3bjvA_
8

c3urrB_
9

d1a6ja_
10

c2a0jA_
11

d1xiza_
12

c1vkrA_
13

d1vkra_
14

c3czcA_
15

c1tvmA_
16

c3sqnB_
17

d1iiba_
18

c3nbmA_
19

c2l2qA_
20

c2kyrA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3qnqD_



100.0 12 PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
2d1a3aa_



100.0 100 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
3c3oxpB_



99.9 30 PDB header:transferase
Chain: B: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution
4c3oxpA_



99.9 30 PDB header:transferase
Chain: A: PDB Molecule:phosphotransferase enzyme ii, a component;
PDBTitle: structure of phosphotransferase enzyme ii, a component from yersinia2 pestis co92 at 1.2 a resolution
5c2oq3A_



99.9 27 PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific cryptic phosphotransferase
PDBTitle: solution structure of the mannitol- specific cryptic2 phosphotransferase enzyme iia cmtb from escherichia coli
6c2oqtD_



99.9 26 PDB header:transferase
Chain: D: PDB Molecule:hypothetical protein spy0176;
PDBTitle: structural genomics, the crystal structure of a putative2 pts iia domain from streptococcus pyogenes m1 gas
7c3bjvA_



99.9 26 PDB header:transferase
Chain: A: PDB Molecule:rmpa;
PDBTitle: the crystal structure of a putative pts iia(ptxa) from streptococcus2 mutans
8c3urrB_



99.9 23 PDB header:transferase
Chain: B: PDB Molecule:pts iia-like nitrogen-regulatory protein ptsn;
PDBTitle: structure of pts iia-like nitrogen-regulatory protein ptsn (bth_i0484)2 (ptsn)
9d1a6ja_



99.9 24 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
10c2a0jA_



99.9 26 PDB header:transferase
Chain: A: PDB Molecule:pts system, nitrogen regulatory iia protein;
PDBTitle: crystal structure of nitrogen regulatory protein iia-ntr from2 neisseria meningitidis
11d1xiza_



99.9 20 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:IIA domain of mannitol-specific and ntr phosphotransferase EII
12c1vkrA_



99.6 100 PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
13d1vkra_



99.6 100 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
14c3czcA_



99.4 20 PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
15c1tvmA_



99.3 20 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
16c3sqnB_



99.2 9 PDB header:transcription regulator
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis
17d1iiba_



97.4 12 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
18c3nbmA_



96.5 23 PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
19c2l2qA_



95.9 18 PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
20c2kyrA_



92.5 17 PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
21d1ycga1



not modelled 90.3 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
22c3b9yA_



not modelled 88.9 14 PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
23d1hynp_



not modelled 88.7 13 Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:Anion transport protein, cytoplasmic domain
24d2arka1



not modelled 88.7 11 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
25d2fcra_



not modelled 88.4 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
26d1vmea1



not modelled 87.8 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
27d1f4pa_



not modelled 87.8 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
28c1hynQ_



not modelled 87.0 16 PDB header:membrane protein
Chain: Q: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein
29c3edoA_



not modelled 87.0 23 PDB header:flavoprotein
Chain: A: PDB Molecule:putative trp repressor binding protein;
PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
30c2wc1A_



not modelled 86.6 17 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
31c1bvyF_



not modelled 86.5 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
32d1bvyf_



not modelled 86.5 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
33c2hnbA_



not modelled 86.2 14 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
34d1e5da1



not modelled 86.1 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
35d2r48a1



not modelled 86.0 16 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
36c3f6sI_



not modelled 84.9 19 PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
37d1czna_



not modelled 84.8 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
38d1yoba1



not modelled 84.8 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
39d1tlla2



not modelled 84.8 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
40c3rofA_



not modelled 84.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa;
PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa
41c3hr4C_



not modelled 84.2 12 PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
42d1b1ca_



not modelled 82.8 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
43d1y1la_



not modelled 82.8 27 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
44c3hlyA_



not modelled 82.7 4 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
45c2gi4A_



not modelled 81.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase;
PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.
46d1dg9a_



not modelled 81.7 23 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
47d1oboa_



not modelled 80.8 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
48d5nula_



not modelled 78.9 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
49d5pnta_



not modelled 78.7 23 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
50c3klbA_



not modelled 76.4 22 PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
51c3fniA_



not modelled 76.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
52c2l18A_



not modelled 76.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: an arsenate reductase in the phosphate binding state
53c3d7nA_



not modelled 75.1 12 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
54c2cwdA_



not modelled 73.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase;
PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8
55c2ohiB_



not modelled 73.2 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
56c3nhzA_



not modelled 72.9 23 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
57d1fuea_



