Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	P	H	C	P	K	C	N	S	E	Y	T	Y	E	D	N	G	M	Y	I	C	P	E	C	A	Y	E	W	N	D	A	E	P	A	Q	E	S	D	E	L	I	V	K	D	A	N	G	N	L	L	A	D	G	D	S	V	T	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?							?																		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Sequence		I	K	D	L	K	V	K	G	S	S	S	M	L	K	I	G	T	K	V	K	N	I	R	L	V	E	G	D	H	N	I	D	C	K	I	D	G	F	G	P	M	K	L	K	S	E	F	V	K	K	N
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?	?	?	?	?								?		?		?	?																?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2akl chain A Region: 2 - 110 Aligned: 109 Modelled: 109 Confidence: 100.0% Identity: 68% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa Phyre2 PDB 2akl chain A domain 1 Region: 38 - 110 Aligned: 73 Modelled: 73 Confidence: 100.0% Identity: 70% Fold: SH3-like barrel Superfamily: Prokaryotic SH3-related domain Family: PhnA-like Phyre2 PDB 2akk chain A domain 1 Region: 41 - 111 Aligned: 71 Modelled: 71 Confidence: 100.0% Identity: 48% Fold: SH3-like barrel Superfamily: Prokaryotic SH3-related domain Family: PhnA-like Phyre2 PDB 2akl chain A domain 2 Region: 2 - 38 Aligned: 37 Modelled: 37 Confidence: 99.5% Identity: 59% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: PhnA zinc-binding domain Phyre2 PDB 1twf chain I domain 2 Region: 5 - 36 Aligned: 32 Modelled: 32 Confidence: 89.0% Identity: 28% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2gb5 chain B Region: 6 - 76 Aligned: 61 Modelled: 67 Confidence: 87.9% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 2jr6 chain A Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 87.6% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 Phyre2 PDB 2f9i chain D Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 87.5% Identity: 25% PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus Phyre2 PDB 1tfi chain A Region: 5 - 30 Aligned: 26 Modelled: 26 Confidence: 87.0% Identity: 38% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2js4 chain A Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 86.7% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 Phyre2 PDB 2jny chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 86.4% Identity: 13% Fold: Trm112p-like Superfamily: Trm112p-like Family: Trm112p-like Phyre2 PDB 2riq chain A Region: 3 - 31 Aligned: 28 Modelled: 29 Confidence: 85.1% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 Phyre2 PDB 2jvn chain A Region: 3 - 31 Aligned: 28 Modelled: 28 Confidence: 84.9% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 Phyre2 PDB 1i3q chain I Region: 5 - 40 Aligned: 36 Modelled: 36 Confidence: 84.1% Identity: 19% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Phyre2 PDB 2kdx chain A Region: 6 - 27 Aligned: 22 Modelled: 22 Confidence: 83.5% Identity: 18% PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein Phyre2 PDB 2pk7 chain A domain 1 Region: 1 - 31 Aligned: 31 Modelled: 31 Confidence: 82.4% Identity: 13% Fold: Trm112p-like Superfamily: Trm112p-like Family: Trm112p-like Phyre2 PDB 2ct7 chain A domain 1 Region: 6 - 30 Aligned: 25 Modelled: 25 Confidence: 82.4% Identity: 28% Fold: RING/U-box Superfamily: RING/U-box Family: IBR domain Phyre2 PDB 1qyp chain A Region: 5 - 32 Aligned: 28 Modelled: 28 Confidence: 82.4% Identity: 36% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1pft chain A Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 82.4% Identity: 38% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2hf1 chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 80.5% Identity: 17% Fold: Trm112p-like Superfamily: Trm112p-like Family: Trm112p-like Phyre2 1 c2aklA_ 2 d2akla1 3 d2akka1 4 d2akla2 5 d1twfi2 6 c2gb5B_ 7 c2jr6A_ 8 c2f9iD_ 9 d1tfia_ 10 c2js4A_ 11 d2jnya1 12 c2riqA_ 13 c2jvnA_ 14 c1i3qI_ 15 c2kdxA_ 16 d2pk7a1 17 d2ct7a1 18 d1qypa_ 19 d1pfta_ 20 d2hf1a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2aklA_ 100.0 68 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 2 d2akla1 100.0 70 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:PhnA-like 3 d2akka1 100.0 48 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:PhnA-like 4 d2akla2 99.5 59 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 5 d1twfi2 89.0 28 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 6 c2gb5B_ 87.9 13 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 7 c2jr6A_ 87.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 8 c2f9iD_ 87.5 25 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 9 d1tfia_ 87.0 38 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 10 c2js4A_ 86.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 11 d2jnya1 86.4 13 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 12 c2riqA_ 85.1 21 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 13 c2jvnA_ 84.9 21 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 14 c1i3qI_ 84.1 19 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 15 c2kdxA_ 83.5 18 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 16 d2pk7a1 82.4 13 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 17 d2ct7a1 82.4 28 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 18 d1qypa_ 82.4 36 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 19 d1pfta_ 82.4 38 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 20 d2hf1a1 80.5 17 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 21 d1dl6a_ not modelled 79.9 43 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 22 c2kpiA_ not modelled 78.