Phyre 2 alignment of P00550 with c3tovB_

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Job Description | P00550
Confidence | 58.32% | Date | Thu Jan 5 10:56:43 GMT 2012
Rank | 79 | Aligned Residues | 58
% Identity | 19% | Template | c3tovB_
PDB info | PDB header:transferase | Chain: B: PDB Molecule:glycosyl transferase family 9; | PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
Resolution | 2.98 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . |  |  |  |  |  | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . |  | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | T | N | D | L | S | H | V | R | K | I | I | V | A | C | D | A | G | M | G | . | . | . | . | . | S | S | A | M | G | A | G | V | L | R | K | K | I | Q | D | A | G | L | S | Q | I | S | V | T | N | . | S | A | I | N | N | L | P | P | D | V | D | L | V | I | T | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | A | X | E | L | . | D | Y | K | R | I | V | V | T | F | L | X | H | L | G | D | V | I | L | T | T | P | F | L | . | . | E | V | L | R | K | A | A | P | H | S | H | I | T | Y | V | I | D | E | K | L | Q | Q | V | X | E | Y | N | P | N | I | D | E | L | I | V | V
Template Known Secondary structure |  |  |  |  |  |  | . | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  | . | . |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  | G | G | G | G | G | G | T | T | T |  | T | T |  | S |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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