not modelled 72.1 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
58c1vmeB_



not modelled 71.5 18 PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
59c1u2pA_



not modelled 71.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: crystal structure of mycobacterium tuberculosis low2 molecular protein tyrosine phosphatase (mptpa) at 1.9a3 resolution
60d1ydga_



not modelled 70.1 11 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
61d1jf8a_



not modelled 69.6 14 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
62d1kgda_



not modelled 69.2 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
63d2oara1



not modelled 68.9 9 Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
64c1wv9B_



not modelled 68.4 26 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
65c2oarA_



not modelled 68.1 9 PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
66d2vo1a1



not modelled 67.7 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
67d2fz5a1



not modelled 67.0 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
68c2f00A_



not modelled 66.2 17 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
69d1p3da1



not modelled 65.8 15 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
70d2r4qa1



not modelled 64.1 15 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
71d1ykga1



not modelled 63.6 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
72c2wmyH_



not modelled 63.4 23 PDB header:hydrolase
Chain: H: PDB Molecule:putative acid phosphatase wzb;
PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate.
73c3onoA_



not modelled 62.6 24 PDB header:isomerase
Chain: A: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
74d1ja1a2



not modelled 61.9 24 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
75c2ppwA_



not modelled 61.3 24 PDB header:isomerase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
76c2fekA_



not modelled 60.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: structure of a protein tyrosine phosphatase
77c3he8A_



not modelled 58.6 46 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
78c1zggA_



not modelled 58.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
79c3tovB_



not modelled 58.3 19 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
80c3m1pA_



not modelled 57.6 31 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
81c3k7pA_



not modelled 57.6 31 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
82d1p8aa_



not modelled 57.4 17 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
83d2vvpa1



not modelled 57.4 24 Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
84d1d1qa_



not modelled 57.3 12 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
85d1nn4a_



not modelled 57.2 38 Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
86c3s5pA_



not modelled 56.7 31 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
87c3qd5B_



not modelled 55.1 22 PDB header:isomerase
Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase;
PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
88c3jviA_



not modelled 53.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
89d1x9ia_



not modelled 52.9 20 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
90c3cz5B_



not modelled 52.6 14 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
91c2jrlA_



not modelled 50.3 9 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
92d1j6ua1



not modelled 48.7 17 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
93c3b6iB_



not modelled 48.4 15 PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
94d1n1ea2



not modelled 47.7 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
95c3snkA_



not modelled 47.4 12 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
96d2eyqa5



not modelled 46.9 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
97d1g16a_



not modelled 46.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
98c3c5yD_



not modelled 45.5 36 PDB header:isomerase
Chain: D: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
99d1s8na_



not modelled 43.8 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
100d1yt8a4



not modelled 43.6 17 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
101c3tp9B_



not modelled 42.7 34 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains
102d1o1xa_



not modelled 41.1 27 Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
103c3ilmD_



not modelled 39.9 22 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr3790 protein;
PDBTitle: crystal structure of the alr3790 protein from anabaena sp. northeast2 structural genomics consortium target nsr437h
104c3fojA_



not modelled 39.9 30 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ssp1007 from staphylococcus2 saprophyticus subsp. saprophyticus. northeast structural3 genomics target syr101a.
105c3jteA_



not modelled 39.7 14 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
106c3t38B_



not modelled 39.1 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:arsenate reductase;
PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1'
107d1jl3a_



not modelled 39.1 22 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
108c3mb8A_



not modelled 39.0 17 PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase from toxoplasma2 gondii in complex with immucillin-h
109d1q1aa_



not modelled 38.6 15 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
110c3bjeA_



not modelled 37.5 23 PDB header:transferase
Chain: A: PDB Molecule:nucleoside phosphorylase, putative;
PDBTitle: crystal structure of trypanosoma brucei nucleoside phosphorylase shows2 uridine phosphorylase activity
111c1ir6A_



not modelled 35.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease recj;
PDBTitle: crystal structure of exonuclease recj bound to manganese
112d1ir6a_



not modelled 35.6 16 Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Exonuclease RecJ
113d1v3aa_



not modelled 35.2 26 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
114c3r2uC_



not modelled 34.8 14 PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col
115c3tl6B_



not modelled 34.7 22 PDB header:transferase
Chain: B: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica
116c3i2vA_



not modelled 34.1 22 PDB header:transferase
Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3;
PDBTitle: crystal structure of human mocs3 rhodanese-like domain
117d1ag9a_



not modelled 33.9 9 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
118d1je0a_



not modelled 33.6 10 Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
119c1gqqA_



not modelled 32.9 14 PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae
120d1vi2a1



not modelled 32.4 28 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0