05/01/2012 21:00:08 : INFO  : Run start: Thu Jan  5 21:00:07 GMT 2012
05/01/2012 21:00:10 : INFO  : Initialised job
05/01/2012 21:00:11 : INFO  : Renaming log file 'phyre2_20120105_210007.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7017ae0785c3d273/phyre_20120105_210007.log'
05/01/2012 21:00:11 : INFO  : Initialised job:
Sequence
>batch____
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLL
PLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGWCIKHFDRWVDG
KIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKMLAAGVNFMVVHDMLPLASIF
VEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIEANPGPGMGVLLAYMFFGRGSAK
QSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILGGGLVSPASPGSI
LAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMQDMKAESK
GASPLSAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL
PPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHTANEEKVKD
SLKDSFDDSSANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREK
LTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEH
IQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK

05/01/2012 21:00:12 : INFO  : Checked sequence
05/01/2012 21:00:13 : INFO  : Finding homologues with PSI-BLAST
05/01/2012 21:00:14 : INFO  : PSI-BLAST 3 iterations
05/01/2012 21:03:30 : INFO  : PSI-BLAST 5 iterations
05/01/2012 21:07:47 : INFO  : Finished PSI-BLAST
05/01/2012 21:07:48 : INFO  : Running Buildali to generate a3m file
05/01/2012 21:23:17 : INFO  : Converting to HMM
05/01/2012 21:23:24 : INFO  : Calibrating HMM
05/01/2012 21:23:48 : INFO  : Searching HMM database
05/01/2012 21:38:51 : INFO  : Finished buildali
05/01/2012 21:38:52 : INFO  : Predicting secondary structure
05/01/2012 21:38:55 : INFO  : Predicted secondary structure (PSI-Pred)
05/01/2012 21:38:56 : INFO  : Predicting Disordered regions
05/01/2012 21:38:58 : INFO  : Predicted Disorder (Disopred)
05/01/2012 21:38:58 : INFO  : Running memsat_svm check
05/01/2012 21:41:40 : INFO  : Running memsat_svm full
05/01/2012 21:51:27 : INFO  : Predicted Transmembrane (memsat_svm) ID '7017ae0785c3d273'
05/01/2012 21:51:28 : INFO  : Initialising fold library search
05/01/2012 21:51:31 : INFO  : Initialised search input
05/01/2012 21:51:32 : INFO  : Building Ensemble models
05/01/2012 21:51:34 : INFO  : Building hh.c3qnqD_.model.1.pdb
05/01/2012 21:51:40 : INFO  : Building hh.d1a3aa_.model.2.pdb
05/01/2012 21:51:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7017ae0785c3d273/hh.d1a3aa_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7017ae0785c3d273/d1a3aa_.2.pdb
05/01/2012 21:51:46 : INFO  : Building hh.c1vkrA_.model.3.pdb
05/01/2012 21:51:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7017ae0785c3d273/hh.c1vkrA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7017ae0785c3d273/c1vkrA_.12.pdb
05/01/2012 21:51:53 : INFO  : Building hh.d1vkra_.model.4.pdb
05/01/2012 21:51:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7017ae0785c3d273/hh.d1vkra_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7017ae0785c3d273/d1vkra_.13.pdb
05/01/2012 21:51:59 : INFO  : Building c3qnqD_.1.pdb
05/01/2012 21:52:05 : INFO  : Building d1a3aa_.2.pdb
05/01/2012 21:52:11 : INFO  : Building c3oxpB_.3.pdb
05/01/2012 21:52:17 : INFO  : Building c3oxpA_.4.pdb
05/01/2012 21:52:23 : INFO  : Building c2oq3A_.5.pdb
05/01/2012 21:52:31 : INFO  : Building c2oqtD_.6.pdb
05/01/2012 21:52:36 : INFO  : Building c3bjvA_.7.pdb
05/01/2012 21:52:42 : INFO  : Building c3urrB_.8.pdb
05/01/2012 21:52:48 : INFO  : Building d1a6ja_.9.pdb
05/01/2012 21:52:54 : INFO  : Building c2a0jA_.10.pdb
05/01/2012 21:53:00 : INFO  : Building d1xiza_.11.pdb
05/01/2012 21:53:06 : INFO  : Building c1vkrA_.12.pdb
05/01/2012 21:53:12 : INFO  : Building d1vkra_.13.pdb
05/01/2012 21:53:18 : INFO  : Building c3czcA_.14.pdb
05/01/2012 21:53:24 : INFO  : Building c1tvmA_.15.pdb
05/01/2012 21:53:29 : INFO  : Building c3sqnB_.16.pdb
05/01/2012 21:53:35 : INFO  : Building d1iiba_.17.pdb
05/01/2012 21:53:41 : INFO  : Building c3nbmA_.18.pdb
05/01/2012 21:53:46 : INFO  : Building c2l2qA_.19.pdb
05/01/2012 21:53:52 : INFO  : Building c2kyrA_.20.pdb
05/01/2012 21:54:25 : INFO  : Finished HH model building
05/01/2012 21:54:26 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/01/2012 21:55:08 : INFO  : html domain output complete ID '7017ae0785c3d273'
05/01/2012 22:34:56 : INFO  : Run end  : Thu Jan  5 22:34:56 GMT 2012