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 23 c3cngC_ not modelled 78.2 26 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 24 d2f9yb1 not modelled 77.4 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 25 c2f9yB_ not modelled 77.4 21 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 26 c3gn5B_ not modelled 74.0 25 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 27 d2gmga1 not modelled 71.8 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 28 c3k7aM_ not modelled 70.9 30 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 29 c3a44D_ not modelled 65.5 41 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 30 d1pfva3 not modelled 64.9 44 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 31 d1p91a_ not modelled 64.3 45 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 32 d1nuia2 not modelled 62.8 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 33 d2fiya1 not modelled 62.7 33 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 34 d2apob1 not modelled 62.6 53 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 35 c2k5rA_ not modelled 61.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein xf2673; PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39 36 c2pziA_ not modelled 60.3 21 PDB header:transferase Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng; PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017 37 d1k3xa3 not modelled 60.0 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 38 c3bvoA_ not modelled 59.4 25 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 39 c3tsuA_ not modelled 59.2 42 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 40 d2ey4e1 not modelled 58.8 47 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 41 d2f4ma1 not modelled 57.9 33 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 42 c1hk8A_ not modelled 53.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 43 d1hk8a_ not modelled 53.9 21 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 44 c3u50C_ not modelled 52.0 13 PDB header:dna binding protein Chain: C: PDB Molecule:telomerase-associated protein 82; PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-c 45 d1tdza3 not modelled 50.4 28 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 46 c1dvbA_ not modelled 49.0 38 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 47 c2ja6L_ not modelled 47.7 22 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 48 c1nuiA_ not modelled 47.4 25 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 49 d1l1oc_ not modelled 47.4 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 50 d2j0151 not modelled 46.3 39 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 51 d1h7va_ not modelled 46.1 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 52 d1tiea_ not modelled 45.4 18 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 53 d1ee8a3 not modelled 45.4 32 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 54 c3h0gL_ not modelled 44.6 26 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 55 d1vd4a_ not modelled 43.3 31 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 56 d1dgsa1 not modelled 42.6 28 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 57 d1dx8a_ not modelled 42.5 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 58 c2qkdA_ not modelled 42.1 22 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 59 d3bx1c1 not modelled 41.7 18 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 60 d1qcva_ not modelled 41.1 5 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 61 d1wd2a_ not modelled 39.3 27 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 62 c3eswA_ not modelled 39.2 21 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 63 d2rdva_ not modelled 38.7 35 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 64 d1iu5a_ not modelled 38.5 18 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 65 d1k82a3 not modelled 38.3 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 66 d1r2za3 not modelled 38.2 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 67 d1l1ta3 not modelled 38.2 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 68 d1iroa_ not modelled 38.1 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 69 d1x3za1 not modelled 38.1 24 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 70 c2dreA_ not modelled 38.0 28 PDB header:plant protein Chain: A: PDB Molecule:water-soluble chlorophyll protein; PDBTitle: crystal structure of water-soluble chlorophyll protein from2 lepidium virginicum at 2.00 angstrom resolution 71 c2kn9A_ not modelled 37.9 24 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 72 d1brfa_ not modelled 37.8 14 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 73 d2dsxa1 not modelled 36.9 32 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 74 c2j6aA_ not modelled 36.3 18 PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex. 75 d1rb9a_ not modelled 36.0 35 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 76 d4rxna_ not modelled 35.3 20 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 77 c2v3bB_ not modelled 34.1 20 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 78 c3floD_ not modelled 33.4 21 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 79 c3lpeF_ not modelled 33.3 35 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 80 d2zjrz1 not modelled 32.5 39 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 81 d1s24a_ not modelled 32.4 20 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 82 c1s24A_ not modelled 32.4 20 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 83 c3ndjA_ not modelled 32.3 30 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 84 c3egxB_ not modelled 31.8 18 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 85 d1eyla_ not modelled 31.3 19 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 86 c2qn4B_ not modelled 31.3 18 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:alpha-amylase/subtilisin inhibitor; PDBTitle: structure and function study of rice bifunctional alpha-2 amylase/subtilisin inhibitor from oryza sativa 87 c2qa4Z_ not modelled 30.8 26 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 88 d1vqoz1 not modelled 29.9 26 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 89 c1yshD_ not modelled 29.8 19 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 90 c1v9pB_ not modelled 29.7 28 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 91 c2ba1B_ not modelled 29.7 32 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 92 d1ffkw_ not modelled 29.6 22 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 93 c2zkrz_ not modelled 29.4 19 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 94 c3f2cA_ not modelled 29.1 24 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 95 d2k4xa1 not modelled 28.9 32 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 96 c3axtA_ not modelled 28.9 23 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 97 c2k5cA_ not modelled 28.8 44 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 98 d1jj2y_ not modelled 28.6 26 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 99 d1imla1 not modelled 27.9 71 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 100 c3iirA_ not modelled 27.4 21 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:trypsin inhibitor; PDBTitle: crystal structure of miraculin like protein from seeds of murraya2 koenigii 101 c2l43A_ not modelled 27.3 20 PDB header:transcription Chain: A: PDB Molecule:n-teminal domain from histone h3.3, linker, phd1 domain PDBTitle: structural basis for histone code recognition by brpf2-phd1 finger 102 d2jnea1 not modelled 26.9 28 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 103 c2jneA_ not modelled 26.9 28 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 104 c3pihA_ not modelled 26.1 33 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 105 d1yuza2 not modelled 26.0 33 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 106 d1fqta_ not modelled 25.9 11 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 107 c2yt5A_ not modelled 25.8 34 PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the phd domain of metal-response2 element-binding transcription factor 2 108 d1r8na_ not modelled 25.5 23 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 109 c3jyw9_ not modelled 25.0 19 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 110 d1cwva2 not modelled 24.9 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Invasin/intimin cell-adhesion fragments Family:Invasin/intimin cell-adhesion fragments 111 c2jrpA_ not modelled 24.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 112 c1r8oA_ not modelled 24.2 24 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kunitz trypsin inhibitor; PDBTitle: crystal structure of an unusual kunitz-type trypsin inhibitor from2 copaifera langsdorffii seeds 113 c4a17Y_ not modelled 24.1 23 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 114 c2ktvA_ not modelled 23.7 25 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: human erf1 c-domain, "open" conformer 115 c3cc4Z_ not modelled 23.7 27 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 116 c1dgsB_ not modelled 23.6 28 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 117 c1s1i9_ not modelled 23.5 19 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 118 d2gvia2 not modelled 23.5 70 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:FwdE C-terminal domain-like 119 d1weva_ not modelled 23.3 24 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain 120 d1lkoa2 not modelled 23.1 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0